Gchil10675.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10675.t1
Unique Name	Gchil10675.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000138_pilon	contig	tig00000138_pilon:84543..85472 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707590.1
PFAMs	NAD_binding_11,NAD_binding_2
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue	4.9e-122
EggNOG OGs	COG2084@1\|root,KOG0409@2759\|Eukaryota
Description	3hydroxyisobutyrate dehydrogenase
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10675	Gchil10675	Gracilaria chilensis NLEC103_M9 male	gene	tig00000138_pilon 84543..85472 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10675.t1.start1	Gchil10675.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000138_pilon 84543..84545 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10675.t1.CDS1	Gchil10675.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000138_pilon 84543..85472 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10675.t1.exon1	Gchil10675.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000138_pilon 84543..85472 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10675.t1.stop1	Gchil10675.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000138_pilon 85470..85472 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10675.t1	Gchil10675.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000138_pilon 84543..85472 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000138_pilon:84543..85472+
coding sequence from alignment at tig00000138_pilon:84543..85472+

mRNA sequence

>Gchil10675.t1 ID=Gchil10675.t1|Name=Gchil10675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=310bp
MMPASPSNTSIGWIGTGVMGRHMATHVIKAGYSLTVYNRTKAKAQPLLDL
GAEYADTPAEVAAVSDIVFTMVGYPSDVRQVISGSHGLLSTLKEGGIIVD
LTTSEPGLAAELAALAQASDKYVVDAPVTGGDIGAKNGTLSIMVGGDTRA
VERVQPVLKCFAHTVTVFAGPGTGQHCKMANQITIATSMLGMCEGLMYAH
AAGLDLESYLAAIAGGGAGSFSVKSYAPRILKGDMNPGFYVEHFVKDLGI
ALEACRQMGVSLPGLALAQQLYVSLSACGDQRMGTQALIRSLERINGRQL
PTKDTFTAW*

spliced messenger RNA

>Gchil10675.t1 ID=Gchil10675.t1|Name=Gchil10675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000138_pilon:84543..85472+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCAGCCTCGCCGTCAAACACTTCCATCGGATGGATCGGAACCGG
TGTCATGGGTCGTCACATGGCCACCCATGTCATCAAAGCCGGCTACTCTC
TCACCGTGTACAACCGCACCAAGGCCAAAGCACAACCGCTCCTCGATCTG
GGCGCCGAGTACGCCGACACCCCCGCCGAGGTTGCCGCCGTCTCCGACAT
CGTCTTTACCATGGTCGGTTATCCCTCTGACGTGCGTCAAGTCATCTCCG
GCTCGCACGGCTTGCTGTCCACCCTCAAGGAGGGTGGTATTATCGTCGAT
CTCACCACCTCCGAGCCCGGTCTCGCTGCAGAGCTTGCCGCCTTGGCCCA
GGCCTCCGACAAGTATGTCGTGGACGCCCCGGTCACCGGCGGCGACATTG
GCGCCAAGAACGGCACCCTCAGCATCATGGTCGGTGGCGATACGCGCGCC
GTTGAGCGCGTGCAGCCAGTACTCAAGTGCTTCGCCCACACTGTCACCGT
GTTTGCTGGGCCTGGAACAGGACAGCATTGCAAGATGGCGAATCAAATCA
CCATTGCCACCTCTATGTTGGGCATGTGTGAGGGTCTCATGTACGCGCAT
GCTGCCGGTCTGGATCTAGAGAGCTACCTTGCCGCCATTGCCGGCGGTGG
TGCCGGATCGTTTTCTGTCAAGTCGTATGCACCCAGAATACTCAAGGGTG
ACATGAACCCGGGTTTCTACGTCGAACATTTTGTAAAAGACCTTGGCATC
GCGTTGGAGGCCTGCAGGCAGATGGGTGTTTCTCTTCCGGGCCTGGCGCT
TGCTCAGCAGCTGTACGTGTCGCTGTCAGCTTGTGGTGATCAGCGAATGG
GAACGCAGGCACTGATCAGGTCGTTGGAGAGGATCAATGGTCGGCAGCTA
CCTACTAAAGACACTTTTACCGCATGGTAA

protein sequence of Gchil10675.t1

>Gchil10675.t1 ID=Gchil10675.t1|Name=Gchil10675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=310bp
MMPASPSNTSIGWIGTGVMGRHMATHVIKAGYSLTVYNRTKAKAQPLLDL
GAEYADTPAEVAAVSDIVFTMVGYPSDVRQVISGSHGLLSTLKEGGIIVD
LTTSEPGLAAELAALAQASDKYVVDAPVTGGDIGAKNGTLSIMVGGDTRA
VERVQPVLKCFAHTVTVFAGPGTGQHCKMANQITIATSMLGMCEGLMYAH
AAGLDLESYLAAIAGGGAGSFSVKSYAPRILKGDMNPGFYVEHFVKDLGI
ALEACRQMGVSLPGLALAQQLYVSLSACGDQRMGTQALIRSLERINGRQL
PTKDTFTAW*

mRNA from alignment at tig00000138_pilon:84543..85472+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10675.t1 ID=Gchil10675.t1|Name=Gchil10675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000138_pilon:84543..85472+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCAGCCTCGCCGTCAAACACTTCCATCGGATGGATCGGAACCGG
TGTCATGGGTCGTCACATGGCCACCCATGTCATCAAAGCCGGCTACTCTC
TCACCGTGTACAACCGCACCAAGGCCAAAGCACAACCGCTCCTCGATCTG
GGCGCCGAGTACGCCGACACCCCCGCCGAGGTTGCCGCCGTCTCCGACAT
CGTCTTTACCATGGTCGGTTATCCCTCTGACGTGCGTCAAGTCATCTCCG
GCTCGCACGGCTTGCTGTCCACCCTCAAGGAGGGTGGTATTATCGTCGAT
CTCACCACCTCCGAGCCCGGTCTCGCTGCAGAGCTTGCCGCCTTGGCCCA
GGCCTCCGACAAGTATGTCGTGGACGCCCCGGTCACCGGCGGCGACATTG
GCGCCAAGAACGGCACCCTCAGCATCATGGTCGGTGGCGATACGCGCGCC
GTTGAGCGCGTGCAGCCAGTACTCAAGTGCTTCGCCCACACTGTCACCGT
GTTTGCTGGGCCTGGAACAGGACAGCATTGCAAGATGGCGAATCAAATCA
CCATTGCCACCTCTATGTTGGGCATGTGTGAGGGTCTCATGTACGCGCAT
GCTGCCGGTCTGGATCTAGAGAGCTACCTTGCCGCCATTGCCGGCGGTGG
TGCCGGATCGTTTTCTGTCAAGTCGTATGCACCCAGAATACTCAAGGGTG
ACATGAACCCGGGTTTCTACGTCGAACATTTTGTAAAAGACCTTGGCATC
GCGTTGGAGGCCTGCAGGCAGATGGGTGTTTCTCTTCCGGGCCTGGCGCT
TGCTCAGCAGCTGTACGTGTCGCTGTCAGCTTGTGGTGATCAGCGAATGG
GAACGCAGGCACTGATCAGGTCGTTGGAGAGGATCAATGGTCGGCAGCTA
CCTACTAAAGACACTTTTACCGCATGGTAA

Coding sequence (CDS) from alignment at tig00000138_pilon:84543..85472+

>Gchil10675.t1 ID=Gchil10675.t1|Name=Gchil10675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000138_pilon:84543..85472+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCAGCCTCGCCGTCAAACACTTCCATCGGATGGATCGGAACCGG
TGTCATGGGTCGTCACATGGCCACCCATGTCATCAAAGCCGGCTACTCTC
TCACCGTGTACAACCGCACCAAGGCCAAAGCACAACCGCTCCTCGATCTG
GGCGCCGAGTACGCCGACACCCCCGCCGAGGTTGCCGCCGTCTCCGACAT
CGTCTTTACCATGGTCGGTTATCCCTCTGACGTGCGTCAAGTCATCTCCG
GCTCGCACGGCTTGCTGTCCACCCTCAAGGAGGGTGGTATTATCGTCGAT
CTCACCACCTCCGAGCCCGGTCTCGCTGCAGAGCTTGCCGCCTTGGCCCA
GGCCTCCGACAAGTATGTCGTGGACGCCCCGGTCACCGGCGGCGACATTG
GCGCCAAGAACGGCACCCTCAGCATCATGGTCGGTGGCGATACGCGCGCC
GTTGAGCGCGTGCAGCCAGTACTCAAGTGCTTCGCCCACACTGTCACCGT
GTTTGCTGGGCCTGGAACAGGACAGCATTGCAAGATGGCGAATCAAATCA
CCATTGCCACCTCTATGTTGGGCATGTGTGAGGGTCTCATGTACGCGCAT
GCTGCCGGTCTGGATCTAGAGAGCTACCTTGCCGCCATTGCCGGCGGTGG
TGCCGGATCGTTTTCTGTCAAGTCGTATGCACCCAGAATACTCAAGGGTG
ACATGAACCCGGGTTTCTACGTCGAACATTTTGTAAAAGACCTTGGCATC
GCGTTGGAGGCCTGCAGGCAGATGGGTGTTTCTCTTCCGGGCCTGGCGCT
TGCTCAGCAGCTGTACGTGTCGCTGTCAGCTTGTGGTGATCAGCGAATGG
GAACGCAGGCACTGATCAGGTCGTTGGAGAGGATCAATGGTCGGCAGCTA
CCTACTAAAGACACTTTTACCGCATGGTAA