Gchil10576.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10576.t1
Unique NameGchil10576.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length660
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:758481..760460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704314.1
PFAMsAAA_11,AAA_12
Max annot lvl2759|Eukaryota
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Evalue1.8e-92
EggNOG OGsCOG1112@1|root,KOG1802@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10576Gchil10576Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 758481..760460 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10576.t1.stop1Gchil10576.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 758481..758483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10576.t1.CDS1Gchil10576.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 758481..760460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10576.t1.exon1Gchil10576.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 758481..760460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10576.t1.start1Gchil10576.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 760458..760460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10576.t1Gchil10576.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 758481..760460 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10576.t1 ID=Gchil10576.t1|Name=Gchil10576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp
MDKYRSHFEPLLDKELEAEQEQLRLLRSVDAPGLRLDNLAVSRIRRLFSS
IIYSLESRTVLSRSRFGKGDLIDISYKTETVEAVILSRQPQKILITVPVG
SEAEDRMSVFAAARARVSAESGVNTLSYERALAAVGFFTKGTPLPSANAR
LIVMSFMEEETRKPINFRNPFSSISLKRADSSTTLNPWTNQASEKVTSFQ
EELANKVVNQLKQDLNKSQVRAIKAALRRKLTLIQGPPGTGKTYTAAHLI
SCARQLGLRPILACAGTNVATDNLMRKIVAVCPKSKVVRLGRISAMEEDI
WKSSLDSFLERNEKVRCARQEAERGSDADLRTVEKEVAKGILEHADVVVA
TCVGSGRDEIKGFEFSFIVIDEATQVTEPDSLIPFSCSQSFNSQCVLIGD
HCQLPPTVLSTKPNMKGSGLEVSLFLRLWACGIQVQLLDTQYRMHPDISR
FPSSHFYSGMLRNGVRSEERPAPASLNEHARFLFEEGRSLFCNIDSGTEE
SASGSPRLANTGTSFLNKAEAQAVLKIISLITHGSELQHECYPKPLEKIE
IGIISPYEGQVRLLHDMLGSNGKPGMKISTVDSFQGQEKDVIIVSTVRSN
ENGKTGFLQDWRRLNVSITRARLLLIVVGHQKTLCHDPHWRAWIKAHPKA
DVPKLMGRL*
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spliced messenger RNA

>Gchil10576.t1 ID=Gchil10576.t1|Name=Gchil10576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00000159_pilon:758481..760460- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAAGTACAGGAGCCACTTTGAGCCTCTTTTGGACAAGGAATTGGA
AGCGGAGCAAGAGCAATTGCGGCTGTTACGCTCCGTAGATGCTCCGGGCC
TACGGCTCGATAATCTTGCTGTTTCTCGTATTCGTAGGCTGTTTTCTAGT
ATCATATACTCCTTGGAATCACGTACTGTTCTCTCACGCTCGCGATTTGG
AAAAGGAGATCTGATTGATATCTCTTACAAAACTGAAACTGTTGAGGCTG
TAATCCTCTCACGACAGCCGCAGAAGATACTCATAACTGTTCCTGTCGGT
TCAGAGGCTGAGGATCGCATGAGTGTTTTTGCCGCCGCTAGAGCCCGCGT
TTCTGCGGAATCCGGTGTGAACACACTCAGCTACGAACGAGCCCTTGCGG
CCGTGGGCTTCTTCACGAAAGGAACTCCTTTGCCTTCCGCAAACGCTCGC
CTCATTGTCATGTCTTTCATGGAAGAAGAGACACGAAAACCAATCAATTT
TCGAAACCCTTTCAGTAGCATCTCGCTAAAACGAGCAGATTCATCCACTA
CTTTGAACCCTTGGACAAACCAAGCTAGCGAGAAAGTAACTTCTTTCCAA
GAAGAACTTGCAAACAAAGTGGTGAACCAACTGAAGCAGGATCTTAACAA
AAGCCAAGTACGAGCGATAAAGGCGGCTTTACGCCGAAAATTGACTCTTA
TTCAGGGTCCACCAGGAACGGGAAAAACTTACACCGCTGCTCATCTGATC
TCATGTGCTCGCCAGCTTGGCCTACGGCCAATACTTGCTTGCGCCGGAAC
AAACGTTGCCACTGATAATCTAATGCGCAAAATAGTGGCAGTATGTCCCA
AATCAAAAGTAGTTCGTCTTGGTAGAATTTCTGCCATGGAAGAAGACATT
TGGAAAAGCTCGCTGGACAGTTTTCTTGAACGAAACGAAAAGGTCCGCTG
TGCACGACAAGAAGCCGAGCGAGGCAGTGATGCAGATCTAAGGACTGTCG
AAAAAGAAGTTGCGAAAGGGATTCTGGAGCATGCAGATGTGGTTGTTGCC
ACATGTGTTGGATCTGGGAGGGACGAGATTAAGGGGTTTGAATTCTCTTT
CATTGTCATAGACGAAGCAACGCAAGTGACTGAACCGGATTCCCTTATTC
CATTTTCTTGCTCGCAAAGCTTCAACTCACAATGTGTGCTTATTGGGGAT
CACTGTCAATTGCCTCCGACCGTTTTATCTACAAAACCCAACATGAAAGG
CTCTGGACTTGAAGTAAGCCTATTTCTGAGGCTATGGGCATGTGGTATAC
AGGTACAACTGCTCGATACGCAATATCGAATGCACCCTGATATATCCCGT
TTCCCAAGCTCTCACTTTTATTCAGGTATGTTGCGAAATGGTGTAAGGTC
TGAAGAGCGCCCTGCCCCCGCCAGCTTAAATGAGCACGCGAGATTTCTTT
TTGAAGAAGGCCGTTCGCTTTTTTGTAATATTGACAGCGGTACCGAAGAA
AGTGCATCTGGCTCACCTAGACTAGCAAATACAGGTACGTCGTTCTTGAA
TAAGGCTGAAGCTCAAGCCGTACTGAAAATTATCTCGCTTATCACACATG
GGAGTGAGCTGCAGCATGAGTGCTACCCGAAACCCCTGGAAAAGATTGAA
ATCGGGATCATATCACCATATGAGGGCCAAGTTCGTCTCTTACATGATAT
GTTAGGGTCCAATGGCAAACCGGGAATGAAAATAAGCACAGTAGATTCCT
TCCAAGGACAGGAAAAAGATGTAATCATTGTCTCAACTGTCCGCAGTAAC
GAAAACGGAAAGACTGGGTTTTTGCAGGATTGGCGGAGATTGAATGTCAG
CATCACACGAGCGCGCCTGCTCCTGATCGTAGTAGGTCACCAAAAAACGC
TTTGCCACGATCCGCACTGGCGAGCTTGGATAAAGGCACACCCAAAAGCC
GATGTCCCAAAGCTCATGGGTCGATTATGA
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protein sequence of Gchil10576.t1

>Gchil10576.t1 ID=Gchil10576.t1|Name=Gchil10576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=660bp
MDKYRSHFEPLLDKELEAEQEQLRLLRSVDAPGLRLDNLAVSRIRRLFSS
IIYSLESRTVLSRSRFGKGDLIDISYKTETVEAVILSRQPQKILITVPVG
SEAEDRMSVFAAARARVSAESGVNTLSYERALAAVGFFTKGTPLPSANAR
LIVMSFMEEETRKPINFRNPFSSISLKRADSSTTLNPWTNQASEKVTSFQ
EELANKVVNQLKQDLNKSQVRAIKAALRRKLTLIQGPPGTGKTYTAAHLI
SCARQLGLRPILACAGTNVATDNLMRKIVAVCPKSKVVRLGRISAMEEDI
WKSSLDSFLERNEKVRCARQEAERGSDADLRTVEKEVAKGILEHADVVVA
TCVGSGRDEIKGFEFSFIVIDEATQVTEPDSLIPFSCSQSFNSQCVLIGD
HCQLPPTVLSTKPNMKGSGLEVSLFLRLWACGIQVQLLDTQYRMHPDISR
FPSSHFYSGMLRNGVRSEERPAPASLNEHARFLFEEGRSLFCNIDSGTEE
SASGSPRLANTGTSFLNKAEAQAVLKIISLITHGSELQHECYPKPLEKIE
IGIISPYEGQVRLLHDMLGSNGKPGMKISTVDSFQGQEKDVIIVSTVRSN
ENGKTGFLQDWRRLNVSITRARLLLIVVGHQKTLCHDPHWRAWIKAHPKA
DVPKLMGRL*
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mRNA from alignment at tig00000159_pilon:758481..760460-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10576.t1 ID=Gchil10576.t1|Name=Gchil10576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00000159_pilon:758481..760460- (Gracilaria chilensis NLEC103_M9 male)
ATGGATAAGTACAGGAGCCACTTTGAGCCTCTTTTGGACAAGGAATTGGA
AGCGGAGCAAGAGCAATTGCGGCTGTTACGCTCCGTAGATGCTCCGGGCC
TACGGCTCGATAATCTTGCTGTTTCTCGTATTCGTAGGCTGTTTTCTAGT
ATCATATACTCCTTGGAATCACGTACTGTTCTCTCACGCTCGCGATTTGG
AAAAGGAGATCTGATTGATATCTCTTACAAAACTGAAACTGTTGAGGCTG
TAATCCTCTCACGACAGCCGCAGAAGATACTCATAACTGTTCCTGTCGGT
TCAGAGGCTGAGGATCGCATGAGTGTTTTTGCCGCCGCTAGAGCCCGCGT
TTCTGCGGAATCCGGTGTGAACACACTCAGCTACGAACGAGCCCTTGCGG
CCGTGGGCTTCTTCACGAAAGGAACTCCTTTGCCTTCCGCAAACGCTCGC
CTCATTGTCATGTCTTTCATGGAAGAAGAGACACGAAAACCAATCAATTT
TCGAAACCCTTTCAGTAGCATCTCGCTAAAACGAGCAGATTCATCCACTA
CTTTGAACCCTTGGACAAACCAAGCTAGCGAGAAAGTAACTTCTTTCCAA
GAAGAACTTGCAAACAAAGTGGTGAACCAACTGAAGCAGGATCTTAACAA
AAGCCAAGTACGAGCGATAAAGGCGGCTTTACGCCGAAAATTGACTCTTA
TTCAGGGTCCACCAGGAACGGGAAAAACTTACACCGCTGCTCATCTGATC
TCATGTGCTCGCCAGCTTGGCCTACGGCCAATACTTGCTTGCGCCGGAAC
AAACGTTGCCACTGATAATCTAATGCGCAAAATAGTGGCAGTATGTCCCA
AATCAAAAGTAGTTCGTCTTGGTAGAATTTCTGCCATGGAAGAAGACATT
TGGAAAAGCTCGCTGGACAGTTTTCTTGAACGAAACGAAAAGGTCCGCTG
TGCACGACAAGAAGCCGAGCGAGGCAGTGATGCAGATCTAAGGACTGTCG
AAAAAGAAGTTGCGAAAGGGATTCTGGAGCATGCAGATGTGGTTGTTGCC
ACATGTGTTGGATCTGGGAGGGACGAGATTAAGGGGTTTGAATTCTCTTT
CATTGTCATAGACGAAGCAACGCAAGTGACTGAACCGGATTCCCTTATTC
CATTTTCTTGCTCGCAAAGCTTCAACTCACAATGTGTGCTTATTGGGGAT
CACTGTCAATTGCCTCCGACCGTTTTATCTACAAAACCCAACATGAAAGG
CTCTGGACTTGAAGTAAGCCTATTTCTGAGGCTATGGGCATGTGGTATAC
AGGTACAACTGCTCGATACGCAATATCGAATGCACCCTGATATATCCCGT
TTCCCAAGCTCTCACTTTTATTCAGGTATGTTGCGAAATGGTGTAAGGTC
TGAAGAGCGCCCTGCCCCCGCCAGCTTAAATGAGCACGCGAGATTTCTTT
TTGAAGAAGGCCGTTCGCTTTTTTGTAATATTGACAGCGGTACCGAAGAA
AGTGCATCTGGCTCACCTAGACTAGCAAATACAGGTACGTCGTTCTTGAA
TAAGGCTGAAGCTCAAGCCGTACTGAAAATTATCTCGCTTATCACACATG
GGAGTGAGCTGCAGCATGAGTGCTACCCGAAACCCCTGGAAAAGATTGAA
ATCGGGATCATATCACCATATGAGGGCCAAGTTCGTCTCTTACATGATAT
GTTAGGGTCCAATGGCAAACCGGGAATGAAAATAAGCACAGTAGATTCCT
TCCAAGGACAGGAAAAAGATGTAATCATTGTCTCAACTGTCCGCAGTAAC
GAAAACGGAAAGACTGGGTTTTTGCAGGATTGGCGGAGATTGAATGTCAG
CATCACACGAGCGCGCCTGCTCCTGATCGTAGTAGGTCACCAAAAAACGC
TTTGCCACGATCCGCACTGGCGAGCTTGGATAAAGGCACACCCAAAAGCC
GATGTCCCAAAGCTCATGGGTCGATTATGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:758481..760460-

>Gchil10576.t1 ID=Gchil10576.t1|Name=Gchil10576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1980bp|location=Sequence derived from alignment at tig00000159_pilon:758481..760460- (Gracilaria chilensis NLEC103_M9 male)
ATGGATAAGTACAGGAGCCACTTTGAGCCTCTTTTGGACAAGGAATTGGA
AGCGGAGCAAGAGCAATTGCGGCTGTTACGCTCCGTAGATGCTCCGGGCC
TACGGCTCGATAATCTTGCTGTTTCTCGTATTCGTAGGCTGTTTTCTAGT
ATCATATACTCCTTGGAATCACGTACTGTTCTCTCACGCTCGCGATTTGG
AAAAGGAGATCTGATTGATATCTCTTACAAAACTGAAACTGTTGAGGCTG
TAATCCTCTCACGACAGCCGCAGAAGATACTCATAACTGTTCCTGTCGGT
TCAGAGGCTGAGGATCGCATGAGTGTTTTTGCCGCCGCTAGAGCCCGCGT
TTCTGCGGAATCCGGTGTGAACACACTCAGCTACGAACGAGCCCTTGCGG
CCGTGGGCTTCTTCACGAAAGGAACTCCTTTGCCTTCCGCAAACGCTCGC
CTCATTGTCATGTCTTTCATGGAAGAAGAGACACGAAAACCAATCAATTT
TCGAAACCCTTTCAGTAGCATCTCGCTAAAACGAGCAGATTCATCCACTA
CTTTGAACCCTTGGACAAACCAAGCTAGCGAGAAAGTAACTTCTTTCCAA
GAAGAACTTGCAAACAAAGTGGTGAACCAACTGAAGCAGGATCTTAACAA
AAGCCAAGTACGAGCGATAAAGGCGGCTTTACGCCGAAAATTGACTCTTA
TTCAGGGTCCACCAGGAACGGGAAAAACTTACACCGCTGCTCATCTGATC
TCATGTGCTCGCCAGCTTGGCCTACGGCCAATACTTGCTTGCGCCGGAAC
AAACGTTGCCACTGATAATCTAATGCGCAAAATAGTGGCAGTATGTCCCA
AATCAAAAGTAGTTCGTCTTGGTAGAATTTCTGCCATGGAAGAAGACATT
TGGAAAAGCTCGCTGGACAGTTTTCTTGAACGAAACGAAAAGGTCCGCTG
TGCACGACAAGAAGCCGAGCGAGGCAGTGATGCAGATCTAAGGACTGTCG
AAAAAGAAGTTGCGAAAGGGATTCTGGAGCATGCAGATGTGGTTGTTGCC
ACATGTGTTGGATCTGGGAGGGACGAGATTAAGGGGTTTGAATTCTCTTT
CATTGTCATAGACGAAGCAACGCAAGTGACTGAACCGGATTCCCTTATTC
CATTTTCTTGCTCGCAAAGCTTCAACTCACAATGTGTGCTTATTGGGGAT
CACTGTCAATTGCCTCCGACCGTTTTATCTACAAAACCCAACATGAAAGG
CTCTGGACTTGAAGTAAGCCTATTTCTGAGGCTATGGGCATGTGGTATAC
AGGTACAACTGCTCGATACGCAATATCGAATGCACCCTGATATATCCCGT
TTCCCAAGCTCTCACTTTTATTCAGGTATGTTGCGAAATGGTGTAAGGTC
TGAAGAGCGCCCTGCCCCCGCCAGCTTAAATGAGCACGCGAGATTTCTTT
TTGAAGAAGGCCGTTCGCTTTTTTGTAATATTGACAGCGGTACCGAAGAA
AGTGCATCTGGCTCACCTAGACTAGCAAATACAGGTACGTCGTTCTTGAA
TAAGGCTGAAGCTCAAGCCGTACTGAAAATTATCTCGCTTATCACACATG
GGAGTGAGCTGCAGCATGAGTGCTACCCGAAACCCCTGGAAAAGATTGAA
ATCGGGATCATATCACCATATGAGGGCCAAGTTCGTCTCTTACATGATAT
GTTAGGGTCCAATGGCAAACCGGGAATGAAAATAAGCACAGTAGATTCCT
TCCAAGGACAGGAAAAAGATGTAATCATTGTCTCAACTGTCCGCAGTAAC
GAAAACGGAAAGACTGGGTTTTTGCAGGATTGGCGGAGATTGAATGTCAG
CATCACACGAGCGCGCCTGCTCCTGATCGTAGTAGGTCACCAAAAAACGC
TTTGCCACGATCCGCACTGGCGAGCTTGGATAAAGGCACACCCAAAAGCC
GATGTCCCAAAGCTCATGGGTCGATTATGA
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