Gchil10572.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10572.t1
Unique NameGchil10572.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:742927..744327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707001.1
PFAMsPkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG koko:K04424,ko:K08847
KEGG Pathwayko04010,ko04217,ko04621,ko04623,ko04668,map04010,map04217,map04621,map04623,map04668
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue5.23e-108
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.1,2.7.11.25
Descriptionprotein kinase activity
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10572Gchil10572Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 742927..744327 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10572.t1.stop1Gchil10572.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 742927..742929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10572.t1.CDS1Gchil10572.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 742927..744327 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10572.t1.exon1Gchil10572.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 742927..744327 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10572.t1.start1Gchil10572.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 744325..744327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10572.t1Gchil10572.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 742927..744327 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10572.t1 ID=Gchil10572.t1|Name=Gchil10572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=467bp
MVIFGRKKKKSEANPDSFDRSVSYDTSGTPRSISFGPPSFSLRGNGFYKA
LASSSKSLRVRKKAFGEGLFSPTTPNGQGAFEEMQEAISREADGNKSQTS
NTVSHHSVSVLPPMSPTMAAIHARTMENVARQERASRIDQFSQKSESSGD
VADVIRKIQKLEELPDRLETGRTLSSKSSFPSNTDSTQEGLSEHWVIDSN
DVEIGKTIGHSSFGTVNEGRFNGTKVAVKTIHHGSGSNPLDGSCTFRKEA
ELNCKLRHPNIVLFMGIAMEPSKICIVTELMSRGNVRDLLVSKVKGKLRR
LDWSLRQQWALDTAQGMAYLHSLRPPMIHRDLKTTNLLVDKGMNVKICDF
GLSRFMSDKLMTAVGTVHFAAPEVLNHEKYTEKADLFSFGTVMWELYTRK
CIFRGLPQIEVYSQVVSGNMPDVDENCDARYRALMKECWATDPTKRPSFR
EVIDRLSVLVDELDSE*
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spliced messenger RNA

>Gchil10572.t1 ID=Gchil10572.t1|Name=Gchil10572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000159_pilon:742927..744327- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATCTTTGGTCGAAAGAAGAAGAAGAGTGAAGCGAATCCGGACAG
CTTCGACCGGTCCGTGTCGTACGACACTTCCGGTACGCCCAGGTCCATAT
CATTTGGACCTCCTTCATTTAGCCTTCGCGGAAATGGATTCTACAAGGCC
CTCGCATCCAGCAGCAAATCTCTCAGGGTTCGGAAGAAAGCGTTTGGGGA
GGGACTTTTTTCACCGACAACACCGAACGGGCAAGGTGCATTTGAAGAGA
TGCAAGAAGCCATCTCACGCGAGGCCGATGGAAACAAATCTCAAACGTCA
AACACTGTCTCGCATCATAGTGTCTCAGTGCTGCCGCCCATGTCTCCGAC
GATGGCAGCCATCCATGCGCGAACGATGGAAAATGTTGCTAGACAAGAGC
GTGCGAGTAGAATTGACCAATTCTCTCAGAAATCTGAGAGTTCAGGTGAT
GTTGCTGATGTCATACGAAAGATACAAAAACTGGAAGAACTTCCTGATCG
TCTGGAGACAGGTCGCACATTAAGTTCGAAGTCATCGTTTCCCTCGAATA
CAGATTCGACCCAGGAGGGCCTATCGGAGCATTGGGTGATTGATTCGAAC
GATGTAGAGATAGGTAAGACTATCGGGCACAGCTCTTTTGGTACTGTTAA
TGAAGGCAGGTTTAATGGTACAAAGGTCGCCGTGAAAACAATTCATCACG
GCTCGGGCTCAAATCCTTTAGATGGTAGCTGCACGTTTAGAAAAGAAGCA
GAACTTAACTGCAAACTTCGACACCCCAACATTGTTTTGTTCATGGGAAT
AGCAATGGAGCCCTCCAAGATCTGTATTGTAACCGAGCTCATGTCGAGGG
GCAACGTCCGTGACTTGCTGGTCTCAAAAGTGAAGGGTAAGCTACGCCGA
CTGGATTGGAGTTTGCGACAGCAATGGGCTTTGGATACGGCACAAGGTAT
GGCGTACTTGCACTCGTTAAGACCTCCGATGATTCATCGGGACCTCAAAA
CTACCAACCTACTAGTGGACAAAGGAATGAATGTGAAAATTTGCGACTTC
GGTCTCTCGCGCTTCATGTCTGACAAGCTGATGACCGCTGTAGGTACTGT
GCATTTCGCCGCCCCGGAAGTTTTGAACCACGAGAAGTACACTGAAAAAG
CGGACTTGTTTTCTTTTGGCACTGTGATGTGGGAATTGTATACAAGGAAA
TGTATATTCCGGGGACTTCCTCAGATAGAGGTGTACAGTCAAGTAGTTTC
TGGAAACATGCCAGACGTGGATGAGAACTGTGATGCACGATATAGGGCGT
TGATGAAAGAATGTTGGGCAACGGATCCCACGAAGCGACCATCTTTCCGG
GAGGTTATTGATCGGCTGAGTGTATTAGTCGATGAACTTGACTCGGAGTG
A
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protein sequence of Gchil10572.t1

>Gchil10572.t1 ID=Gchil10572.t1|Name=Gchil10572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=467bp
MVIFGRKKKKSEANPDSFDRSVSYDTSGTPRSISFGPPSFSLRGNGFYKA
LASSSKSLRVRKKAFGEGLFSPTTPNGQGAFEEMQEAISREADGNKSQTS
NTVSHHSVSVLPPMSPTMAAIHARTMENVARQERASRIDQFSQKSESSGD
VADVIRKIQKLEELPDRLETGRTLSSKSSFPSNTDSTQEGLSEHWVIDSN
DVEIGKTIGHSSFGTVNEGRFNGTKVAVKTIHHGSGSNPLDGSCTFRKEA
ELNCKLRHPNIVLFMGIAMEPSKICIVTELMSRGNVRDLLVSKVKGKLRR
LDWSLRQQWALDTAQGMAYLHSLRPPMIHRDLKTTNLLVDKGMNVKICDF
GLSRFMSDKLMTAVGTVHFAAPEVLNHEKYTEKADLFSFGTVMWELYTRK
CIFRGLPQIEVYSQVVSGNMPDVDENCDARYRALMKECWATDPTKRPSFR
EVIDRLSVLVDELDSE*
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mRNA from alignment at tig00000159_pilon:742927..744327-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10572.t1 ID=Gchil10572.t1|Name=Gchil10572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000159_pilon:742927..744327- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATCTTTGGTCGAAAGAAGAAGAAGAGTGAAGCGAATCCGGACAG
CTTCGACCGGTCCGTGTCGTACGACACTTCCGGTACGCCCAGGTCCATAT
CATTTGGACCTCCTTCATTTAGCCTTCGCGGAAATGGATTCTACAAGGCC
CTCGCATCCAGCAGCAAATCTCTCAGGGTTCGGAAGAAAGCGTTTGGGGA
GGGACTTTTTTCACCGACAACACCGAACGGGCAAGGTGCATTTGAAGAGA
TGCAAGAAGCCATCTCACGCGAGGCCGATGGAAACAAATCTCAAACGTCA
AACACTGTCTCGCATCATAGTGTCTCAGTGCTGCCGCCCATGTCTCCGAC
GATGGCAGCCATCCATGCGCGAACGATGGAAAATGTTGCTAGACAAGAGC
GTGCGAGTAGAATTGACCAATTCTCTCAGAAATCTGAGAGTTCAGGTGAT
GTTGCTGATGTCATACGAAAGATACAAAAACTGGAAGAACTTCCTGATCG
TCTGGAGACAGGTCGCACATTAAGTTCGAAGTCATCGTTTCCCTCGAATA
CAGATTCGACCCAGGAGGGCCTATCGGAGCATTGGGTGATTGATTCGAAC
GATGTAGAGATAGGTAAGACTATCGGGCACAGCTCTTTTGGTACTGTTAA
TGAAGGCAGGTTTAATGGTACAAAGGTCGCCGTGAAAACAATTCATCACG
GCTCGGGCTCAAATCCTTTAGATGGTAGCTGCACGTTTAGAAAAGAAGCA
GAACTTAACTGCAAACTTCGACACCCCAACATTGTTTTGTTCATGGGAAT
AGCAATGGAGCCCTCCAAGATCTGTATTGTAACCGAGCTCATGTCGAGGG
GCAACGTCCGTGACTTGCTGGTCTCAAAAGTGAAGGGTAAGCTACGCCGA
CTGGATTGGAGTTTGCGACAGCAATGGGCTTTGGATACGGCACAAGGTAT
GGCGTACTTGCACTCGTTAAGACCTCCGATGATTCATCGGGACCTCAAAA
CTACCAACCTACTAGTGGACAAAGGAATGAATGTGAAAATTTGCGACTTC
GGTCTCTCGCGCTTCATGTCTGACAAGCTGATGACCGCTGTAGGTACTGT
GCATTTCGCCGCCCCGGAAGTTTTGAACCACGAGAAGTACACTGAAAAAG
CGGACTTGTTTTCTTTTGGCACTGTGATGTGGGAATTGTATACAAGGAAA
TGTATATTCCGGGGACTTCCTCAGATAGAGGTGTACAGTCAAGTAGTTTC
TGGAAACATGCCAGACGTGGATGAGAACTGTGATGCACGATATAGGGCGT
TGATGAAAGAATGTTGGGCAACGGATCCCACGAAGCGACCATCTTTCCGG
GAGGTTATTGATCGGCTGAGTGTATTAGTCGATGAACTTGACTCGGAGTG
A
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Coding sequence (CDS) from alignment at tig00000159_pilon:742927..744327-

>Gchil10572.t1 ID=Gchil10572.t1|Name=Gchil10572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000159_pilon:742927..744327- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATCTTTGGTCGAAAGAAGAAGAAGAGTGAAGCGAATCCGGACAG
CTTCGACCGGTCCGTGTCGTACGACACTTCCGGTACGCCCAGGTCCATAT
CATTTGGACCTCCTTCATTTAGCCTTCGCGGAAATGGATTCTACAAGGCC
CTCGCATCCAGCAGCAAATCTCTCAGGGTTCGGAAGAAAGCGTTTGGGGA
GGGACTTTTTTCACCGACAACACCGAACGGGCAAGGTGCATTTGAAGAGA
TGCAAGAAGCCATCTCACGCGAGGCCGATGGAAACAAATCTCAAACGTCA
AACACTGTCTCGCATCATAGTGTCTCAGTGCTGCCGCCCATGTCTCCGAC
GATGGCAGCCATCCATGCGCGAACGATGGAAAATGTTGCTAGACAAGAGC
GTGCGAGTAGAATTGACCAATTCTCTCAGAAATCTGAGAGTTCAGGTGAT
GTTGCTGATGTCATACGAAAGATACAAAAACTGGAAGAACTTCCTGATCG
TCTGGAGACAGGTCGCACATTAAGTTCGAAGTCATCGTTTCCCTCGAATA
CAGATTCGACCCAGGAGGGCCTATCGGAGCATTGGGTGATTGATTCGAAC
GATGTAGAGATAGGTAAGACTATCGGGCACAGCTCTTTTGGTACTGTTAA
TGAAGGCAGGTTTAATGGTACAAAGGTCGCCGTGAAAACAATTCATCACG
GCTCGGGCTCAAATCCTTTAGATGGTAGCTGCACGTTTAGAAAAGAAGCA
GAACTTAACTGCAAACTTCGACACCCCAACATTGTTTTGTTCATGGGAAT
AGCAATGGAGCCCTCCAAGATCTGTATTGTAACCGAGCTCATGTCGAGGG
GCAACGTCCGTGACTTGCTGGTCTCAAAAGTGAAGGGTAAGCTACGCCGA
CTGGATTGGAGTTTGCGACAGCAATGGGCTTTGGATACGGCACAAGGTAT
GGCGTACTTGCACTCGTTAAGACCTCCGATGATTCATCGGGACCTCAAAA
CTACCAACCTACTAGTGGACAAAGGAATGAATGTGAAAATTTGCGACTTC
GGTCTCTCGCGCTTCATGTCTGACAAGCTGATGACCGCTGTAGGTACTGT
GCATTTCGCCGCCCCGGAAGTTTTGAACCACGAGAAGTACACTGAAAAAG
CGGACTTGTTTTCTTTTGGCACTGTGATGTGGGAATTGTATACAAGGAAA
TGTATATTCCGGGGACTTCCTCAGATAGAGGTGTACAGTCAAGTAGTTTC
TGGAAACATGCCAGACGTGGATGAGAACTGTGATGCACGATATAGGGCGT
TGATGAAAGAATGTTGGGCAACGGATCCCACGAAGCGACCATCTTTCCGG
GAGGTTATTGATCGGCTGAGTGTATTAGTCGATGAACTTGACTCGGAGTG
A
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