Gchil10539.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10539.t1
Unique NameGchil10539.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:547297..548385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10539Gchil10539Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 547297..548385 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10539.t1.start1Gchil10539.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 547297..547299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10539.t1.CDS1Gchil10539.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 547297..548385 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10539.t1.exon1Gchil10539.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 547297..548385 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10539.t1.stop1Gchil10539.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 548383..548385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10539.t1Gchil10539.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 547297..548385 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10539.t1 ID=Gchil10539.t1|Name=Gchil10539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=363bp
MSAAGEEEGAQTAALRCELASLKPLADALSCMASPSRAHDVQLWHSAADG
LRLSTTAESHHASVILPPAAFTRLHAAPHLQQHPIRLNLSALQHALSALG
ALGARSAPVHLTFSDATLRARTAQPGCVVRVALAALCAPPSSSPSNLATS
WRVADANAPPLAEFILGADALRDALNDVQCAGAELVRIAFEPHAPCVRLV
APAHARGDMACVAVELSRCTPRFQLLQCRRSCAVVVSTRLLLHTAPALQI
ADSVKLALSDHDVLTVVCKLRGLTAEHRTFVEFVLLPQERHSHHDEHHTH
DDERHRNSEERHRYDDDRDNYQHERHSYHRESDSRDDAPRDHHHNHALAE
ESDPDHHSSFVF*
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spliced messenger RNA

>Gchil10539.t1 ID=Gchil10539.t1|Name=Gchil10539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000159_pilon:547297..548385+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGGCGGGGGAGGAGGAAGGGGCGCAGACGGCGGCGCTTCGCTG
CGAGCTGGCGTCGCTCAAGCCACTGGCcgacgcgctgtcgtgcatggcgt
cgccgtcgcgcgcgcacgacgTACAGCTGTGGCACAGCGCCGCCGACGGG
CTGCGGCTGAGCACGACGGCGGAGTCGCACCACGCCAGCGTCATCCTGCC
GCCGGCCGCCTTCACGCGTCTACACGCCGCGCCGCACCTACAGCAGCACC
CCATCCGCCTCAACCTATCCGCTCTGCAGCATGCGCTGAGCGCGCTAGGC
GCGCTGGGCGCGCGCTCCGCCCCCGTCCACCTCACCTTCTCCGACGCTAC
GCTACGCGCGCGCACCGCCCAGCCCGGCTGCGTCGTGCGCGTCGCCCTGG
CTGCTCTTTGCGCCCCACCGTCGTCATCGCCGTCGAACTTGGCCACTTCG
TGGCGCGTGGCTGATGCAAACGCCCCCCCGTTGGCCGAGTTCATTCTAGG
CGCCGACGCGCTGCGCGACGCGTTGAACGACGTGCAGTGCGCTGGCGCGG
AGCTCGTGCGTATCGCCTTTGAGCCGCACGCGCCCTGTGTTCGTCTTGTA
GCGCCGGCGCACGCGCGTGGTGATATGGCGTGCGTCGCCGTCGAACTGTC
GCGTTGCACCCCGCGCTTTCAGCTGTTGCAGTGTCGACGCTCATGCGCTG
TTGTTGTTTCTACTCGCCTTTTGTTGCATACCGCCCCTGCGTTGCAGATC
GCCGATAGCGTCAAGCTTGCGCTTAGCGACCATGACGTGCTCACCGTCGT
GTGCAAGCTACGCGGCCTCACCGCCGAGCACCGCACTTTTGTCGAGTTTG
TGCTGCTCCCGCAAGAGCGCCACTCCCATCACGACGAACATCATACTCAC
GACGACGAGCGCCACCGCAACAGCGAAGAGCGCCACCGCTACGACGACGA
CCGTGACAACTACCAACACGAGCGCCACAGCTACCACCGCGAGAGCGACA
GCCGCGATGACGCGCCCCGCGACCACCACCACAATCACGCCCTCGCTGAG
GAATCCGACCCCGACCACCATTCGAGCTTCGTTTTCTAA
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protein sequence of Gchil10539.t1

>Gchil10539.t1 ID=Gchil10539.t1|Name=Gchil10539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=363bp
MSAAGEEEGAQTAALRCELASLKPLADALSCMASPSRAHDVQLWHSAADG
LRLSTTAESHHASVILPPAAFTRLHAAPHLQQHPIRLNLSALQHALSALG
ALGARSAPVHLTFSDATLRARTAQPGCVVRVALAALCAPPSSSPSNLATS
WRVADANAPPLAEFILGADALRDALNDVQCAGAELVRIAFEPHAPCVRLV
APAHARGDMACVAVELSRCTPRFQLLQCRRSCAVVVSTRLLLHTAPALQI
ADSVKLALSDHDVLTVVCKLRGLTAEHRTFVEFVLLPQERHSHHDEHHTH
DDERHRNSEERHRYDDDRDNYQHERHSYHRESDSRDDAPRDHHHNHALAE
ESDPDHHSSFVF*
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mRNA from alignment at tig00000159_pilon:547297..548385+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10539.t1 ID=Gchil10539.t1|Name=Gchil10539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000159_pilon:547297..548385+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCGGCGGGGGAGGAGGAAGGGGCGCAGACGGCGGCGCTTCGCTG
CGAGCTGGCGTCGCTCAAGCCACTGGCcgacgcgctgtcgtgcatggcgt
cgccgtcgcgcgcgcacgacgTACAGCTGTGGCACAGCGCCGCCGACGGG
CTGCGGCTGAGCACGACGGCGGAGTCGCACCACGCCAGCGTCATCCTGCC
GCCGGCCGCCTTCACGCGTCTACACGCCGCGCCGCACCTACAGCAGCACC
CCATCCGCCTCAACCTATCCGCTCTGCAGCATGCGCTGAGCGCGCTAGGC
GCGCTGGGCGCGCGCTCCGCCCCCGTCCACCTCACCTTCTCCGACGCTAC
GCTACGCGCGCGCACCGCCCAGCCCGGCTGCGTCGTGCGCGTCGCCCTGG
CTGCTCTTTGCGCCCCACCGTCGTCATCGCCGTCGAACTTGGCCACTTCG
TGGCGCGTGGCTGATGCAAACGCCCCCCCGTTGGCCGAGTTCATTCTAGG
CGCCGACGCGCTGCGCGACGCGTTGAACGACGTGCAGTGCGCTGGCGCGG
AGCTCGTGCGTATCGCCTTTGAGCCGCACGCGCCCTGTGTTCGTCTTGTA
GCGCCGGCGCACGCGCGTGGTGATATGGCGTGCGTCGCCGTCGAACTGTC
GCGTTGCACCCCGCGCTTTCAGCTGTTGCAGTGTCGACGCTCATGCGCTG
TTGTTGTTTCTACTCGCCTTTTGTTGCATACCGCCCCTGCGTTGCAGATC
GCCGATAGCGTCAAGCTTGCGCTTAGCGACCATGACGTGCTCACCGTCGT
GTGCAAGCTACGCGGCCTCACCGCCGAGCACCGCACTTTTGTCGAGTTTG
TGCTGCTCCCGCAAGAGCGCCACTCCCATCACGACGAACATCATACTCAC
GACGACGAGCGCCACCGCAACAGCGAAGAGCGCCACCGCTACGACGACGA
CCGTGACAACTACCAACACGAGCGCCACAGCTACCACCGCGAGAGCGACA
GCCGCGATGACGCGCCCCGCGACCACCACCACAATCACGCCCTCGCTGAG
GAATCCGACCCCGACCACCATTCGAGCTTCGTTTTCTAA
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Coding sequence (CDS) from alignment at tig00000159_pilon:547297..548385+

>Gchil10539.t1 ID=Gchil10539.t1|Name=Gchil10539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00000159_pilon:547297..548385+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCGGCGGGGGAGGAGGAAGGGGCGCAGACGGCGGCGCTTCGCTG
CGAGCTGGCGTCGCTCAAGCCACTGGCcgacgcgctgtcgtgcatggcgt
cgccgtcgcgcgcgcacgacgTACAGCTGTGGCACAGCGCCGCCGACGGG
CTGCGGCTGAGCACGACGGCGGAGTCGCACCACGCCAGCGTCATCCTGCC
GCCGGCCGCCTTCACGCGTCTACACGCCGCGCCGCACCTACAGCAGCACC
CCATCCGCCTCAACCTATCCGCTCTGCAGCATGCGCTGAGCGCGCTAGGC
GCGCTGGGCGCGCGCTCCGCCCCCGTCCACCTCACCTTCTCCGACGCTAC
GCTACGCGCGCGCACCGCCCAGCCCGGCTGCGTCGTGCGCGTCGCCCTGG
CTGCTCTTTGCGCCCCACCGTCGTCATCGCCGTCGAACTTGGCCACTTCG
TGGCGCGTGGCTGATGCAAACGCCCCCCCGTTGGCCGAGTTCATTCTAGG
CGCCGACGCGCTGCGCGACGCGTTGAACGACGTGCAGTGCGCTGGCGCGG
AGCTCGTGCGTATCGCCTTTGAGCCGCACGCGCCCTGTGTTCGTCTTGTA
GCGCCGGCGCACGCGCGTGGTGATATGGCGTGCGTCGCCGTCGAACTGTC
GCGTTGCACCCCGCGCTTTCAGCTGTTGCAGTGTCGACGCTCATGCGCTG
TTGTTGTTTCTACTCGCCTTTTGTTGCATACCGCCCCTGCGTTGCAGATC
GCCGATAGCGTCAAGCTTGCGCTTAGCGACCATGACGTGCTCACCGTCGT
GTGCAAGCTACGCGGCCTCACCGCCGAGCACCGCACTTTTGTCGAGTTTG
TGCTGCTCCCGCAAGAGCGCCACTCCCATCACGACGAACATCATACTCAC
GACGACGAGCGCCACCGCAACAGCGAAGAGCGCCACCGCTACGACGACGA
CCGTGACAACTACCAACACGAGCGCCACAGCTACCACCGCGAGAGCGACA
GCCGCGATGACGCGCCCCGCGACCACCACCACAATCACGCCCTCGCTGAG
GAATCCGACCCCGACCACCATTCGAGCTTCGTTTTCTAA
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