Gchil10538.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10538.t1
Unique NameGchil10538.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:546278..547016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10538Gchil10538Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 546278..547016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10538.t1Gchil10538.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 546278..547016 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10538.t1.stop1Gchil10538.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 546278..546280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10538.t1.CDS1Gchil10538.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 546278..546588 -
Gchil10538.t1.CDS2Gchil10538.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 546686..547016 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10538.t1.exon1Gchil10538.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 546278..546588 -
Gchil10538.t1.exon2Gchil10538.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 546686..547016 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10538.t1.intron1Gchil10538.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 546589..546685 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10538.t1.start1Gchil10538.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 547014..547016 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10538.t1 ID=Gchil10538.t1|Name=Gchil10538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=214bp
METCRACAHALPPFLSQPQPQPQPSSLLRAAFASSPPPSSPSSPSSPSSP
SSPSSPSHPPAPGLAAALCASPRPVAYTYRAAPSPPSCVSLAVAHAVRGA
AVGSVFGGAMALSTAVSSHYPRHLVLSHTAHAALRNAAGFASWTSVYAFS
RCTLLRARRRDDLLNPAVAGAFTGAVLTLVSLRGRWRPYQSQILTNAGAS
AMIALVFDSINRF*
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spliced messenger RNA

>Gchil10538.t1 ID=Gchil10538.t1|Name=Gchil10538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000159_pilon:546278..547016- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACGTGCCGTGCGTGCGCGCACGCCCTGCCGCCTTTCCTGTCGCA
GCCGCAGCCGCAGCCGCAGCCGTCGTCGCTGCTGCGCGCTGCTTTCGCGT
CGTCGCCGCCGCCGTCGTCCCCGTCGTCCCCGTCGTCCCCGTCGTCCCCG
TCGTCCCCGTCGTCCCCGTCGCACCCCCCGGCCCCGGGGCTGGCCGCCGC
GCTATGCGCTTCGCCGCGCCCCGTCGCCTACACCTACCGCGCTGCGCCGT
CGCCGCCATCCTGCGTCTCGCTGGCCGTCGCGCACGCCGTGCGCGGCGCC
GCCGTCGGCTCCGTCTTCGGCGGTGCCATGGCTCTTTCCACCGCTGTGTC
GAGCCACTACCCGCGCCATCTTGTGCTGTCGCACACAGCGCATGCTGCGC
TGCGCAACGCCGCCGGCTTCGCCTCCTGGACCTCGGTCTACGCCTTTTCG
CGCTGCACCTTGCTTCGCGCGCGCCGTCGCGATGATCTGCTCAACCCCGC
TGTGGCGGGCGCCTTCACGGGCGCTGTGCTTACCCTCGTGTCGCTTCGTG
GTCGCTGGCGCCCGTACCAGTCGCAAATCCTCACCAACGCCGGCGCCTCC
GCCATGATCGCCCTCGTCTTCGACTCCATTAACCGCTTTTAA
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protein sequence of Gchil10538.t1

>Gchil10538.t1 ID=Gchil10538.t1|Name=Gchil10538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=214bp
METCRACAHALPPFLSQPQPQPQPSSLLRAAFASSPPPSSPSSPSSPSSP
SSPSSPSHPPAPGLAAALCASPRPVAYTYRAAPSPPSCVSLAVAHAVRGA
AVGSVFGGAMALSTAVSSHYPRHLVLSHTAHAALRNAAGFASWTSVYAFS
RCTLLRARRRDDLLNPAVAGAFTGAVLTLVSLRGRWRPYQSQILTNAGAS
AMIALVFDSINRF*
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mRNA from alignment at tig00000159_pilon:546278..547016-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10538.t1 ID=Gchil10538.t1|Name=Gchil10538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=739bp|location=Sequence derived from alignment at tig00000159_pilon:546278..547016- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACGTGCCGTGCGTGCGCGCACGCCCTGCCGCCTTTCCTGTCGCA
GCCGCAGCCGCAGCCGCAGCCGTCGTCGCTGCTGCGCGCTGCTTTCGCGT
CGTCGCCGCCGCCGTCGTCCCCGTCGTCCCCGTCGTCCCCGTCGTCCCCG
TCGTCCCCGTCGTCCCCGTCGCACCCCCCGGCCCCGGGGCTGGCCGCCGC
GCTATGCGCTTCGCCGCGCCCCGTCGCCTACACCTACCGCGCTGCGCCGT
CGCCGCCATCCTGCGTCTCGCTGGCCGTCGCGCACGCCGTGCGCGGCGCC
GCCGTCGGCTCCGTCTTCGGCGGTGCCATGGGTACGTCACTTCCTCCTCC
CGCCATCCACTCGCGCGCTCAACACTCTCCCCCCCACGCCGTCCTACGAG
TGCTGACTGTACCTTGACGAGCGCGCAGCTCTTTCCACCGCTGTGTCGAG
CCACTACCCGCGCCATCTTGTGCTGTCGCACACAGCGCATGCTGCGCTGC
GCAACGCCGCCGGCTTCGCCTCCTGGACCTCGGTCTACGCCTTTTCGCGC
TGCACCTTGCTTCGCGCGCGCCGTCGCGATGATCTGCTCAACCCCGCTGT
GGCGGGCGCCTTCACGGGCGCTGTGCTTACCCTCGTGTCGCTTCGTGGTC
GCTGGCGCCCGTACCAGTCGCAAATCCTCACCAACGCCGGCGCCTCCGCC
ATGATCGCCCTCGTCTTCGACTCCATTAACCGCTTTTAA
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Coding sequence (CDS) from alignment at tig00000159_pilon:546278..547016-

>Gchil10538.t1 ID=Gchil10538.t1|Name=Gchil10538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000159_pilon:546278..547016- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACGTGCCGTGCGTGCGCGCACGCCCTGCCGCCTTTCCTGTCGCA
GCCGCAGCCGCAGCCGCAGCCGTCGTCGCTGCTGCGCGCTGCTTTCGCGT
CGTCGCCGCCGCCGTCGTCCCCGTCGTCCCCGTCGTCCCCGTCGTCCCCG
TCGTCCCCGTCGTCCCCGTCGCACCCCCCGGCCCCGGGGCTGGCCGCCGC
GCTATGCGCTTCGCCGCGCCCCGTCGCCTACACCTACCGCGCTGCGCCGT
CGCCGCCATCCTGCGTCTCGCTGGCCGTCGCGCACGCCGTGCGCGGCGCC
GCCGTCGGCTCCGTCTTCGGCGGTGCCATGGCTCTTTCCACCGCTGTGTC
GAGCCACTACCCGCGCCATCTTGTGCTGTCGCACACAGCGCATGCTGCGC
TGCGCAACGCCGCCGGCTTCGCCTCCTGGACCTCGGTCTACGCCTTTTCG
CGCTGCACCTTGCTTCGCGCGCGCCGTCGCGATGATCTGCTCAACCCCGC
TGTGGCGGGCGCCTTCACGGGCGCTGTGCTTACCCTCGTGTCGCTTCGTG
GTCGCTGGCGCCCGTACCAGTCGCAAATCCTCACCAACGCCGGCGCCTCC
GCCATGATCGCCCTCGTCTTCGACTCCATTAACCGCTTTTAA
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