Gchil10537.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10537.t1
Unique Name	Gchil10537.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	630

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000159_pilon	contig	tig00000159_pilon:544361..546250 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10537	Gchil10537	Gracilaria chilensis NLEC103_M9 male	gene	tig00000159_pilon 544361..546250 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10537.t1.start1	Gchil10537.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000159_pilon 544361..544363 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10537.t1.CDS1	Gchil10537.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000159_pilon 544361..546250 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10537.t1.exon1	Gchil10537.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000159_pilon 544361..546250 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10537.t1.stop1	Gchil10537.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000159_pilon 546248..546250 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10537.t1	Gchil10537.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000159_pilon 544361..546250 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000159_pilon:544361..546250+
coding sequence from alignment at tig00000159_pilon:544361..546250+

mRNA sequence

>Gchil10537.t1 ID=Gchil10537.t1|Name=Gchil10537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp
MADTDTIQTLADSPELVLPVYALVLTPLALYVYHDILDRRWRPVWRLSRY
LVAYIVLYIFSGSALVYYIIIQARYGHDFKEVGASALALILGTYGAWRLV
RLTRIIIAHHSLVKILQRIDRSLAAETGLQPVGMEYHLFRHPKTALPSRL
KYTHWRYETRHDFISSALFDDDYPGDTAARIRWLALFGKRVVVLQDDAEE
CASRVALWMRLVLRRPRSEPWRLLTSTSPLVQGQLYRPGLGEALRALITN
GSGKQAPPHANLNPAELLLNKLEKGGLTETAIGFFWIGSEMASEEMAQVL
AEMPPRWMRGVTQNGKQLMFELVMSLILCEMPEPEDTGVQWLLSLPILEW
RKDVANIKVWSALSEICADAVCSVLPEFYTQTKRLCDDDDEVYRIVRDGV
FALQEATSSAHGFQGDIVGLSLIELVRTSYRSGYVAEQILGKALEMELSR
QHVEDVDARIYKAEVATGLFSILQQLGQDDSDEFRDSFSSMKSSWGVDER
IEDVFFAIRERAKQEMRESFHYDEVAQSRCWYLSDRRSQCEDPVSAFGAG
YSTAMELAPLVVQMLRHYSEHKPEICVQKGHSNSERNNEQWMRWKQIQAY
DLSGSAEGLDADTARGASNGKGSVVVTLW*

spliced messenger RNA

>Gchil10537.t1 ID=Gchil10537.t1|Name=Gchil10537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000159_pilon:544361..546250+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACACGGACACCATACAAACGCTGGCGGATAGTCCCGAGCTCGT
GCTTCCGGTTTACGCGCTCGTCCTCACTCCTCTTGCCCTGTACGTTTACC
ACGACATTCTCGACAGAAGATGGCGCCCCGTATGGCGCCTATCCCGCTAC
CTCGTCGCCTACATTGTGCTGTACATCTTTTCCGGATCTGCCTTAGTATA
TTACATCATCATTCAAGCGCGCTACGGACACGACTTCAAAGAAGTGGGCG
CATCCGCTCTCGCCTTAATTCTTGGCACGTACGGTGCATGGCGTCTCGTA
CGTCTCACACGCATCATCATCGCTCACCATTCGCTCGTCAAAATACTACA
GCGCATCGACCGTTCTCTCGCCGCCGAGACCGGTTTACAACCAGTTGGGA
TGGAGTATCATCTCTTTAGACATCCGAAAACTGCGCTTCCGTCGAGACTA
AAGTACACGCATTGGCGCTATGAGACGCGCCATGATTTTATATCGTCGGC
CTTGTTCGATGATGACTACCCCGGCGACACAGCTGCGCGCATTCGCTGGC
TAGCCTTATTTGGAAAGCGAGTGGTGGTGCTGCAGGATGACGCAGAAGAG
TGCGCATCAAGGGTAGCGTTGTGGATGCGGCTTGTGCTCAGACGCCCCCG
CAGTGAACCATGGCGTTTGCTCACATCCACCAGCCCACTTGTGCAAGGCC
AGCTCTATCGCCCAGGTCTTGGAGAGGCTCTGCGGGCGCTCATCACGAAC
GGCAGCGGGAAGCAAGCTCCTCCGCACGCAAACCTCAACCCTGCCGAGTT
ATTGCTCAACAAACTGGAGAAGGGTGGCTTGACAGAGACAGCAATCGGCT
TCTTCTGGATCGGCTCTGAGATGGCGTCCGAAGAAATGGCCCAAGTGCTG
GCCGAAATGCCGCCAAGGTGGATGCGCGGCGTTACGCAGAACGGTAAGCA
GCTCATGTTCGAATTGGTCATGTCGTTGATTCTGTGCGAGATGCCCGAAC
CTGAGGATACAGGCGTGCAGTGGCTTTTGTCGCTGCCCATTCTGGAATGG
AGAAAAGATGTGGCGAATATCAAAGTGTGGAGCGCATTGTCGGAGATATG
TGCAGATGCGGTGTGCAGCGTGCTGCCAGAGTTTTACACACAGACCAAAC
GATTGTGTGATGATGATGACGAAGTATATAGAATTGTTCGCGATGGGGTT
TTTGCACTACAAGAGGCAACATCTAGTGCACATGGGTTTCAGGGCGATAT
CGTGGGGTTGAGCCTGATTGAGTTGGTACGGACGTCGTATCGGTCTGGGT
ATGTGGCCGAGCAGATCCTAGGGAAAGCGCTTGAGATGGAGTTGAGTCGG
CAACACGTTGAGGACGTAGATGCACGCATTTACAAAGCCGAGGTCGCAAC
AGGATTGTTCTCCATTCTGCAACAACTCGGACAGGATGATAGCGATGAAT
TCCGGGATAGCTTCAGCTCAATGAAGAGCAGTTGGGGCGTGGACGAAAGG
ATCGAGGACGTGTTCTTCGCTATTCGCGAAAGGGCAAAACAGGAGATGCG
CGAATCATTTCATTATGACGAGGTGGCGCAAAGCCGGTGTTGGTATCTGA
GCGATCGCAGGTCGCAATGCGAAGATCCGGTGTCTGCGTTTGGGGCGGGT
TACTCGACGGCGATGGAACTGGCGCCGCTAGTGGTACAAATGTTGCGACA
TTACTCTGAGCATAAGCCTGAGATCTGCGTGCAGAAGGGACATTCCAACT
CCGAGCGCAACAACGAACAGTGGATGCGATGGAAGCAGATACAGGCGTAC
GATCTGAGCGGGAGCGCGGAGGGGCTGGACGCAGACACGGCGAGAGGCGC
ATCAAATGGTAAAGGTAGTGTGGTTGTAACGTTGTGGTAA

protein sequence of Gchil10537.t1

>Gchil10537.t1 ID=Gchil10537.t1|Name=Gchil10537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=630bp
MADTDTIQTLADSPELVLPVYALVLTPLALYVYHDILDRRWRPVWRLSRY
LVAYIVLYIFSGSALVYYIIIQARYGHDFKEVGASALALILGTYGAWRLV
RLTRIIIAHHSLVKILQRIDRSLAAETGLQPVGMEYHLFRHPKTALPSRL
KYTHWRYETRHDFISSALFDDDYPGDTAARIRWLALFGKRVVVLQDDAEE
CASRVALWMRLVLRRPRSEPWRLLTSTSPLVQGQLYRPGLGEALRALITN
GSGKQAPPHANLNPAELLLNKLEKGGLTETAIGFFWIGSEMASEEMAQVL
AEMPPRWMRGVTQNGKQLMFELVMSLILCEMPEPEDTGVQWLLSLPILEW
RKDVANIKVWSALSEICADAVCSVLPEFYTQTKRLCDDDDEVYRIVRDGV
FALQEATSSAHGFQGDIVGLSLIELVRTSYRSGYVAEQILGKALEMELSR
QHVEDVDARIYKAEVATGLFSILQQLGQDDSDEFRDSFSSMKSSWGVDER
IEDVFFAIRERAKQEMRESFHYDEVAQSRCWYLSDRRSQCEDPVSAFGAG
YSTAMELAPLVVQMLRHYSEHKPEICVQKGHSNSERNNEQWMRWKQIQAY
DLSGSAEGLDADTARGASNGKGSVVVTLW*

mRNA from alignment at tig00000159_pilon:544361..546250+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10537.t1 ID=Gchil10537.t1|Name=Gchil10537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000159_pilon:544361..546250+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGACACGGACACCATACAAACGCTGGCGGATAGTCCCGAGCTCGT
GCTTCCGGTTTACGCGCTCGTCCTCACTCCTCTTGCCCTGTACGTTTACC
ACGACATTCTCGACAGAAGATGGCGCCCCGTATGGCGCCTATCCCGCTAC
CTCGTCGCCTACATTGTGCTGTACATCTTTTCCGGATCTGCCTTAGTATA
TTACATCATCATTCAAGCGCGCTACGGACACGACTTCAAAGAAGTGGGCG
CATCCGCTCTCGCCTTAATTCTTGGCACGTACGGTGCATGGCGTCTCGTA
CGTCTCACACGCATCATCATCGCTCACCATTCGCTCGTCAAAATACTACA
GCGCATCGACCGTTCTCTCGCCGCCGAGACCGGTTTACAACCAGTTGGGA
TGGAGTATCATCTCTTTAGACATCCGAAAACTGCGCTTCCGTCGAGACTA
AAGTACACGCATTGGCGCTATGAGACGCGCCATGATTTTATATCGTCGGC
CTTGTTCGATGATGACTACCCCGGCGACACAGCTGCGCGCATTCGCTGGC
TAGCCTTATTTGGAAAGCGAGTGGTGGTGCTGCAGGATGACGCAGAAGAG
TGCGCATCAAGGGTAGCGTTGTGGATGCGGCTTGTGCTCAGACGCCCCCG
CAGTGAACCATGGCGTTTGCTCACATCCACCAGCCCACTTGTGCAAGGCC
AGCTCTATCGCCCAGGTCTTGGAGAGGCTCTGCGGGCGCTCATCACGAAC
GGCAGCGGGAAGCAAGCTCCTCCGCACGCAAACCTCAACCCTGCCGAGTT
ATTGCTCAACAAACTGGAGAAGGGTGGCTTGACAGAGACAGCAATCGGCT
TCTTCTGGATCGGCTCTGAGATGGCGTCCGAAGAAATGGCCCAAGTGCTG
GCCGAAATGCCGCCAAGGTGGATGCGCGGCGTTACGCAGAACGGTAAGCA
GCTCATGTTCGAATTGGTCATGTCGTTGATTCTGTGCGAGATGCCCGAAC
CTGAGGATACAGGCGTGCAGTGGCTTTTGTCGCTGCCCATTCTGGAATGG
AGAAAAGATGTGGCGAATATCAAAGTGTGGAGCGCATTGTCGGAGATATG
TGCAGATGCGGTGTGCAGCGTGCTGCCAGAGTTTTACACACAGACCAAAC
GATTGTGTGATGATGATGACGAAGTATATAGAATTGTTCGCGATGGGGTT
TTTGCACTACAAGAGGCAACATCTAGTGCACATGGGTTTCAGGGCGATAT
CGTGGGGTTGAGCCTGATTGAGTTGGTACGGACGTCGTATCGGTCTGGGT
ATGTGGCCGAGCAGATCCTAGGGAAAGCGCTTGAGATGGAGTTGAGTCGG
CAACACGTTGAGGACGTAGATGCACGCATTTACAAAGCCGAGGTCGCAAC
AGGATTGTTCTCCATTCTGCAACAACTCGGACAGGATGATAGCGATGAAT
TCCGGGATAGCTTCAGCTCAATGAAGAGCAGTTGGGGCGTGGACGAAAGG
ATCGAGGACGTGTTCTTCGCTATTCGCGAAAGGGCAAAACAGGAGATGCG
CGAATCATTTCATTATGACGAGGTGGCGCAAAGCCGGTGTTGGTATCTGA
GCGATCGCAGGTCGCAATGCGAAGATCCGGTGTCTGCGTTTGGGGCGGGT
TACTCGACGGCGATGGAACTGGCGCCGCTAGTGGTACAAATGTTGCGACA
TTACTCTGAGCATAAGCCTGAGATCTGCGTGCAGAAGGGACATTCCAACT
CCGAGCGCAACAACGAACAGTGGATGCGATGGAAGCAGATACAGGCGTAC
GATCTGAGCGGGAGCGCGGAGGGGCTGGACGCAGACACGGCGAGAGGCGC
ATCAAATGGTAAAGGTAGTGTGGTTGTAACGTTGTGGTAA

Coding sequence (CDS) from alignment at tig00000159_pilon:544361..546250+

>Gchil10537.t1 ID=Gchil10537.t1|Name=Gchil10537.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00000159_pilon:544361..546250+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGACACGGACACCATACAAACGCTGGCGGATAGTCCCGAGCTCGT
GCTTCCGGTTTACGCGCTCGTCCTCACTCCTCTTGCCCTGTACGTTTACC
ACGACATTCTCGACAGAAGATGGCGCCCCGTATGGCGCCTATCCCGCTAC
CTCGTCGCCTACATTGTGCTGTACATCTTTTCCGGATCTGCCTTAGTATA
TTACATCATCATTCAAGCGCGCTACGGACACGACTTCAAAGAAGTGGGCG
CATCCGCTCTCGCCTTAATTCTTGGCACGTACGGTGCATGGCGTCTCGTA
CGTCTCACACGCATCATCATCGCTCACCATTCGCTCGTCAAAATACTACA
GCGCATCGACCGTTCTCTCGCCGCCGAGACCGGTTTACAACCAGTTGGGA
TGGAGTATCATCTCTTTAGACATCCGAAAACTGCGCTTCCGTCGAGACTA
AAGTACACGCATTGGCGCTATGAGACGCGCCATGATTTTATATCGTCGGC
CTTGTTCGATGATGACTACCCCGGCGACACAGCTGCGCGCATTCGCTGGC
TAGCCTTATTTGGAAAGCGAGTGGTGGTGCTGCAGGATGACGCAGAAGAG
TGCGCATCAAGGGTAGCGTTGTGGATGCGGCTTGTGCTCAGACGCCCCCG
CAGTGAACCATGGCGTTTGCTCACATCCACCAGCCCACTTGTGCAAGGCC
AGCTCTATCGCCCAGGTCTTGGAGAGGCTCTGCGGGCGCTCATCACGAAC
GGCAGCGGGAAGCAAGCTCCTCCGCACGCAAACCTCAACCCTGCCGAGTT
ATTGCTCAACAAACTGGAGAAGGGTGGCTTGACAGAGACAGCAATCGGCT
TCTTCTGGATCGGCTCTGAGATGGCGTCCGAAGAAATGGCCCAAGTGCTG
GCCGAAATGCCGCCAAGGTGGATGCGCGGCGTTACGCAGAACGGTAAGCA
GCTCATGTTCGAATTGGTCATGTCGTTGATTCTGTGCGAGATGCCCGAAC
CTGAGGATACAGGCGTGCAGTGGCTTTTGTCGCTGCCCATTCTGGAATGG
AGAAAAGATGTGGCGAATATCAAAGTGTGGAGCGCATTGTCGGAGATATG
TGCAGATGCGGTGTGCAGCGTGCTGCCAGAGTTTTACACACAGACCAAAC
GATTGTGTGATGATGATGACGAAGTATATAGAATTGTTCGCGATGGGGTT
TTTGCACTACAAGAGGCAACATCTAGTGCACATGGGTTTCAGGGCGATAT
CGTGGGGTTGAGCCTGATTGAGTTGGTACGGACGTCGTATCGGTCTGGGT
ATGTGGCCGAGCAGATCCTAGGGAAAGCGCTTGAGATGGAGTTGAGTCGG
CAACACGTTGAGGACGTAGATGCACGCATTTACAAAGCCGAGGTCGCAAC
AGGATTGTTCTCCATTCTGCAACAACTCGGACAGGATGATAGCGATGAAT
TCCGGGATAGCTTCAGCTCAATGAAGAGCAGTTGGGGCGTGGACGAAAGG
ATCGAGGACGTGTTCTTCGCTATTCGCGAAAGGGCAAAACAGGAGATGCG
CGAATCATTTCATTATGACGAGGTGGCGCAAAGCCGGTGTTGGTATCTGA
GCGATCGCAGGTCGCAATGCGAAGATCCGGTGTCTGCGTTTGGGGCGGGT
TACTCGACGGCGATGGAACTGGCGCCGCTAGTGGTACAAATGTTGCGACA
TTACTCTGAGCATAAGCCTGAGATCTGCGTGCAGAAGGGACATTCCAACT
CCGAGCGCAACAACGAACAGTGGATGCGATGGAAGCAGATACAGGCGTAC
GATCTGAGCGGGAGCGCGGAGGGGCTGGACGCAGACACGGCGAGAGGCGC
ATCAAATGGTAAAGGTAGTGTGGTTGTAACGTTGTGGTAA