Gchil10535.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10535.t1
Unique NameGchil10535.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:480817..482800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO96071
Preferred nameDHFR-TS
PFAMsDHFR_1,Thymidylat_synt
Max annot lvl3041|Chlorophyta
KEGG rclassRC00109,RC00110,RC00158,RC00219,RC00332
KEGG koko:K13998
KEGG ReactionR00936,R00937,R00939,R00940,R02101,R02235,R02236
KEGG Pathwayko00240,ko00670,ko00790,ko01100,map00240,map00670,map00790,map01100
KEGG ModuleM00053,M00126,M00841
Evalue1.84e-134
EggNOG OGsCOG0207@1|root,COG0262@1|root,KOG0673@2759|Eukaryota,KOG1324@2759|Eukaryota,37IFR@33090|Viridiplantae,34H5S@3041|Chlorophyta
EC1.5.1.3,2.1.1.45
DescriptionBifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10535Gchil10535Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 480817..482800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10535.t1Gchil10535.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 480817..482800 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10535.t1.start1Gchil10535.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 480817..480819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10535.t1.CDS1Gchil10535.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 480817..481989 +
Gchil10535.t1.CDS2Gchil10535.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 482732..482800 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10535.t1.exon1Gchil10535.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 480817..481989 +
Gchil10535.t1.exon2Gchil10535.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 482732..482800 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10535.t1.intron1Gchil10535.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 481990..482731 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10535.t1.stop1Gchil10535.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 482798..482800 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10535.t1 ID=Gchil10535.t1|Name=Gchil10535.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp
MVTQHVFEGRLVVALCKENNGIGYEGKLPWPHLSKDMLFFKNLTMDSAVL
MGSVTYFSIPEKFRPLPGRLNIVLSSRTRDELECPDSVLIAGSMDAAASL
LKSRNVKLVFVIGGEATYREALRNPQWSSRVYLTEIRTPHAADRFFPEDM
ESENSQFVPVSISAEIEEKGIRYHMKEYVRRSLIKQNEPPLRTPEVHEEN
QYLNLVRKILSEGVKKTDRTDTGTLSVFGARMKFNLRQSFPLLTTKRVFW
RGVAEELFWFIKGGTNANELSEKGIHIWDGNGSREFLDSRGLIEREVGDL
GPVYGFQWRHFGAEYTHMHAKYDEKGIDQLKNVIETIMKNPNDRRILLSA
WNPAAIDQMALPPCHMMAQFYVANGELSCQMYQRSCDMGLGRSESPLPDL
QSLLQNAEDKILA*
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spliced messenger RNA

>Gchil10535.t1 ID=Gchil10535.t1|Name=Gchil10535.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000159_pilon:480817..482800+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACCCAGCATGTTTTCGAGGGACGCTTGGTGGTCGCCCTGTGCAA
GGAGAACAATGGTATCGGATATGAAGGAAAACTTCCCTGGCCCCATCTCT
CCAAGGATATGCTCTTCTTTAAGAATCTAACAATGGATTCAGCTGTCCTC
ATGGGTTCTGTCACATATTTCTCAATTCCAGAGAAGTTCAGGCCTCTGCC
TGGGCGTTTAAATATTGTGCTCTCTTCAAGGACTCGAGATGAGCTCGAAT
GTCCTGATTCGGTTCTCATTGCTGGTTCTATGGACGCAGCAGCGTCTTTG
CTCAAGTCTCGAAATGTCAAACTTGTTTTCGTGATTGGAGGTGAAGCTAC
CTACAGAGAAGCGTTGCGAAACCCACAATGGTCTTCCCGGGTTTACTTGA
CGGAAATTCGTACGCCACATGCAGCAGACAGATTTTTTCCAGAAGATATG
GAATCGGAAAATTCACAGTTCGTACCTGTATCCATTTCGGCCGAGATTGA
GGAGAAAGGGATTAGGTACCATATGAAAGAGTATGTTCGCCGTTCCCTGA
TCAAGCAGAATGAGCCTCCTCTAAGGACACCGGAGGTACATGAAGAAAAC
CAGTACTTGAATCTCGTGCGAAAGATTTTAAGTGAAGGCGTCAAAAAGAC
TGACAGGACGGATACCGGGACCCTTTCTGTGTTTGGAGCGCGGATGAAGT
TCAATCTCCGCCAATCTTTCCCACTACTGACGACGAAGAGAGTCTTTTGG
CGCGGTGTAGCTGAAGAGTTATTCTGGTTTATAAAGGGAGGCACTAACGC
GAACGAGCTTTCCGAAAAAGGGATTCATATTTGGGACGGAAACGGATCAA
GGGAATTCTTGGATTCACGTGGACTGATTGAGCGTGAAGTTGGAGACTTG
GGTCCTGTTTACGGTTTCCAGTGGCGACACTTCGGTGCTGAATACACCCA
TATGCACGCGAAATATGATGAGAAAGGTATAGATCAATTAAAGAATGTTA
TTGAAACCATCATGAAGAACCCCAACGATCGTCGAATTCTTCTCTCCGCA
TGGAACCCTGCTGCGATAGATCAGATGGCGCTTCCACCGTGTCACATGAT
GGCACAGTTCTACGTTGCAAATGGGGAGCTTTCATGCCAGATGTATCAAC
GTTCCTGCGATATGGGCCTCGGCCGTTCAGAGAGCCCTCTGCCGGATTTA
CAAAGCCTGTTGCAGAATGCCGAGGACAAAATCTTGGCCTGA
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protein sequence of Gchil10535.t1

>Gchil10535.t1 ID=Gchil10535.t1|Name=Gchil10535.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=414bp
MVTQHVFEGRLVVALCKENNGIGYEGKLPWPHLSKDMLFFKNLTMDSAVL
MGSVTYFSIPEKFRPLPGRLNIVLSSRTRDELECPDSVLIAGSMDAAASL
LKSRNVKLVFVIGGEATYREALRNPQWSSRVYLTEIRTPHAADRFFPEDM
ESENSQFVPVSISAEIEEKGIRYHMKEYVRRSLIKQNEPPLRTPEVHEEN
QYLNLVRKILSEGVKKTDRTDTGTLSVFGARMKFNLRQSFPLLTTKRVFW
RGVAEELFWFIKGGTNANELSEKGIHIWDGNGSREFLDSRGLIEREVGDL
GPVYGFQWRHFGAEYTHMHAKYDEKGIDQLKNVIETIMKNPNDRRILLSA
WNPAAIDQMALPPCHMMAQFYVANGELSCQMYQRSCDMGLGRSESPLPDL
QSLLQNAEDKILA*
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mRNA from alignment at tig00000159_pilon:480817..482800+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10535.t1 ID=Gchil10535.t1|Name=Gchil10535.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1984bp|location=Sequence derived from alignment at tig00000159_pilon:480817..482800+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTACCCAGCATGTTTTCGAGGGACGCTTGGTGGTCGCCCTGTGCAA
GGAGAACAATGGTATCGGATATGAAGGAAAACTTCCCTGGCCCCATCTCT
CCAAGGATATGCTCTTCTTTAAGAATCTAACAATGGATTCAGCTGTCCTC
ATGGGTTCTGTCACATATTTCTCAATTCCAGAGAAGTTCAGGCCTCTGCC
TGGGCGTTTAAATATTGTGCTCTCTTCAAGGACTCGAGATGAGCTCGAAT
GTCCTGATTCGGTTCTCATTGCTGGTTCTATGGACGCAGCAGCGTCTTTG
CTCAAGTCTCGAAATGTCAAACTTGTTTTCGTGATTGGAGGTGAAGCTAC
CTACAGAGAAGCGTTGCGAAACCCACAATGGTCTTCCCGGGTTTACTTGA
CGGAAATTCGTACGCCACATGCAGCAGACAGATTTTTTCCAGAAGATATG
GAATCGGAAAATTCACAGTTCGTACCTGTATCCATTTCGGCCGAGATTGA
GGAGAAAGGGATTAGGTACCATATGAAAGAGTATGTTCGCCGTTCCCTGA
TCAAGCAGAATGAGCCTCCTCTAAGGACACCGGAGGTACATGAAGAAAAC
CAGTACTTGAATCTCGTGCGAAAGATTTTAAGTGAAGGCGTCAAAAAGAC
TGACAGGACGGATACCGGGACCCTTTCTGTGTTTGGAGCGCGGATGAAGT
TCAATCTCCGCCAATCTTTCCCACTACTGACGACGAAGAGAGTCTTTTGG
CGCGGTGTAGCTGAAGAGTTATTCTGGTTTATAAAGGGAGGCACTAACGC
GAACGAGCTTTCCGAAAAAGGGATTCATATTTGGGACGGAAACGGATCAA
GGGAATTCTTGGATTCACGTGGACTGATTGAGCGTGAAGTTGGAGACTTG
GGTCCTGTTTACGGTTTCCAGTGGCGACACTTCGGTGCTGAATACACCCA
TATGCACGCGAAATATGATGAGAAAGGTATAGATCAATTAAAGAATGTTA
TTGAAACCATCATGAAGAACCCCAACGATCGTCGAATTCTTCTCTCCGCA
TGGAACCCTGCTGCGATAGATCAGATGGCGCTTCCACCGTGTCACATGAT
GGCACAGTTCTACGTTGCAAATGGGGAGCTTTCATGCCAGATGTATCAAC
GTTCCTGCGATATGGGCCTCGGCGTACCTTTCAACATTGCATCATATTCG
TTGTTAACTTGTCTTATAGCTAAGGTAACCGGGCTCACACCTGGTGACTT
TATCCATGTTTTGGGTGATGCACATGTTTACCTGAATCACGTTGAAGCTC
TTCGGAAGCAGctggaacgaacagcaagacccttcccaacccttgcaatc
cgacaccgaggaaaaattgaagatttccgttttgaggatttgacccttga
aaattatacaccatacaagtcactggcgatgaaaatggccgtgtgacgtt
ctgataagattccgcttgaaatcctgaggattcacgtgtgacttttcttc
ccctcatctaaagactttgaaagctcgttagctttctccttcgattcccc
gggtaacgatacttcttgtttctctgctcctggtctctgcagctgtagta
gccggcgatcgaattccctttttgtttcgtccaccagacaacgcaaagcg
tgcatttctgcagaggcagtttccatgcggtcgcgcaacctctccttcgc
tgctaaaaactgtgcaagttgtcgagagttctgttcgaagaaagtatctt
tctgctctccactcatgttcgaggctcttaaaACGGATCAAGTTTCAAAG
ATAAACTTGTACCAGTAAAACCTTGAAGTTGTGCTTAGATGTGATTAAGG
ATCGAGTTAAGAGGGTCCGAAGATGATCAGTGCAGAACAAGAAGTTATTC
GACTTTTTCCTCCAGCGTTCAGAGAGCCCTCTGCCGGATTTACAAAGCCT
GTTGCAGAATGCCGAGGACAAAATCTTGGCCTGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:480817..482800+

>Gchil10535.t1 ID=Gchil10535.t1|Name=Gchil10535.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000159_pilon:480817..482800+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTACCCAGCATGTTTTCGAGGGACGCTTGGTGGTCGCCCTGTGCAA
GGAGAACAATGGTATCGGATATGAAGGAAAACTTCCCTGGCCCCATCTCT
CCAAGGATATGCTCTTCTTTAAGAATCTAACAATGGATTCAGCTGTCCTC
ATGGGTTCTGTCACATATTTCTCAATTCCAGAGAAGTTCAGGCCTCTGCC
TGGGCGTTTAAATATTGTGCTCTCTTCAAGGACTCGAGATGAGCTCGAAT
GTCCTGATTCGGTTCTCATTGCTGGTTCTATGGACGCAGCAGCGTCTTTG
CTCAAGTCTCGAAATGTCAAACTTGTTTTCGTGATTGGAGGTGAAGCTAC
CTACAGAGAAGCGTTGCGAAACCCACAATGGTCTTCCCGGGTTTACTTGA
CGGAAATTCGTACGCCACATGCAGCAGACAGATTTTTTCCAGAAGATATG
GAATCGGAAAATTCACAGTTCGTACCTGTATCCATTTCGGCCGAGATTGA
GGAGAAAGGGATTAGGTACCATATGAAAGAGTATGTTCGCCGTTCCCTGA
TCAAGCAGAATGAGCCTCCTCTAAGGACACCGGAGGTACATGAAGAAAAC
CAGTACTTGAATCTCGTGCGAAAGATTTTAAGTGAAGGCGTCAAAAAGAC
TGACAGGACGGATACCGGGACCCTTTCTGTGTTTGGAGCGCGGATGAAGT
TCAATCTCCGCCAATCTTTCCCACTACTGACGACGAAGAGAGTCTTTTGG
CGCGGTGTAGCTGAAGAGTTATTCTGGTTTATAAAGGGAGGCACTAACGC
GAACGAGCTTTCCGAAAAAGGGATTCATATTTGGGACGGAAACGGATCAA
GGGAATTCTTGGATTCACGTGGACTGATTGAGCGTGAAGTTGGAGACTTG
GGTCCTGTTTACGGTTTCCAGTGGCGACACTTCGGTGCTGAATACACCCA
TATGCACGCGAAATATGATGAGAAAGGTATAGATCAATTAAAGAATGTTA
TTGAAACCATCATGAAGAACCCCAACGATCGTCGAATTCTTCTCTCCGCA
TGGAACCCTGCTGCGATAGATCAGATGGCGCTTCCACCGTGTCACATGAT
GGCACAGTTCTACGTTGCAAATGGGGAGCTTTCATGCCAGATGTATCAAC
GTTCCTGCGATATGGGCCTCGGCCGTTCAGAGAGCCCTCTGCCGGATTTA
CAAAGCCTGTTGCAGAATGCCGAGGACAAAATCTTGGCCTGA
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