Gchil10534.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10534.t1
Unique NameGchil10534.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:465438..466804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10534Gchil10534Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 465438..466804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10534.t1Gchil10534.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 465438..466804 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10534.t1.stop1Gchil10534.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 465438..465440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10534.t1.CDS1Gchil10534.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 465438..465501 -
Gchil10534.t1.CDS2Gchil10534.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 465597..466804 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10534.t1.exon1Gchil10534.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 465438..465501 -
Gchil10534.t1.exon2Gchil10534.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 465597..466804 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10534.t1.intron1Gchil10534.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 465502..465596 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10534.t1.start1Gchil10534.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 466802..466804 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10534.t1 ID=Gchil10534.t1|Name=Gchil10534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=424bp
MDEAHTRLTKLINQRLHRFISTVVLTGDWNLDPWMACTNGEGYSYIETLY
EVDVDEWCGLRDVRNAALCFRRPLLRADFRFLHKRDIPYWDYPRWERRTR
SRLGYLVPYKMIEIDRFRRNARVGRYVALPEQWAEIESPGACPVELSPAI
TYIGSALINDPFSGYWTVGFSDFIAKMAAYILWGTYHTYRVWYMSPTARR
YARQLNLSLVLGFRAKYDEFLLLVDLIDSTDWHGIPLEQSARGTRVRHQD
HLPGRTANAGDFVLYNPWTGQIITFDQARELLANPRESPQNQRTGYVFES
TPSDFADQEYEEASGADAELDFEDEPELSGTAPMTAASPPKAMASGLNPS
VGYHHGFALQPSDEEDPFLARLRQFLLHAGFPEEQMQGDRADLTGMLNNH
TRGTFSSFSRVFSSSSSSEGKGN*
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spliced messenger RNA

>Gchil10534.t1 ID=Gchil10534.t1|Name=Gchil10534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000159_pilon:465438..466804- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAAGCCCACACTCGGCTCACCAAGCTGATAAACCAGCGTCTGCA
CCGGTTTATTAGCACTGTCGTTCTCACTGGAGATTGGAATTTGGATCCTT
GGATGGCTTGCACGAATGGTGAAGGATACTCGTACATCGAAACGTTATAC
GAAGTCGACGTCGACGAATGGTGCGGCTTACGCGATGTACGCAACGCGGC
ACTCTGCTTTCGCCGGCCCTTGCTCCGTGCGGACTTCCGCTTCCTCCATA
AGAGAGACATTCCATACTGGGATTATCCTCGTTGGGAACGACGTACGAGA
TCCCGTTTGGGATACCTGGTCCCATACAAAATGATCGAGATTGATCGATT
TAGGCGGAATGCTCGCGTGGGACGGTATGTCGCGCTGCCAGAACAATGGG
CGGAGATCGAGAGCCCTGGTGCATGTCCGGTGGAGCTTTCTCCTGCCATA
ACCTATATCGGTTCCGCGTTGATCAACGACCCGTTCTCGGGATACTGGAC
GGTCGGGTTCTCCGATTTCATTGCCAAGATGGCAGCGTATATCCTCTGGG
GAACATACCATACCTATCGGGTTTGGTACATGTCGCCAACAGCGCGGAGA
TATGCGAGACAACTCAATCTTTCCCTTGTGTTGGGGTTCCGTGCCAAATA
TGACGAATTCCTACTCTTGGTAGACTTGATCGACAGTACCGACTGGCATG
GGATTCCATTGGAGCAATCAGCTAGAGGCACAAGGGTGCGCCATCAAGAT
CATTTGCCGGGACGCACAGCTAATGCTGGAGACTTTGTATTGTACAATCC
CTGGACAGGCCAGATAATCACGTTTGATCAGGCTCGTGAACTTCTTGCGA
ATCCTAGGGAGAGCCCTCAAAATCAGCGTACAGGATATGTGTTCGAGTCC
ACACCTTCTGATTTTGCAGATCAGGAGTATGAAGAAGCTTCCGGTGCTGA
TGCTGAACTAGATTTCGAGGATGAACCCGAACTATCCGGTACTGCGCCTA
TGACAGCTGCTTCGCCACCAAAGGCTATGGCATCGGGGCTCAACCCGTCG
GTGGGGTACCATCATGGGTTCGCCCTACAACCGAGCGATGAGGAGGATCC
CTTTTTGGCACGGTTGAGACAATTCCTCTTACACGCGGGCTTCCCCGAAG
AACAGATGCAAGGAGATCGTGCTGATCTTACCGGCATGCTGAATAACCAT
ACACGCGGTACTTTTTCTTCTTTTTCTCGAGTCTTCTCGTCTTCTTCTTC
TTCTGAGGGGAAAGGGAATTAG
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protein sequence of Gchil10534.t1

>Gchil10534.t1 ID=Gchil10534.t1|Name=Gchil10534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=424bp
MDEAHTRLTKLINQRLHRFISTVVLTGDWNLDPWMACTNGEGYSYIETLY
EVDVDEWCGLRDVRNAALCFRRPLLRADFRFLHKRDIPYWDYPRWERRTR
SRLGYLVPYKMIEIDRFRRNARVGRYVALPEQWAEIESPGACPVELSPAI
TYIGSALINDPFSGYWTVGFSDFIAKMAAYILWGTYHTYRVWYMSPTARR
YARQLNLSLVLGFRAKYDEFLLLVDLIDSTDWHGIPLEQSARGTRVRHQD
HLPGRTANAGDFVLYNPWTGQIITFDQARELLANPRESPQNQRTGYVFES
TPSDFADQEYEEASGADAELDFEDEPELSGTAPMTAASPPKAMASGLNPS
VGYHHGFALQPSDEEDPFLARLRQFLLHAGFPEEQMQGDRADLTGMLNNH
TRGTFSSFSRVFSSSSSSEGKGN*
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mRNA from alignment at tig00000159_pilon:465438..466804-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10534.t1 ID=Gchil10534.t1|Name=Gchil10534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1367bp|location=Sequence derived from alignment at tig00000159_pilon:465438..466804- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAAGCCCACACTCGGCTCACCAAGCTGATAAACCAGCGTCTGCA
CCGGTTTATTAGCACTGTCGTTCTCACTGGAGATTGGAATTTGGATCCTT
GGATGGCTTGCACGAATGGTGAAGGATACTCGTACATCGAAACGTTATAC
GAAGTCGACGTCGACGAATGGTGCGGCTTACGCGATGTACGCAACGCGGC
ACTCTGCTTTCGCCGGCCCTTGCTCCGTGCGGACTTCCGCTTCCTCCATA
AGAGAGACATTCCATACTGGGATTATCCTCGTTGGGAACGACGTACGAGA
TCCCGTTTGGGATACCTGGTCCCATACAAAATGATCGAGATTGATCGATT
TAGGCGGAATGCTCGCGTGGGACGGTATGTCGCGCTGCCAGAACAATGGG
CGGAGATCGAGAGCCCTGGTGCATGTCCGGTGGAGCTTTCTCCTGCCATA
ACCTATATCGGTTCCGCGTTGATCAACGACCCGTTCTCGGGATACTGGAC
GGTCGGGTTCTCCGATTTCATTGCCAAGATGGCAGCGTATATCCTCTGGG
GAACATACCATACCTATCGGGTTTGGTACATGTCGCCAACAGCGCGGAGA
TATGCGAGACAACTCAATCTTTCCCTTGTGTTGGGGTTCCGTGCCAAATA
TGACGAATTCCTACTCTTGGTAGACTTGATCGACAGTACCGACTGGCATG
GGATTCCATTGGAGCAATCAGCTAGAGGCACAAGGGTGCGCCATCAAGAT
CATTTGCCGGGACGCACAGCTAATGCTGGAGACTTTGTATTGTACAATCC
CTGGACAGGCCAGATAATCACGTTTGATCAGGCTCGTGAACTTCTTGCGA
ATCCTAGGGAGAGCCCTCAAAATCAGCGTACAGGATATGTGTTCGAGTCC
ACACCTTCTGATTTTGCAGATCAGGAGTATGAAGAAGCTTCCGGTGCTGA
TGCTGAACTAGATTTCGAGGATGAACCCGAACTATCCGGTACTGCGCCTA
TGACAGCTGCTTCGCCACCAAAGGCTATGGCATCGGGGCTCAACCCGTCG
GTGGGGTACCATCATGGGTTCGCCCTACAACCGAGCGATGAGGAGGATCC
CTTTTTGGCACGGTTGAGACAATTCCTCTTACACGCGGGCTTCCCCGAAG
AACAGATGCAAGGAGATCGTGCTGATCTTACCGGCATGCTGAATAACCAT
ACACGCGGGTAAGTATCGTGACCGAATTTAGATGTCGTCAACACCCTTGA
GGCGATAAGATAAACCGAATTCTTCTATTTCCATGACTTCACGTGTTCCT
AAGTACTTTTTCTTCTTTTTCTCGAGTCTTCTCGTCTTCTTCTTCTTCTG
AGGGGAAAGGGAATTAG
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Coding sequence (CDS) from alignment at tig00000159_pilon:465438..466804-

>Gchil10534.t1 ID=Gchil10534.t1|Name=Gchil10534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00000159_pilon:465438..466804- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAAGCCCACACTCGGCTCACCAAGCTGATAAACCAGCGTCTGCA
CCGGTTTATTAGCACTGTCGTTCTCACTGGAGATTGGAATTTGGATCCTT
GGATGGCTTGCACGAATGGTGAAGGATACTCGTACATCGAAACGTTATAC
GAAGTCGACGTCGACGAATGGTGCGGCTTACGCGATGTACGCAACGCGGC
ACTCTGCTTTCGCCGGCCCTTGCTCCGTGCGGACTTCCGCTTCCTCCATA
AGAGAGACATTCCATACTGGGATTATCCTCGTTGGGAACGACGTACGAGA
TCCCGTTTGGGATACCTGGTCCCATACAAAATGATCGAGATTGATCGATT
TAGGCGGAATGCTCGCGTGGGACGGTATGTCGCGCTGCCAGAACAATGGG
CGGAGATCGAGAGCCCTGGTGCATGTCCGGTGGAGCTTTCTCCTGCCATA
ACCTATATCGGTTCCGCGTTGATCAACGACCCGTTCTCGGGATACTGGAC
GGTCGGGTTCTCCGATTTCATTGCCAAGATGGCAGCGTATATCCTCTGGG
GAACATACCATACCTATCGGGTTTGGTACATGTCGCCAACAGCGCGGAGA
TATGCGAGACAACTCAATCTTTCCCTTGTGTTGGGGTTCCGTGCCAAATA
TGACGAATTCCTACTCTTGGTAGACTTGATCGACAGTACCGACTGGCATG
GGATTCCATTGGAGCAATCAGCTAGAGGCACAAGGGTGCGCCATCAAGAT
CATTTGCCGGGACGCACAGCTAATGCTGGAGACTTTGTATTGTACAATCC
CTGGACAGGCCAGATAATCACGTTTGATCAGGCTCGTGAACTTCTTGCGA
ATCCTAGGGAGAGCCCTCAAAATCAGCGTACAGGATATGTGTTCGAGTCC
ACACCTTCTGATTTTGCAGATCAGGAGTATGAAGAAGCTTCCGGTGCTGA
TGCTGAACTAGATTTCGAGGATGAACCCGAACTATCCGGTACTGCGCCTA
TGACAGCTGCTTCGCCACCAAAGGCTATGGCATCGGGGCTCAACCCGTCG
GTGGGGTACCATCATGGGTTCGCCCTACAACCGAGCGATGAGGAGGATCC
CTTTTTGGCACGGTTGAGACAATTCCTCTTACACGCGGGCTTCCCCGAAG
AACAGATGCAAGGAGATCGTGCTGATCTTACCGGCATGCTGAATAACCAT
ACACGCGGTACTTTTTCTTCTTTTTCTCGAGTCTTCTCGTCTTCTTCTTC
TTCTGAGGGGAAAGGGAATTAG
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