Gchil10533.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10533.t1
Unique NameGchil10533.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:463095..464479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000685
PFAMsrve
Max annot lvl33208|Metazoa
Evalue2.77e-22
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3ADCI@33154|Opisthokonta,3CNH4@33208|Metazoa,3E4MW@33213|Bilateria
DescriptionIntegrase core domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10533Gchil10533Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 463095..464479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10533.t1Gchil10533.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 463095..464479 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10533.t1.start1Gchil10533.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 463095..463097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10533.t1.CDS1Gchil10533.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 463095..463826 +
Gchil10533.t1.CDS2Gchil10533.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 463901..464479 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10533.t1.exon1Gchil10533.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 463095..463826 +
Gchil10533.t1.exon2Gchil10533.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 463901..464479 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10533.t1.intron1Gchil10533.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 463827..463900 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10533.t1.stop1Gchil10533.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 464477..464479 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10533.t1 ID=Gchil10533.t1|Name=Gchil10533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=437bp
MEMDNDETKLEDQEDQGDYSQLDPLRATHGTEHPDQLDRILITDLLNEQL
TDNFCTAIRSRLNGGEDLPFSLDSRGILLRHVEKHDQIVVPHALKSRVLY
LAHYAKLSGNPGGTKMFMTLRRDFYCPTLAMDCHATVKLCRTCAIDRVKL
YKKRKKMTLFPAKAPLQFVSIDILGELIRSNQGYRYLLLITDRFSKLLRT
VPLKRITALVKAQAFIKHWVYVYGPPEVLLSDNGKQFGAMFFQNVERYNP
TLLAALRHYIADHPKEWDMYTDTLCYTYNAQVHTSTKAAPFDLVISRNLP
SLRMRLDEVKEDKPTPEQNHLRWRIDLRLRTEQAGPELAKTQARYKRNSN
DRRRRQLSDLRVGRYSFLRVARLEKQDGPRHKLLPVESRPFKVMELTNNT
VVLKTGEDVERFSRDRVETAPDNPETQETEKESTVH*
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spliced messenger RNA

>Gchil10533.t1 ID=Gchil10533.t1|Name=Gchil10533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000159_pilon:463095..464479+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggagatggacaacgatgaaacgaaacttgaagatcaagaagatcaagg
ggattactcccaattggaccctttaagggcaacccatggaactgaacatc
ctgatcaactcgaccgtatcttgatcactgatctcctcaatgagcaactc
acagataacttctgtacagcaatacgctctcgtcttaacgggggggagga
tctgcccttttcgctcgattcacgaggtatattgctcagacatgtcgaga
agcatgatcagatcgtggttccgcacgctttgaagagtcgtgtactctac
ttggcccattatgcgaagctatctggaaacccaggaggaacaaagatgtt
tatgacactaaggagggacttctattgtccaacgttggcaatggactgcc
atgctacggtaaagctatgccgaacgtgtgcgattgatcgcgtgaaacta
tataagaagaggaaaaagatgactctattcccggcgaaggcgcctctaca
attcgtcagcatcgacatacttggagagctaattcgttccaatcaaggat
atcgctacctactgctaattacggatcgattctcgaagcttttacggacc
gtaccgttgaagaggataaccgccttggtaaaagctcaggctttcataaa
acactgggtgtatgtgtacggaccgccggaagttctgctatcagataatg
gaaaacagtttggcgctatgttctttcagaacgtcgaacgctacaaccct
acgttattagccgctcttcggcattacattgcggatcaccctaaggagtg
ggatatgtacacagacacactctgctatacgtacaacgcgcaagttcata
cgtctaccaaggcggctccttttgatctcgtgatatcacgtaacctaccg
tcactgcgtatgaggttggatgaagtcaaggaagacaaaccgacaccgga
acagaaccatctgaggtggagaatcgacctgaggttaaggacagagcagg
cgggtccagaattagcgaaaacgcaagctcgttacaaacgtaattcgaac
gaccgacgtcgaagacagttgtcagatctcagggtcggaagatacagctt
tcttcgcgtggcacggcttgagaagcaggatggaccacgtcataagttgc
taccggtagaatccagacctttcaaggtaatggagctcaccaataacaca
gtagtcctgaagacaggagaggacgttgaacgattttcgcgcgatcgtgt
tgaaaccgcaccagacaacccggaaacccaggaaactgagaaagaaagca
ctgtccattag
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protein sequence of Gchil10533.t1

>Gchil10533.t1 ID=Gchil10533.t1|Name=Gchil10533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=437bp
MEMDNDETKLEDQEDQGDYSQLDPLRATHGTEHPDQLDRILITDLLNEQL
TDNFCTAIRSRLNGGEDLPFSLDSRGILLRHVEKHDQIVVPHALKSRVLY
LAHYAKLSGNPGGTKMFMTLRRDFYCPTLAMDCHATVKLCRTCAIDRVKL
YKKRKKMTLFPAKAPLQFVSIDILGELIRSNQGYRYLLLITDRFSKLLRT
VPLKRITALVKAQAFIKHWVYVYGPPEVLLSDNGKQFGAMFFQNVERYNP
TLLAALRHYIADHPKEWDMYTDTLCYTYNAQVHTSTKAAPFDLVISRNLP
SLRMRLDEVKEDKPTPEQNHLRWRIDLRLRTEQAGPELAKTQARYKRNSN
DRRRRQLSDLRVGRYSFLRVARLEKQDGPRHKLLPVESRPFKVMELTNNT
VVLKTGEDVERFSRDRVETAPDNPETQETEKESTVH*
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mRNA from alignment at tig00000159_pilon:463095..464479+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10533.t1 ID=Gchil10533.t1|Name=Gchil10533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1385bp|location=Sequence derived from alignment at tig00000159_pilon:463095..464479+ (Gracilaria chilensis NLEC103_M9 male)
atggagatggacaacgatgaaacgaaacttgaagatcaagaagatcaagg
ggattactcccaattggaccctttaagggcaacccatggaactgaacatc
ctgatcaactcgaccgtatcttgatcactgatctcctcaatgagcaactc
acagataacttctgtacagcaatacgctctcgtcttaacgggggggagga
tctgcccttttcgctcgattcacgaggtatattgctcagacatgtcgaga
agcatgatcagatcgtggttccgcacgctttgaagagtcgtgtactctac
ttggcccattatgcgaagctatctggaaacccaggaggaacaaagatgtt
tatgacactaaggagggacttctattgtccaacgttggcaatggactgcc
atgctacggtaaagctatgccgaacgtgtgcgattgatcgcgtgaaacta
tataagaagaggaaaaagatgactctattcccggcgaaggcgcctctaca
attcgtcagcatcgacatacttggagagctaattcgttccaatcaaggat
atcgctacctactgctaattacggatcgattctcgaagcttttacggacc
gtaccgttgaagaggataaccgccttggtaaaagctcaggctttcataaa
acactgggtgtatgtgtacggaccgccggaagttctgctatcagataatg
gaaaacagtttggcgctatgttctttcagaacgtatgccgaatgttagaa
tattaggcatcaggaacgtgtttaccacgacctaccatccacagtgtaat
ggtcaggtcgaacgctacaaccctacgttattagccgctcttcggcatta
cattgcggatcaccctaaggagtgggatatgtacacagacacactctgct
atacgtacaacgcgcaagttcatacgtctaccaaggcggctccttttgat
ctcgtgatatcacgtaacctaccgtcactgcgtatgaggttggatgaagt
caaggaagacaaaccgacaccggaacagaaccatctgaggtggagaatcg
acctgaggttaaggacagagcaggcgggtccagaattagcgaaaacgcaa
gctcgttacaaacgtaattcgaacgaccgacgtcgaagacagttgtcaga
tctcagggtcggaagatacagctttcttcgcgtggcacggcttgagaagc
aggatggaccacgtcataagttgctaccggtagaatccagacctttcaag
gtaatggagctcaccaataacacagtagtcctgaagacaggagaggacgt
tgaacgattttcgcgcgatcgtgttgaaaccgcaccagacaacccggaaa
cccaggaaactgagaaagaaagcactgtccattag
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Coding sequence (CDS) from alignment at tig00000159_pilon:463095..464479+

>Gchil10533.t1 ID=Gchil10533.t1|Name=Gchil10533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000159_pilon:463095..464479+ (Gracilaria chilensis NLEC103_M9 male)
atggagatggacaacgatgaaacgaaacttgaagatcaagaagatcaagg
ggattactcccaattggaccctttaagggcaacccatggaactgaacatc
ctgatcaactcgaccgtatcttgatcactgatctcctcaatgagcaactc
acagataacttctgtacagcaatacgctctcgtcttaacgggggggagga
tctgcccttttcgctcgattcacgaggtatattgctcagacatgtcgaga
agcatgatcagatcgtggttccgcacgctttgaagagtcgtgtactctac
ttggcccattatgcgaagctatctggaaacccaggaggaacaaagatgtt
tatgacactaaggagggacttctattgtccaacgttggcaatggactgcc
atgctacggtaaagctatgccgaacgtgtgcgattgatcgcgtgaaacta
tataagaagaggaaaaagatgactctattcccggcgaaggcgcctctaca
attcgtcagcatcgacatacttggagagctaattcgttccaatcaaggat
atcgctacctactgctaattacggatcgattctcgaagcttttacggacc
gtaccgttgaagaggataaccgccttggtaaaagctcaggctttcataaa
acactgggtgtatgtgtacggaccgccggaagttctgctatcagataatg
gaaaacagtttggcgctatgttctttcagaacgtcgaacgctacaaccct
acgttattagccgctcttcggcattacattgcggatcaccctaaggagtg
ggatatgtacacagacacactctgctatacgtacaacgcgcaagttcata
cgtctaccaaggcggctccttttgatctcgtgatatcacgtaacctaccg
tcactgcgtatgaggttggatgaagtcaaggaagacaaaccgacaccgga
acagaaccatctgaggtggagaatcgacctgaggttaaggacagagcagg
cgggtccagaattagcgaaaacgcaagctcgttacaaacgtaattcgaac
gaccgacgtcgaagacagttgtcagatctcagggtcggaagatacagctt
tcttcgcgtggcacggcttgagaagcaggatggaccacgtcataagttgc
taccggtagaatccagacctttcaaggtaatggagctcaccaataacaca
gtagtcctgaagacaggagaggacgttgaacgattttcgcgcgatcgtgt
tgaaaccgcaccagacaacccggaaacccaggaaactgagaaagaaagca
ctgtccattag
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