Gchil10532.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10532.t1
Unique NameGchil10532.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:460540..461828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8479.XP_008176374.1
PFAMsRVT_1,SCAN,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue7.16e-09
EggNOG OGsCOG2801@1|root,KOG1721@1|root,KOG0017@2759|Eukaryota,KOG1721@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48B0V@7711|Chordata,499U9@7742|Vertebrata,4CK8P@8459|Testudines
DescriptionK02A2.6-like
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10532Gchil10532Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 460540..461828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10532.t1Gchil10532.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 460540..461828 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10532.t1.start1Gchil10532.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 460540..460542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10532.t1.CDS1Gchil10532.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 460540..460822 +
Gchil10532.t1.CDS2Gchil10532.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 461362..461828 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10532.t1.exon1Gchil10532.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 460540..460822 +
Gchil10532.t1.exon2Gchil10532.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 461362..461828 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10532.t1.intron1Gchil10532.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 460823..461361 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10532.t1.stop1Gchil10532.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 461826..461828 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10532.t1 ID=Gchil10532.t1|Name=Gchil10532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=250bp
MRTHHIPSSGLDPFVGKRVQFDCELKRLWRRFTCPSKRENFIMIMQKRNY
KVYADIDSDKDLLTRRLTVLDTGGGPSFIRISELGPTDQEQIRYDRCRCS
AAPYCSGPDSSLYRRSLEFADVSDESTGAYEGLKEQSQQTEKQRDPDKLV
GEIVLENVPEEYKERIKQMLKKYASMWTGKLGENSATDHHIGVIPGSRSV
SQPPYRAGRRTRQIEEDNVAKMLKAGGIEAAQSAWPSPVVLVPKPDGSL*
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spliced messenger RNA

>Gchil10532.t1 ID=Gchil10532.t1|Name=Gchil10532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000159_pilon:460540..461828+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaggactcatcatattccgtcgagcggattggatccgttcgttggaaa
gcgagtacagtttgactgtgaactcaaacgtctttggagacggtttactt
gtccgtcgaaacgggaaaactttattatgataatgcagaagaggaactat
aaagtttatgccgacatcgactcggacaaggatttattgacccgccgcct
aacagttcttgacacaggcggcggaccgagttttattcggatatccgaac
taggacccaccgatcaggaacaaattcgttacgatcgttgtcgctgctct
gccgcaccctattgtagtggtcccgactcaagtctctaccgcagaagtct
agagtttgcagatgtgtcagacgaatcaactggcgcatatgaaggcctta
aagagcagtcgcaacagacagaaaaacagcgggacccagacaagctggta
ggagaaatagttctcgagaatgtccccgaagaatataaggaaagaatcaa
acaaatgttgaaaaagtatgcctctatgtggactggaaaattaggagaga
attccgctacagaccatcatattggtgttattccgggatctcgttccgtt
tctcagccaccttacagagcaggacggcgaactcgtcaaatcgaggagga
caatgttgccaagatgctcaaagcaggaggaatagaagcagcacaatctg
cttggccttcacctgtggtgttagtcccaaaacctgatggttctttgtga
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protein sequence of Gchil10532.t1

>Gchil10532.t1 ID=Gchil10532.t1|Name=Gchil10532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=250bp
MRTHHIPSSGLDPFVGKRVQFDCELKRLWRRFTCPSKRENFIMIMQKRNY
KVYADIDSDKDLLTRRLTVLDTGGGPSFIRISELGPTDQEQIRYDRCRCS
AAPYCSGPDSSLYRRSLEFADVSDESTGAYEGLKEQSQQTEKQRDPDKLV
GEIVLENVPEEYKERIKQMLKKYASMWTGKLGENSATDHHIGVIPGSRSV
SQPPYRAGRRTRQIEEDNVAKMLKAGGIEAAQSAWPSPVVLVPKPDGSL*
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mRNA from alignment at tig00000159_pilon:460540..461828+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10532.t1 ID=Gchil10532.t1|Name=Gchil10532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1289bp|location=Sequence derived from alignment at tig00000159_pilon:460540..461828+ (Gracilaria chilensis NLEC103_M9 male)
atgaggactcatcatattccgtcgagcggattggatccgttcgttggaaa
gcgagtacagtttgactgtgaactcaaacgtctttggagacggtttactt
gtccgtcgaaacgggaaaactttattatgataatgcagaagaggaactat
aaagtttatgccgacatcgactcggacaaggatttattgacccgccgcct
aacagttcttgacacaggcggcggaccgagttttattcggatatccgaac
taggacccaccgatcaggaacaaattcgttacggtccgttgcctgatatc
cgagatgctaataggaatgcagtgagaacacttggaacagtgaggttgct
cgttcgactcggacactttttggtgaaagtgaattttattttctgcaagt
cactggccgcaccagttgttctgggctgtgatgattgtgacagatttgtc
gaagcaatccgccctaggagtagactagtcacgttagaagatggctcgac
agtgcctatagtgaggagaccactacgaagagtccctacagctgctccac
tcccaccctcaatgaaatacgagttggttggtggtcgcacatcacccaag
attcgtgtgacataacctacagagttaaaggctccgtcctaaacctgggt
acaagtgataacacaacgatacggtctcgtggtaatccagcctaatccag
ctatgtactcgcatcgaggacttctcgcagcgaatggaattgtccaagtt
aaaccggacaaacccttccgaatactcatcagtagctttaccgataacta
ctatcgtttaccgaccaatcagatcgttgtcgctgctctgccgcacccta
ttgtagtggtcccgactcaagtctctaccgcagaagtctagagtttgcag
atgtgtcagacgaatcaactggcgcatatgaaggccttaaagagcagtcg
caacagacagaaaaacagcgggacccagacaagctggtaggagaaatagt
tctcgagaatgtccccgaagaatataaggaaagaatcaaacaaatgttga
aaaagtatgcctctatgtggactggaaaattaggagagaattccgctaca
gaccatcatattggtgttattccgggatctcgttccgtttctcagccacc
ttacagagcaggacggcgaactcgtcaaatcgaggaggacaatgttgcca
agatgctcaaagcaggaggaatagaagcagcacaatctgcttggccttca
cctgtggtgttagtcccaaaacctgatggttctttgtga
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Coding sequence (CDS) from alignment at tig00000159_pilon:460540..461828+

>Gchil10532.t1 ID=Gchil10532.t1|Name=Gchil10532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00000159_pilon:460540..461828+ (Gracilaria chilensis NLEC103_M9 male)
atgaggactcatcatattccgtcgagcggattggatccgttcgttggaaa
gcgagtacagtttgactgtgaactcaaacgtctttggagacggtttactt
gtccgtcgaaacgggaaaactttattatgataatgcagaagaggaactat
aaagtttatgccgacatcgactcggacaaggatttattgacccgccgcct
aacagttcttgacacaggcggcggaccgagttttattcggatatccgaac
taggacccaccgatcaggaacaaattcgttacgatcgttgtcgctgctct
gccgcaccctattgtagtggtcccgactcaagtctctaccgcagaagtct
agagtttgcagatgtgtcagacgaatcaactggcgcatatgaaggcctta
aagagcagtcgcaacagacagaaaaacagcgggacccagacaagctggta
ggagaaatagttctcgagaatgtccccgaagaatataaggaaagaatcaa
acaaatgttgaaaaagtatgcctctatgtggactggaaaattaggagaga
attccgctacagaccatcatattggtgttattccgggatctcgttccgtt
tctcagccaccttacagagcaggacggcgaactcgtcaaatcgaggagga
caatgttgccaagatgctcaaagcaggaggaatagaagcagcacaatctg
cttggccttcacctgtggtgttagtcccaaaacctgatggttctttgtga
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