Gchil10531.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10531.t1
Unique NameGchil10531.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:459923..460441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10531Gchil10531Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 459923..460441 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10531.t1.start1Gchil10531.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 459923..459925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10531.t1.CDS1Gchil10531.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 459923..460441 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10531.t1.exon1Gchil10531.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 459923..460441 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10531.t1.stop1Gchil10531.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 460439..460441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10531.t1Gchil10531.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 459923..460441 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10531.t1 ID=Gchil10531.t1|Name=Gchil10531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=173bp
MTRFRSVTDGRDLSDVLMPVELAIEPITKADGSHKEPKGQQVVIPVGEND
LRAQVVCLKSELNAYRERIIGWSAALHEALIFYLCYGRHHLSSECTLPAK
DLVRVLTNYETLSEEERTRVPAGIYWKVKGWLSYYPGRQSGALVIQNPEV
PQANSQVGSNAPRANDPPQSGN*
back to top

spliced messenger RNA

>Gchil10531.t1 ID=Gchil10531.t1|Name=Gchil10531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000159_pilon:459923..460441+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgacacgctttcgttcggtaaccgatggacgagatctctcggatgtact
catgcccgtggagttggctattgaaccaatcacgaaggccgatggttctc
ataaggaacctaaaggccaacaggtcgtaatccctgttggagaaaatgat
ttacgcgctcaggtggtttgtctcaaatctgagttaaacgcctatcgtga
acgaatcattggatggtcggcagcactccatgaagcgttaatattctatc
tgtgctatggtcgtcatcatctctcttcagaatgtacccttcctgcaaag
gatttagttcgcgtcctcacgaattacgagactctctcagaggaggaaag
aacccgagtgccggctggtatttactggaaggtcaaaggatggcttagct
actatcctggacgtcaatctggagctctagtgattcaaaaccctgaagta
ccacaggctaattcgcaagttggaagcaacgccccaagggcgaacgaccc
gcctcagtcgggaaactaa
back to top

protein sequence of Gchil10531.t1

>Gchil10531.t1 ID=Gchil10531.t1|Name=Gchil10531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=173bp
MTRFRSVTDGRDLSDVLMPVELAIEPITKADGSHKEPKGQQVVIPVGEND
LRAQVVCLKSELNAYRERIIGWSAALHEALIFYLCYGRHHLSSECTLPAK
DLVRVLTNYETLSEEERTRVPAGIYWKVKGWLSYYPGRQSGALVIQNPEV
PQANSQVGSNAPRANDPPQSGN*
back to top

mRNA from alignment at tig00000159_pilon:459923..460441+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10531.t1 ID=Gchil10531.t1|Name=Gchil10531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000159_pilon:459923..460441+ (Gracilaria chilensis NLEC103_M9 male)
atgacacgctttcgttcggtaaccgatggacgagatctctcggatgtact
catgcccgtggagttggctattgaaccaatcacgaaggccgatggttctc
ataaggaacctaaaggccaacaggtcgtaatccctgttggagaaaatgat
ttacgcgctcaggtggtttgtctcaaatctgagttaaacgcctatcgtga
acgaatcattggatggtcggcagcactccatgaagcgttaatattctatc
tgtgctatggtcgtcatcatctctcttcagaatgtacccttcctgcaaag
gatttagttcgcgtcctcacgaattacgagactctctcagaggaggaaag
aacccgagtgccggctggtatttactggaaggtcaaaggatggcttagct
actatcctggacgtcaatctggagctctagtgattcaaaaccctgaagta
ccacaggctaattcgcaagttggaagcaacgccccaagggcgaacgaccc
gcctcagtcgggaaactaa
back to top

Coding sequence (CDS) from alignment at tig00000159_pilon:459923..460441+

>Gchil10531.t1 ID=Gchil10531.t1|Name=Gchil10531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000159_pilon:459923..460441+ (Gracilaria chilensis NLEC103_M9 male)
atgacacgctttcgttcggtaaccgatggacgagatctctcggatgtact
catgcccgtggagttggctattgaaccaatcacgaaggccgatggttctc
ataaggaacctaaaggccaacaggtcgtaatccctgttggagaaaatgat
ttacgcgctcaggtggtttgtctcaaatctgagttaaacgcctatcgtga
acgaatcattggatggtcggcagcactccatgaagcgttaatattctatc
tgtgctatggtcgtcatcatctctcttcagaatgtacccttcctgcaaag
gatttagttcgcgtcctcacgaattacgagactctctcagaggaggaaag
aacccgagtgccggctggtatttactggaaggtcaaaggatggcttagct
actatcctggacgtcaatctggagctctagtgattcaaaaccctgaagta
ccacaggctaattcgcaagttggaagcaacgccccaagggcgaacgaccc
gcctcagtcgggaaactaa
back to top