Gchil10530.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10530.t1
Unique NameGchil10530.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:457784..458779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog281687.CJA21240
PFAMsDDE_3,HTH_38,HTH_Tnp_Tc3_1,HTH_Tnp_Tc3_2
Max annot lvl33208|Metazoa
Evalue1.58e-92
EggNOG OGs2CXRP@1|root,2RZ9M@2759|Eukaryota,3A84X@33154|Opisthokonta,3BTAV@33208|Metazoa,3DA3Q@33213|Bilateria,40QVA@6231|Nematoda,1M7S6@119089|Chromadorea,40SEC@6236|Rhabditida
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10530Gchil10530Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 457784..458779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10530.t1.stop1Gchil10530.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 457784..457786 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10530.t1.CDS1Gchil10530.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 457784..458779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10530.t1.exon1Gchil10530.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 457784..458779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10530.t1.start1Gchil10530.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 458777..458779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10530.t1Gchil10530.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 457784..458779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10530.t1 ID=Gchil10530.t1|Name=Gchil10530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=332bp
MARGAPLTRSEQLEIMELVGQGMIPADIARKLKRSPKTISNFIKNPAAYG
TKRSTGRPTALSPADKRGIKRELCHNTSSCGKIVKNLNLPLSRSTIWREV
NRQNLFKYTKMRKTFFLKDNHKKNRVEWCAQKAYWKTEWNNVIFSDEKKF
NLDGPDCYKFYWHDLRKEKKEFVTRHSGGASVMVWAGISTKGATDMAFVE
TTMNSEKYAEVLENYLLPFSYCMHGEEFIFQQDNAPVHKSNSMKQWFNSL
NMSVMEWPARSPDLNPIENIWGMLARMVYGQGRQFDTVFDLKNCIKDCWE
KIDCIAINPFIESMPKRCISVIQARGAKINY*
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spliced messenger RNA

>Gchil10530.t1 ID=Gchil10530.t1|Name=Gchil10530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000159_pilon:457784..458779- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGTGGCGCACCTCTCACACGCTCTGAACAGCTGGAAATCATGGA
ATTAGTAGGTCAGGGTATGATTCCAGCAGATATAGCCCGAAAACTCAAGC
GCAGCCCAAAAACAATCAGCAACTTCATCAAAAACCCCGCTGCATACGGA
ACAAAGCGTTCAACCGGCCGTCCTACGGCACTATCCCCGGCCGATAAGCG
TGGAATTAAGCGAGAACTATGCCACAACACTTCATCTTGCGGGAAAATTG
TCAAAAATCTAAATTTGCCTCTATCACGATCTACAATATGGCGTGAAGTC
AACCGTCAAAATTTGTTCAAGTACACAAAAATGAGGAAAACTTTTTTTTT
AAAAGATAATCACAAGAAAAATCGAGTTGAATGGTGTGCTCAAAAGGCTT
ATTGGAAAACGGAATGGAATAATGTTATCTTTTCCGACGAAAAAAAGTTT
AACCTTGATGGTCCAGATTGCTATAAATTTTATTGGCATGATCTACGAAA
AGAAAAGAAGGAATTTGTGACTAGGCATTCAGGAGGCGCATCAGTAATGG
TTTGGGCTGGAATCTCCACGAAAGGAGCAACTGATATGGCTTTTGTTGAA
ACTACAATGAACTCTGAGAAGTATGCTGAGGTTCTAGAAAACTATCTTTT
ACCTTTTTCATACTGTATGCACGGAGAAGAATTCATTTTTCAGCAAGATA
ATGCACCTGTGCATAAGTCTAATTCTATGAAACAGTGGTTCAATAGTCTA
AATATGTCGGTTATGGAATGGCCTGCGCGCTCTCCTGACCTCAACCCTAT
CGAAAACATTTGGGGAATGTTGGCCCGAATGGTTTATGGGCAAGGAAGGC
AGTTTGATACAGTTTTTGATTTGAAAAATTGTATCAAAGATTGCTGGGAA
AAGATTGACTGTATTGCTATCAATCCTTTTATAGAATCAATGCCAAAGCG
TTGTATAAGTGTTATACAGGCTAGAGGAGCAAAAATAAACTACTGA
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protein sequence of Gchil10530.t1

>Gchil10530.t1 ID=Gchil10530.t1|Name=Gchil10530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=332bp
MARGAPLTRSEQLEIMELVGQGMIPADIARKLKRSPKTISNFIKNPAAYG
TKRSTGRPTALSPADKRGIKRELCHNTSSCGKIVKNLNLPLSRSTIWREV
NRQNLFKYTKMRKTFFLKDNHKKNRVEWCAQKAYWKTEWNNVIFSDEKKF
NLDGPDCYKFYWHDLRKEKKEFVTRHSGGASVMVWAGISTKGATDMAFVE
TTMNSEKYAEVLENYLLPFSYCMHGEEFIFQQDNAPVHKSNSMKQWFNSL
NMSVMEWPARSPDLNPIENIWGMLARMVYGQGRQFDTVFDLKNCIKDCWE
KIDCIAINPFIESMPKRCISVIQARGAKINY*
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mRNA from alignment at tig00000159_pilon:457784..458779-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10530.t1 ID=Gchil10530.t1|Name=Gchil10530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000159_pilon:457784..458779- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGTGGCGCACCTCTCACACGCTCTGAACAGCTGGAAATCATGGA
ATTAGTAGGTCAGGGTATGATTCCAGCAGATATAGCCCGAAAACTCAAGC
GCAGCCCAAAAACAATCAGCAACTTCATCAAAAACCCCGCTGCATACGGA
ACAAAGCGTTCAACCGGCCGTCCTACGGCACTATCCCCGGCCGATAAGCG
TGGAATTAAGCGAGAACTATGCCACAACACTTCATCTTGCGGGAAAATTG
TCAAAAATCTAAATTTGCCTCTATCACGATCTACAATATGGCGTGAAGTC
AACCGTCAAAATTTGTTCAAGTACACAAAAATGAGGAAAACTTTTTTTTT
AAAAGATAATCACAAGAAAAATCGAGTTGAATGGTGTGCTCAAAAGGCTT
ATTGGAAAACGGAATGGAATAATGTTATCTTTTCCGACGAAAAAAAGTTT
AACCTTGATGGTCCAGATTGCTATAAATTTTATTGGCATGATCTACGAAA
AGAAAAGAAGGAATTTGTGACTAGGCATTCAGGAGGCGCATCAGTAATGG
TTTGGGCTGGAATCTCCACGAAAGGAGCAACTGATATGGCTTTTGTTGAA
ACTACAATGAACTCTGAGAAGTATGCTGAGGTTCTAGAAAACTATCTTTT
ACCTTTTTCATACTGTATGCACGGAGAAGAATTCATTTTTCAGCAAGATA
ATGCACCTGTGCATAAGTCTAATTCTATGAAACAGTGGTTCAATAGTCTA
AATATGTCGGTTATGGAATGGCCTGCGCGCTCTCCTGACCTCAACCCTAT
CGAAAACATTTGGGGAATGTTGGCCCGAATGGTTTATGGGCAAGGAAGGC
AGTTTGATACAGTTTTTGATTTGAAAAATTGTATCAAAGATTGCTGGGAA
AAGATTGACTGTATTGCTATCAATCCTTTTATAGAATCAATGCCAAAGCG
TTGTATAAGTGTTATACAGGCTAGAGGAGCAAAAATAAACTACTGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:457784..458779-

>Gchil10530.t1 ID=Gchil10530.t1|Name=Gchil10530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000159_pilon:457784..458779- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGTGGCGCACCTCTCACACGCTCTGAACAGCTGGAAATCATGGA
ATTAGTAGGTCAGGGTATGATTCCAGCAGATATAGCCCGAAAACTCAAGC
GCAGCCCAAAAACAATCAGCAACTTCATCAAAAACCCCGCTGCATACGGA
ACAAAGCGTTCAACCGGCCGTCCTACGGCACTATCCCCGGCCGATAAGCG
TGGAATTAAGCGAGAACTATGCCACAACACTTCATCTTGCGGGAAAATTG
TCAAAAATCTAAATTTGCCTCTATCACGATCTACAATATGGCGTGAAGTC
AACCGTCAAAATTTGTTCAAGTACACAAAAATGAGGAAAACTTTTTTTTT
AAAAGATAATCACAAGAAAAATCGAGTTGAATGGTGTGCTCAAAAGGCTT
ATTGGAAAACGGAATGGAATAATGTTATCTTTTCCGACGAAAAAAAGTTT
AACCTTGATGGTCCAGATTGCTATAAATTTTATTGGCATGATCTACGAAA
AGAAAAGAAGGAATTTGTGACTAGGCATTCAGGAGGCGCATCAGTAATGG
TTTGGGCTGGAATCTCCACGAAAGGAGCAACTGATATGGCTTTTGTTGAA
ACTACAATGAACTCTGAGAAGTATGCTGAGGTTCTAGAAAACTATCTTTT
ACCTTTTTCATACTGTATGCACGGAGAAGAATTCATTTTTCAGCAAGATA
ATGCACCTGTGCATAAGTCTAATTCTATGAAACAGTGGTTCAATAGTCTA
AATATGTCGGTTATGGAATGGCCTGCGCGCTCTCCTGACCTCAACCCTAT
CGAAAACATTTGGGGAATGTTGGCCCGAATGGTTTATGGGCAAGGAAGGC
AGTTTGATACAGTTTTTGATTTGAAAAATTGTATCAAAGATTGCTGGGAA
AAGATTGACTGTATTGCTATCAATCCTTTTATAGAATCAATGCCAAAGCG
TTGTATAAGTGTTATACAGGCTAGAGGAGCAAAAATAAACTACTGA
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