Gchil10529.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10529.t1
Unique NameGchil10529.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:454357..454804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN112CT
PFAMsRibosomal_L23
Max annot lvl2759|Eukaryota
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue1.15e-17
EggNOG OGsKOG4089@1|root,KOG4089@2759|Eukaryota
Descriptionmitochondrial translation
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10529Gchil10529Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 454357..454804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10529.t1Gchil10529.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 454357..454804 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10529.t1.stop1Gchil10529.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 454357..454359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10529.t1.CDS1Gchil10529.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 454357..454632 -
Gchil10529.t1.CDS2Gchil10529.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 454715..454804 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10529.t1.exon1Gchil10529.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 454357..454632 -
Gchil10529.t1.exon2Gchil10529.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 454715..454804 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10529.t1.intron1Gchil10529.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 454633..454714 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10529.t1.start1Gchil10529.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 454802..454804 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10529.t1 ID=Gchil10529.t1|Name=Gchil10529.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=122bp
MPPRFWMPNFPLVLRLKAPSRVYPHVKMPPDGTEGTFKTTEIVLETVQQL
TKPEMMRFLRAVYGLDVKRIKTVNVMGHRRNEISRMPRRDKDFKRFYVKL
NQAVELPNVPKAIDIVKNEAV*
back to top

spliced messenger RNA

>Gchil10529.t1 ID=Gchil10529.t1|Name=Gchil10529.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp|location=Sequence derived from alignment at tig00000159_pilon:454357..454804- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCGAGATTCTGGATGCCTAACTTTCCCCTTGTACTCAGACTAAA
GGCGCCGTCGCGTGTCTACCCGCATGTGAAGATGCCACCGGATGGCACTG
AGGGAACGTTTAAAACCACGGAAATTGTTCTTGAAACAGTCCAACAACTC
ACAAAGCCTGAGATGATGCGATTTCTTAGAGCTGTGTACGGGCTTGATGT
GAAGCGCATTAAGACCGTTAATGTCATGGGACATAGAAGAAATGAGATAA
GCAGAATGCCGCGACGGGACAAGGACTTCAAACGTTTCTACGTCAAACTC
AACCAAGCCGTCGAACTTCCCAACGTACCAAAAGCTATAGATATCGTCAA
AAACGAAGCCGTCTAA
back to top

protein sequence of Gchil10529.t1

>Gchil10529.t1 ID=Gchil10529.t1|Name=Gchil10529.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=122bp
MPPRFWMPNFPLVLRLKAPSRVYPHVKMPPDGTEGTFKTTEIVLETVQQL
TKPEMMRFLRAVYGLDVKRIKTVNVMGHRRNEISRMPRRDKDFKRFYVKL
NQAVELPNVPKAIDIVKNEAV*
back to top

mRNA from alignment at tig00000159_pilon:454357..454804-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10529.t1 ID=Gchil10529.t1|Name=Gchil10529.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp|location=Sequence derived from alignment at tig00000159_pilon:454357..454804- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCCGAGATTCTGGATGCCTAACTTTCCCCTTGTACTCAGACTAAA
GGCGCCGTCGCGTGTCTACCCGCATGTGAAGATGCCACCGGTAAGTGTAT
TTTTCTACTTTGCTTAGCATGGTATTTGAGATCCTTTGAGCAGAAATGTG
CTGACCAACTCGCGATTTGCAGGATGGCACTGAGGGAACGTTTAAAACCA
CGGAAATTGTTCTTGAAACAGTCCAACAACTCACAAAGCCTGAGATGATG
CGATTTCTTAGAGCTGTGTACGGGCTTGATGTGAAGCGCATTAAGACCGT
TAATGTCATGGGACATAGAAGAAATGAGATAAGCAGAATGCCGCGACGGG
ACAAGGACTTCAAACGTTTCTACGTCAAACTCAACCAAGCCGTCGAACTT
CCCAACGTACCAAAAGCTATAGATATCGTCAAAAACGAAGCCGTCTAA
back to top

Coding sequence (CDS) from alignment at tig00000159_pilon:454357..454804-

>Gchil10529.t1 ID=Gchil10529.t1|Name=Gchil10529.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=366bp|location=Sequence derived from alignment at tig00000159_pilon:454357..454804- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCCGAGATTCTGGATGCCTAACTTTCCCCTTGTACTCAGACTAAA
GGCGCCGTCGCGTGTCTACCCGCATGTGAAGATGCCACCGGATGGCACTG
AGGGAACGTTTAAAACCACGGAAATTGTTCTTGAAACAGTCCAACAACTC
ACAAAGCCTGAGATGATGCGATTTCTTAGAGCTGTGTACGGGCTTGATGT
GAAGCGCATTAAGACCGTTAATGTCATGGGACATAGAAGAAATGAGATAA
GCAGAATGCCGCGACGGGACAAGGACTTCAAACGTTTCTACGTCAAACTC
AACCAAGCCGTCGAACTTCCCAACGTACCAAAAGCTATAGATATCGTCAA
AAACGAAGCCGTCTAA
back to top