Gchil10528.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10528.t1
Unique Name	Gchil10528.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000159_pilon	contig	tig00000159_pilon:453256..454284 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173025.GEI7407_2710
PFAMs	DUF1731,Epimerase
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K07071
Evalue	1.64e-88
EggNOG OGs	COG1090@1\|root,COG1090@2\|Bacteria,1G1NR@1117\|Cyanobacteria,1H9DM@1150\|Oscillatoriales
Description	PFAM NAD dependent epimerase dehydratase family
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10528	Gchil10528	Gracilaria chilensis NLEC103_M9 male	gene	tig00000159_pilon 453256..454284 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10528.t1.start1	Gchil10528.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000159_pilon 453256..453258 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10528.t1.CDS1	Gchil10528.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000159_pilon 453256..454284 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10528.t1.exon1	Gchil10528.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000159_pilon 453256..454284 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10528.t1.stop1	Gchil10528.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000159_pilon 454282..454284 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10528.t1	Gchil10528.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000159_pilon 453256..454284 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000159_pilon:453256..454284+
coding sequence from alignment at tig00000159_pilon:453256..454284+

mRNA sequence

>Gchil10528.t1 ID=Gchil10528.t1|Name=Gchil10528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=343bp
MQDSQPLPSVDEGIVRALYGRRILISGGTGLIGRNMVRRLQQSSANICLL
SRRPSQARALFEDENENIPTVLMYDAEPDKPVSDDVLNAIGTADAIINLA
GEPVEEKRWTPERKLVLFNSRVNGTRKLVNAIRKQSSKAVLVSASAVGYY
GTSESRIFTEECGAGEDYLATIARSWEHAALGNAEHSRTVVLRLGVVLSN
EGGALPRISAAFRAFLGGPPGGGQQWFSWVHIEDVVRLLLRASVDDKWNG
IYNATAPQPVRLAEFCSELGRALGRPSWLPVPKQAIQAMMGNEAAQLILS
GQQVIPKRTKENGFVFKYKDVGSALQQLTNSRDAQLLETKLN*

spliced messenger RNA

>Gchil10528.t1 ID=Gchil10528.t1|Name=Gchil10528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000159_pilon:453256..454284+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGATTCGCAACCGCTTCCCTCTGTAGATGAGGGTATTGTACGGGC
ACTTTACGGACGGCGCATCCTCATTTCCGGTGGAACAGGTCTTATTGGGC
GTAATATGGTCCGTCGACTTCAACAATCCAGTGCTAATATATGCTTGCTT
TCCCGCCGACCTTCACAAGCCAGGGCTCTATTTGAGGATGAAAATGAGAA
CATACCAACCGTTCTTATGTATGACGCCGAGCCAGACAAGCCTGTTTCGG
ATGACGTCTTAAATGCCATTGGCACAGCCGATGCAATCATTAATCTCGCG
GGAGAGCCGGTCGAGGAAAAGCGATGGACTCCTGAGAGGAAACTTGTTTT
GTTCAATTCTAGAGTGAATGGCACACGGAAGTTGGTCAATGCCATCCGAA
AACAAAGCTCGAAAGCCGTCCTCGTCAGCGCCTCCGCAGTAGGTTACTAC
GGCACATCTGAATCTAGAATATTTACAGAAGAGTGTGGCGCCGGGGAAGA
TTACTTAGCTACGATAGCTCGCTCATGGGAGCACGCAGCTTTGGGAAACG
CCGAGCATTCCCGAACAGTTGTTCTTCGACTGGGGGTTGTTTTGAGCAAC
GAAGGAGGTGCACTACCTAGAATAAGCGCAGCTTTTCGTGCGTTTCTCGG
CGGTCCGCCAGGAGGTGGCCAGCAATGGTTCTCTTGGGTGCATATAGAAG
ATGTGGTACGTTTGCTATTGAGGGCCAGCGTAGATGATAAGTGGAACGGA
ATTTATAACGCGACAGCACCGCAACCTGTACGTCTTGCAGAATTTTGTAG
TGAACTAGGAAGGGCTCTCGGACGCCCGAGTTGGCTGCCTGTACCGAAAC
AGGCTATACAGGCAATGATGGGAAATGAAGCCGCTCAACTTATTCTATCC
GGTCAACAAGTGATTCCAAAGCGAACAAAGGAGAACGGTTTTGTGTTCAA
GTACAAAGATGTGGGCTCAGCCCTGCAGCAACTCACGAACTCCCGTGACG
CGCAGTTGCTCGAAACCAAGTTAAACTGA

protein sequence of Gchil10528.t1

>Gchil10528.t1 ID=Gchil10528.t1|Name=Gchil10528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=343bp
MQDSQPLPSVDEGIVRALYGRRILISGGTGLIGRNMVRRLQQSSANICLL
SRRPSQARALFEDENENIPTVLMYDAEPDKPVSDDVLNAIGTADAIINLA
GEPVEEKRWTPERKLVLFNSRVNGTRKLVNAIRKQSSKAVLVSASAVGYY
GTSESRIFTEECGAGEDYLATIARSWEHAALGNAEHSRTVVLRLGVVLSN
EGGALPRISAAFRAFLGGPPGGGQQWFSWVHIEDVVRLLLRASVDDKWNG
IYNATAPQPVRLAEFCSELGRALGRPSWLPVPKQAIQAMMGNEAAQLILS
GQQVIPKRTKENGFVFKYKDVGSALQQLTNSRDAQLLETKLN*

mRNA from alignment at tig00000159_pilon:453256..454284+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10528.t1 ID=Gchil10528.t1|Name=Gchil10528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000159_pilon:453256..454284+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGATTCGCAACCGCTTCCCTCTGTAGATGAGGGTATTGTACGGGC
ACTTTACGGACGGCGCATCCTCATTTCCGGTGGAACAGGTCTTATTGGGC
GTAATATGGTCCGTCGACTTCAACAATCCAGTGCTAATATATGCTTGCTT
TCCCGCCGACCTTCACAAGCCAGGGCTCTATTTGAGGATGAAAATGAGAA
CATACCAACCGTTCTTATGTATGACGCCGAGCCAGACAAGCCTGTTTCGG
ATGACGTCTTAAATGCCATTGGCACAGCCGATGCAATCATTAATCTCGCG
GGAGAGCCGGTCGAGGAAAAGCGATGGACTCCTGAGAGGAAACTTGTTTT
GTTCAATTCTAGAGTGAATGGCACACGGAAGTTGGTCAATGCCATCCGAA
AACAAAGCTCGAAAGCCGTCCTCGTCAGCGCCTCCGCAGTAGGTTACTAC
GGCACATCTGAATCTAGAATATTTACAGAAGAGTGTGGCGCCGGGGAAGA
TTACTTAGCTACGATAGCTCGCTCATGGGAGCACGCAGCTTTGGGAAACG
CCGAGCATTCCCGAACAGTTGTTCTTCGACTGGGGGTTGTTTTGAGCAAC
GAAGGAGGTGCACTACCTAGAATAAGCGCAGCTTTTCGTGCGTTTCTCGG
CGGTCCGCCAGGAGGTGGCCAGCAATGGTTCTCTTGGGTGCATATAGAAG
ATGTGGTACGTTTGCTATTGAGGGCCAGCGTAGATGATAAGTGGAACGGA
ATTTATAACGCGACAGCACCGCAACCTGTACGTCTTGCAGAATTTTGTAG
TGAACTAGGAAGGGCTCTCGGACGCCCGAGTTGGCTGCCTGTACCGAAAC
AGGCTATACAGGCAATGATGGGAAATGAAGCCGCTCAACTTATTCTATCC
GGTCAACAAGTGATTCCAAAGCGAACAAAGGAGAACGGTTTTGTGTTCAA
GTACAAAGATGTGGGCTCAGCCCTGCAGCAACTCACGAACTCCCGTGACG
CGCAGTTGCTCGAAACCAAGTTAAACTGA

Coding sequence (CDS) from alignment at tig00000159_pilon:453256..454284+

>Gchil10528.t1 ID=Gchil10528.t1|Name=Gchil10528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000159_pilon:453256..454284+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGATTCGCAACCGCTTCCCTCTGTAGATGAGGGTATTGTACGGGC
ACTTTACGGACGGCGCATCCTCATTTCCGGTGGAACAGGTCTTATTGGGC
GTAATATGGTCCGTCGACTTCAACAATCCAGTGCTAATATATGCTTGCTT
TCCCGCCGACCTTCACAAGCCAGGGCTCTATTTGAGGATGAAAATGAGAA
CATACCAACCGTTCTTATGTATGACGCCGAGCCAGACAAGCCTGTTTCGG
ATGACGTCTTAAATGCCATTGGCACAGCCGATGCAATCATTAATCTCGCG
GGAGAGCCGGTCGAGGAAAAGCGATGGACTCCTGAGAGGAAACTTGTTTT
GTTCAATTCTAGAGTGAATGGCACACGGAAGTTGGTCAATGCCATCCGAA
AACAAAGCTCGAAAGCCGTCCTCGTCAGCGCCTCCGCAGTAGGTTACTAC
GGCACATCTGAATCTAGAATATTTACAGAAGAGTGTGGCGCCGGGGAAGA
TTACTTAGCTACGATAGCTCGCTCATGGGAGCACGCAGCTTTGGGAAACG
CCGAGCATTCCCGAACAGTTGTTCTTCGACTGGGGGTTGTTTTGAGCAAC
GAAGGAGGTGCACTACCTAGAATAAGCGCAGCTTTTCGTGCGTTTCTCGG
CGGTCCGCCAGGAGGTGGCCAGCAATGGTTCTCTTGGGTGCATATAGAAG
ATGTGGTACGTTTGCTATTGAGGGCCAGCGTAGATGATAAGTGGAACGGA
ATTTATAACGCGACAGCACCGCAACCTGTACGTCTTGCAGAATTTTGTAG
TGAACTAGGAAGGGCTCTCGGACGCCCGAGTTGGCTGCCTGTACCGAAAC
AGGCTATACAGGCAATGATGGGAAATGAAGCCGCTCAACTTATTCTATCC
GGTCAACAAGTGATTCCAAAGCGAACAAAGGAGAACGGTTTTGTGTTCAA
GTACAAAGATGTGGGCTCAGCCCTGCAGCAACTCACGAACTCCCGTGACG
CGCAGTTGCTCGAAACCAAGTTAAACTGA