Gchil10527.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10527.t1
Unique Name	Gchil10527.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	548

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000159_pilon	contig	tig00000159_pilon:450300..451943 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703131.1
PFAMs	p450
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07427,ko:K07428,ko:K12795
KEGG Pathway	ko04621,ko04626,ko04726,map04621,map04626,map04726
Evalue	1.35e-105
EggNOG OGs	COG2124@1\|root,KOG0157@2759\|Eukaryota
EC	1.14.14.1
Description	iron ion binding
COG category	Q
BRITE	ko00000,ko00001,ko00199,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10527	Gchil10527	Gracilaria chilensis NLEC103_M9 male	gene	tig00000159_pilon 450300..451943 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10527.t1.start1	Gchil10527.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000159_pilon 450300..450302 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10527.t1.CDS1	Gchil10527.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000159_pilon 450300..451943 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10527.t1.exon1	Gchil10527.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000159_pilon 450300..451943 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10527.t1.stop1	Gchil10527.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000159_pilon 451941..451943 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10527.t1	Gchil10527.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000159_pilon 450300..451943 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000159_pilon:450300..451943+
coding sequence from alignment at tig00000159_pilon:450300..451943+

mRNA sequence

>Gchil10527.t1 ID=Gchil10527.t1|Name=Gchil10527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=548bp
MLRSVYDGGTPALQSVQRTVEDVLQSQKPDTHQSVSPSMGNNVSVLVGVA
AVSAASAAVYSCAKLHVRRSRYSHFETKRPAPGPTPLPFLGNVLQLRTHY
YETLYRYVDHPISIFWVMTDPFIVVNDEEALRRVLGGAGGVYTKPRYFGY
RSKAVSNAVRVEKNLVAKESIQYDPNGDISRAALESMIVSSFGTIKTSMI
GLLHDLEIASCDYYNVKSTADCDTVRPVRRSIVGLNLNLLFGVSGDRGED
IDDHCVSETISSAGSEFARRMVNPLKVLIDLPSNVKFMWDVGALISLGRR
LCGILDDTVKNSGCPSGEGCKMNASGASWVHAWIGKVGTIGKLGKVVGLL
MASTQTVPLAAVWMLHLVANDEKVKGMLRQELKDLEVDTIRDLGYEHLDK
MKVADAVIKETLRLYPPFPLIQRQARFDDVLADVNISSNSIVYVVPWLVH
RNPKYWKNAHEFMPERFLEGSSSHGDAPSDWLYLPFGRGSRMCAGSKLAI
TELKILLCHTLCSYEWESRREIISRDSRFPELGMDPKGIRMSFRRRK*

spliced messenger RNA

>Gchil10527.t1 ID=Gchil10527.t1|Name=Gchil10527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000159_pilon:450300..451943+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGTTCAGTATACGATGGAGGGACGCCCGCTCTGCAATCCGTTCA
ACGTACTGTTGAAGATGTTCTTCAATCTCAGAAACCCGACACCCACCAAT
CCGTATCTCCATCCATGGGGAACAATGTATCTGTACTAGTCGGCGTTGCC
GCCGTTTCAGCCGCAAGCGCCGCTGTTTACTCCTGTGCAAAGCTTCATGT
ACGAAGAAGTCGCTACTCTCACTTTGAAACCAAGCGGCCAGCACCAGGAC
CCACTCCACTTCCCTTTCTTGGAAACGTTCTACAATTGCGAACCCATTAC
TACGAAACACTATATCGCTATGTCGATCACCCAATTAGCATTTTCTGGGT
AATGACTGATCCATTTATCGTGGTTAACGATGAAGAGGCGTTGCGACGTG
TGTTGGGTGGTGCCGGTGGGGTTTATACCAAACCCAGATATTTTGGGTAT
CGTTCGAAGGCAGTTAGTAATGCCGTTCGGGTCGAAAAGAACTTGGTGGC
AAAAGAATCCATTCAGTATGATCCCAACGGGGATATTTCTCGTGCTGCTC
TTGAGTCCATGATTGTTTCGTCGTTTGGTACCATCAAGACCTCTATGATT
GGCCTTCTGCATGACCTTGAGATTGCTTCCTGTGATTATTACAACGTTAA
ATCGACTGCGGATTGCGATACTGTGAGACCAGTTAGACGGAGTATAGTTG
GACTCAATTTAAATCTATTGTTTGGTGTCTCTGGAGACCGTGGTGAGGAT
ATCGATGACCACTGCGTTTCTGAGACTATATCGTCAGCTGGATCCGAGTT
TGCAAGACGAATGGTCAATCCATTGAAGGTGCTTATTGATCTTCCCAGCA
ATGTGAAGTTCATGTGGGATGTAGGCGCTTTAATATCTCTTGGCCGGAGA
CTGTGCGGCATCTTGGACGATACTGTAAAGAATTCTGGCTGTCCATCAGG
TGAAGGTTGTAAGATGAATGCTTCAGGAGCAAGTTGGGTTCATGCGTGGA
TTGGCAAGGTAGGAACCATTGGGAAGCTGGGAAAAGTCGTTGGTTTACTC
ATGGCCTCTACTCAGACCGTGCCTCTAGCCGCTGTGTGGATGCTTCATCT
CGTAGCGAATGATGAAAAAGTGAAGGGTATGTTAAGGCAAGAGCTGAAGG
ATCTCGAAGTTGACACTATTAGAGACTTGGGATATGAACATCTTGACAAG
ATGAAAGTCGCAGATGCAGTTATCAAGGAAACGCTGCGCTTGTATCCACC
ATTCCCTCTCATTCAAAGGCAAGCTCGTTTTGACGATGTGCTCGCTGACG
TCAATATTTCATCCAACTCAATTGTTTATGTCGTACCATGGCTAGTTCAT
AGAAATCCAAAGTACTGGAAAAATGCTCATGAGTTCATGCCTGAAAGGTT
CTTGGAAGGAAGCAGTTCCCATGGGGATGCACCGAGCGACTGGTTATATC
TTCCATTTGGTCGCGGGTCAAGGATGTGCGCCGGTTCGAAACTTGCCATT
ACAGAATTGAAGATTCTTCTCTGCCACACTCTTTGTTCGTACGAGTGGGA
AAGCAGGCGAGAAATAATCTCTCGAGATAGTAGATTCCCAGAACTTGGTA
TGGATCCCAAAGGAATCAGGATGTCGTTCCGAAGGAGGAAGTGA

protein sequence of Gchil10527.t1

>Gchil10527.t1 ID=Gchil10527.t1|Name=Gchil10527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=548bp
MLRSVYDGGTPALQSVQRTVEDVLQSQKPDTHQSVSPSMGNNVSVLVGVA
AVSAASAAVYSCAKLHVRRSRYSHFETKRPAPGPTPLPFLGNVLQLRTHY
YETLYRYVDHPISIFWVMTDPFIVVNDEEALRRVLGGAGGVYTKPRYFGY
RSKAVSNAVRVEKNLVAKESIQYDPNGDISRAALESMIVSSFGTIKTSMI
GLLHDLEIASCDYYNVKSTADCDTVRPVRRSIVGLNLNLLFGVSGDRGED
IDDHCVSETISSAGSEFARRMVNPLKVLIDLPSNVKFMWDVGALISLGRR
LCGILDDTVKNSGCPSGEGCKMNASGASWVHAWIGKVGTIGKLGKVVGLL
MASTQTVPLAAVWMLHLVANDEKVKGMLRQELKDLEVDTIRDLGYEHLDK
MKVADAVIKETLRLYPPFPLIQRQARFDDVLADVNISSNSIVYVVPWLVH
RNPKYWKNAHEFMPERFLEGSSSHGDAPSDWLYLPFGRGSRMCAGSKLAI
TELKILLCHTLCSYEWESRREIISRDSRFPELGMDPKGIRMSFRRRK*

mRNA from alignment at tig00000159_pilon:450300..451943+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10527.t1 ID=Gchil10527.t1|Name=Gchil10527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000159_pilon:450300..451943+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTACGTTCAGTATACGATGGAGGGACGCCCGCTCTGCAATCCGTTCA
ACGTACTGTTGAAGATGTTCTTCAATCTCAGAAACCCGACACCCACCAAT
CCGTATCTCCATCCATGGGGAACAATGTATCTGTACTAGTCGGCGTTGCC
GCCGTTTCAGCCGCAAGCGCCGCTGTTTACTCCTGTGCAAAGCTTCATGT
ACGAAGAAGTCGCTACTCTCACTTTGAAACCAAGCGGCCAGCACCAGGAC
CCACTCCACTTCCCTTTCTTGGAAACGTTCTACAATTGCGAACCCATTAC
TACGAAACACTATATCGCTATGTCGATCACCCAATTAGCATTTTCTGGGT
AATGACTGATCCATTTATCGTGGTTAACGATGAAGAGGCGTTGCGACGTG
TGTTGGGTGGTGCCGGTGGGGTTTATACCAAACCCAGATATTTTGGGTAT
CGTTCGAAGGCAGTTAGTAATGCCGTTCGGGTCGAAAAGAACTTGGTGGC
AAAAGAATCCATTCAGTATGATCCCAACGGGGATATTTCTCGTGCTGCTC
TTGAGTCCATGATTGTTTCGTCGTTTGGTACCATCAAGACCTCTATGATT
GGCCTTCTGCATGACCTTGAGATTGCTTCCTGTGATTATTACAACGTTAA
ATCGACTGCGGATTGCGATACTGTGAGACCAGTTAGACGGAGTATAGTTG
GACTCAATTTAAATCTATTGTTTGGTGTCTCTGGAGACCGTGGTGAGGAT
ATCGATGACCACTGCGTTTCTGAGACTATATCGTCAGCTGGATCCGAGTT
TGCAAGACGAATGGTCAATCCATTGAAGGTGCTTATTGATCTTCCCAGCA
ATGTGAAGTTCATGTGGGATGTAGGCGCTTTAATATCTCTTGGCCGGAGA
CTGTGCGGCATCTTGGACGATACTGTAAAGAATTCTGGCTGTCCATCAGG
TGAAGGTTGTAAGATGAATGCTTCAGGAGCAAGTTGGGTTCATGCGTGGA
TTGGCAAGGTAGGAACCATTGGGAAGCTGGGAAAAGTCGTTGGTTTACTC
ATGGCCTCTACTCAGACCGTGCCTCTAGCCGCTGTGTGGATGCTTCATCT
CGTAGCGAATGATGAAAAAGTGAAGGGTATGTTAAGGCAAGAGCTGAAGG
ATCTCGAAGTTGACACTATTAGAGACTTGGGATATGAACATCTTGACAAG
ATGAAAGTCGCAGATGCAGTTATCAAGGAAACGCTGCGCTTGTATCCACC
ATTCCCTCTCATTCAAAGGCAAGCTCGTTTTGACGATGTGCTCGCTGACG
TCAATATTTCATCCAACTCAATTGTTTATGTCGTACCATGGCTAGTTCAT
AGAAATCCAAAGTACTGGAAAAATGCTCATGAGTTCATGCCTGAAAGGTT
CTTGGAAGGAAGCAGTTCCCATGGGGATGCACCGAGCGACTGGTTATATC
TTCCATTTGGTCGCGGGTCAAGGATGTGCGCCGGTTCGAAACTTGCCATT
ACAGAATTGAAGATTCTTCTCTGCCACACTCTTTGTTCGTACGAGTGGGA
AAGCAGGCGAGAAATAATCTCTCGAGATAGTAGATTCCCAGAACTTGGTA
TGGATCCCAAAGGAATCAGGATGTCGTTCCGAAGGAGGAAGTGA

Coding sequence (CDS) from alignment at tig00000159_pilon:450300..451943+

>Gchil10527.t1 ID=Gchil10527.t1|Name=Gchil10527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00000159_pilon:450300..451943+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTACGTTCAGTATACGATGGAGGGACGCCCGCTCTGCAATCCGTTCA
ACGTACTGTTGAAGATGTTCTTCAATCTCAGAAACCCGACACCCACCAAT
CCGTATCTCCATCCATGGGGAACAATGTATCTGTACTAGTCGGCGTTGCC
GCCGTTTCAGCCGCAAGCGCCGCTGTTTACTCCTGTGCAAAGCTTCATGT
ACGAAGAAGTCGCTACTCTCACTTTGAAACCAAGCGGCCAGCACCAGGAC
CCACTCCACTTCCCTTTCTTGGAAACGTTCTACAATTGCGAACCCATTAC
TACGAAACACTATATCGCTATGTCGATCACCCAATTAGCATTTTCTGGGT
AATGACTGATCCATTTATCGTGGTTAACGATGAAGAGGCGTTGCGACGTG
TGTTGGGTGGTGCCGGTGGGGTTTATACCAAACCCAGATATTTTGGGTAT
CGTTCGAAGGCAGTTAGTAATGCCGTTCGGGTCGAAAAGAACTTGGTGGC
AAAAGAATCCATTCAGTATGATCCCAACGGGGATATTTCTCGTGCTGCTC
TTGAGTCCATGATTGTTTCGTCGTTTGGTACCATCAAGACCTCTATGATT
GGCCTTCTGCATGACCTTGAGATTGCTTCCTGTGATTATTACAACGTTAA
ATCGACTGCGGATTGCGATACTGTGAGACCAGTTAGACGGAGTATAGTTG
GACTCAATTTAAATCTATTGTTTGGTGTCTCTGGAGACCGTGGTGAGGAT
ATCGATGACCACTGCGTTTCTGAGACTATATCGTCAGCTGGATCCGAGTT
TGCAAGACGAATGGTCAATCCATTGAAGGTGCTTATTGATCTTCCCAGCA
ATGTGAAGTTCATGTGGGATGTAGGCGCTTTAATATCTCTTGGCCGGAGA
CTGTGCGGCATCTTGGACGATACTGTAAAGAATTCTGGCTGTCCATCAGG
TGAAGGTTGTAAGATGAATGCTTCAGGAGCAAGTTGGGTTCATGCGTGGA
TTGGCAAGGTAGGAACCATTGGGAAGCTGGGAAAAGTCGTTGGTTTACTC
ATGGCCTCTACTCAGACCGTGCCTCTAGCCGCTGTGTGGATGCTTCATCT
CGTAGCGAATGATGAAAAAGTGAAGGGTATGTTAAGGCAAGAGCTGAAGG
ATCTCGAAGTTGACACTATTAGAGACTTGGGATATGAACATCTTGACAAG
ATGAAAGTCGCAGATGCAGTTATCAAGGAAACGCTGCGCTTGTATCCACC
ATTCCCTCTCATTCAAAGGCAAGCTCGTTTTGACGATGTGCTCGCTGACG
TCAATATTTCATCCAACTCAATTGTTTATGTCGTACCATGGCTAGTTCAT
AGAAATCCAAAGTACTGGAAAAATGCTCATGAGTTCATGCCTGAAAGGTT
CTTGGAAGGAAGCAGTTCCCATGGGGATGCACCGAGCGACTGGTTATATC
TTCCATTTGGTCGCGGGTCAAGGATGTGCGCCGGTTCGAAACTTGCCATT
ACAGAATTGAAGATTCTTCTCTGCCACACTCTTTGTTCGTACGAGTGGGA
AAGCAGGCGAGAAATAATCTCTCGAGATAGTAGATTCCCAGAACTTGGTA
TGGATCCCAAAGGAATCAGGATGTCGTTCCGAAGGAGGAAGTGA