Gchil10526.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10526.t1
Unique NameGchil10526.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:448628..449510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S79_157V6.1
PFAMsEamA,Ribosomal_L6
Max annot lvl35493|Streptophyta
KEGG koko:K02940
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue5.78e-69
EggNOG OGsCOG0097@1|root,KOG3255@2759|Eukaryota,37IY1@33090|Viridiplantae,3GBVA@35493|Streptophyta
Description60s ribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10526Gchil10526Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 448628..449510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10526.t1Gchil10526.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 448628..449510 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10526.t1.stop1Gchil10526.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 448628..448630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10526.t1.CDS1Gchil10526.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 448628..449151 -
Gchil10526.t1.CDS2Gchil10526.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 449465..449510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10526.t1.exon1Gchil10526.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 448628..449151 -
Gchil10526.t1.exon2Gchil10526.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 449465..449510 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10526.t1.intron1Gchil10526.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 449152..449464 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10526.t1.start1Gchil10526.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 449508..449510 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10526.t1 ID=Gchil10526.t1|Name=Gchil10526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=190bp
MKAVLSTEYVDVPEGVKISLKARKVTVTGPRGTLHRSVKPAMDVRRVEDG
RIRVDVWHGSRKETAKINTICSMIENMILGVTVGFRYKLRFVYAHFPINV
TCADDKKSCEIRNFLGEKRVRRVPMKGDVVCYRSTDVKDELIVEGSDIEL
VSQCAAMVHHVCLVKRKDIRKFLDGIYVSHKGHIVQEVF*
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spliced messenger RNA

>Gchil10526.t1 ID=Gchil10526.t1|Name=Gchil10526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000159_pilon:448628..449510- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCAGTTCTCTCCACCGAGTATGTCGACGTCCCGGAAGGCGTGAA
GATATCATTGAAGGCGCGGAAAGTAACCGTAACGGGACCGCGTGGAACTC
TTCATCGGTCCGTGAAACCAGCAATGGATGTTCGTCGCGTTGAAGATGGT
CGAATTCGCGTAGATGTGTGGCATGGTTCACGAAAAGAAACGGCCAAAAT
CAATACCATCTGCTCCATGATTGAAAACATGATTCTTGGTGTCACAGTTG
GATTTCGTTACAAGCTTCGATTCGTGTACGCCCATTTTCCTATCAACGTT
ACTTGCGCTGATGATAAGAAATCTTGTGAGATTAGAAACTTTTTAGGGGA
AAAGCGTGTGCGTCGTGTTCCCATGAAGGGCGATGTTGTCTGTTACAGAT
CGACTGATGTGAAGGATGAGTTGATTGTTGAAGGCTCTGACATTGAACTC
GTTTCGCAATGTGCAGCCATGGTTCATCACGTGTGTCTTGTGAAGAGGAA
GGATATTCGTAAGTTCCTTGACGGTATCTACGTGTCCCACAAGGGTCACA
TTGTTCAAGAAGTCTTCTAA
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protein sequence of Gchil10526.t1

>Gchil10526.t1 ID=Gchil10526.t1|Name=Gchil10526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=190bp
MKAVLSTEYVDVPEGVKISLKARKVTVTGPRGTLHRSVKPAMDVRRVEDG
RIRVDVWHGSRKETAKINTICSMIENMILGVTVGFRYKLRFVYAHFPINV
TCADDKKSCEIRNFLGEKRVRRVPMKGDVVCYRSTDVKDELIVEGSDIEL
VSQCAAMVHHVCLVKRKDIRKFLDGIYVSHKGHIVQEVF*
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mRNA from alignment at tig00000159_pilon:448628..449510-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10526.t1 ID=Gchil10526.t1|Name=Gchil10526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=883bp|location=Sequence derived from alignment at tig00000159_pilon:448628..449510- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGCAGTTCTCTCCACCGAGTATGTCGACGTCCCGGAAGGCGGTAA
GTTTCGCATCTCTAATCGCACTCAGACCTAGATCTGCACTTTGCGCCATT
GTGCTTCGCCATGTTTCAGGAGGCGCGAACAAGGGCTTTATTGCCCGAGC
GTGCGTTTCTGTTGTTGTTGTTGTGGTGAAGCGCAATGGATGGATGAAAG
GCGGTGACTATCCATTACGCCTTAAAAACGCTCTTCGCTCGACATGACAA
CGCGAGATGAAATGCACTGTTGACGTGATGGAATGGCGGGAAAGAATCGA
TCTCGACATGAAACTAACTGCTTGTTCTTGTTTGGTACAACTGCGATTGG
TGCCTATAGTGAAGATATCATTGAAGGCGCGGAAAGTAACCGTAACGGGA
CCGCGTGGAACTCTTCATCGGTCCGTGAAACCAGCAATGGATGTTCGTCG
CGTTGAAGATGGTCGAATTCGCGTAGATGTGTGGCATGGTTCACGAAAAG
AAACGGCCAAAATCAATACCATCTGCTCCATGATTGAAAACATGATTCTT
GGTGTCACAGTTGGATTTCGTTACAAGCTTCGATTCGTGTACGCCCATTT
TCCTATCAACGTTACTTGCGCTGATGATAAGAAATCTTGTGAGATTAGAA
ACTTTTTAGGGGAAAAGCGTGTGCGTCGTGTTCCCATGAAGGGCGATGTT
GTCTGTTACAGATCGACTGATGTGAAGGATGAGTTGATTGTTGAAGGCTC
TGACATTGAACTCGTTTCGCAATGTGCAGCCATGGTTCATCACGTGTGTC
TTGTGAAGAGGAAGGATATTCGTAAGTTCCTTGACGGTATCTACGTGTCC
CACAAGGGTCACATTGTTCAAGAAGTCTTCTAA
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Coding sequence (CDS) from alignment at tig00000159_pilon:448628..449510-

>Gchil10526.t1 ID=Gchil10526.t1|Name=Gchil10526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000159_pilon:448628..449510- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGCAGTTCTCTCCACCGAGTATGTCGACGTCCCGGAAGGCGTGAA
GATATCATTGAAGGCGCGGAAAGTAACCGTAACGGGACCGCGTGGAACTC
TTCATCGGTCCGTGAAACCAGCAATGGATGTTCGTCGCGTTGAAGATGGT
CGAATTCGCGTAGATGTGTGGCATGGTTCACGAAAAGAAACGGCCAAAAT
CAATACCATCTGCTCCATGATTGAAAACATGATTCTTGGTGTCACAGTTG
GATTTCGTTACAAGCTTCGATTCGTGTACGCCCATTTTCCTATCAACGTT
ACTTGCGCTGATGATAAGAAATCTTGTGAGATTAGAAACTTTTTAGGGGA
AAAGCGTGTGCGTCGTGTTCCCATGAAGGGCGATGTTGTCTGTTACAGAT
CGACTGATGTGAAGGATGAGTTGATTGTTGAAGGCTCTGACATTGAACTC
GTTTCGCAATGTGCAGCCATGGTTCATCACGTGTGTCTTGTGAAGAGGAA
GGATATTCGTAAGTTCCTTGACGGTATCTACGTGTCCCACAAGGGTCACA
TTGTTCAAGAAGTCTTCTAA
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