Gchil10525.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10525.t1
Unique NameGchil10525.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:447823..448351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10525Gchil10525Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 447823..448351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10525.t1Gchil10525.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 447823..448351 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10525.t1.start1Gchil10525.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 447823..447825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10525.t1.CDS1Gchil10525.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 447823..448159 +
Gchil10525.t1.CDS2Gchil10525.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 448239..448351 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10525.t1.exon1Gchil10525.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 447823..448159 +
Gchil10525.t1.exon2Gchil10525.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 448239..448351 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10525.t1.intron1Gchil10525.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 448160..448238 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10525.t1.stop1Gchil10525.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 448349..448351 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10525.t1 ID=Gchil10525.t1|Name=Gchil10525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=150bp
MCLAQSPRKPPPTSRRLFLRGVIATSLLTVLPRAPQASALPTKHWAPEDL
CTHCSGCGKQACALCAASGVLTIDDSLVVQDNVCPNCQGAGSVRCPACIG
LGLANTNGILRRAARDGSLRMLRDGSYEIMDCSAFPSCDIYGAERRSHM*
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spliced messenger RNA

>Gchil10525.t1 ID=Gchil10525.t1|Name=Gchil10525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000159_pilon:447823..448351+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCTGGCTCAATCTCCCAGAAAACCACCACCAACCTCCCGTCGTCT
GTTCCTCCGTGGCGTCATCGCAACCTCGCTCCTTACCGTGCTCCCGCGTG
CTCCCCAAGCCTCCGCGCTGCCAACAAAACACTGGGCTCCCGAGGACCTT
TGTACCCACTGCAGCGGCTGCGGAAAGCAAGCCTGCGCTCTCTGCGCCGC
GTCTGGCGTCCTCACAATCGATGACTCTCTTGTCGTGCAGGATAATGTAT
GTCCCAATTGTCAGGGAGCTGGTTCAGTGCGATGTCCAGCATGTATCGGG
CTTGGACTTGCAAACACCAATGGCATTCTGCGTCGCGCTGCCAGGGATGG
TTCTCTACGCATGCTCCGTGATGGAAGTTACGAGATTATGGACTGTTCGG
CTTTTCCTTCATGTGACATTTATGGGGCGGAACGCCGTAGTCACATGTAG
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protein sequence of Gchil10525.t1

>Gchil10525.t1 ID=Gchil10525.t1|Name=Gchil10525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=150bp
MCLAQSPRKPPPTSRRLFLRGVIATSLLTVLPRAPQASALPTKHWAPEDL
CTHCSGCGKQACALCAASGVLTIDDSLVVQDNVCPNCQGAGSVRCPACIG
LGLANTNGILRRAARDGSLRMLRDGSYEIMDCSAFPSCDIYGAERRSHM*
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mRNA from alignment at tig00000159_pilon:447823..448351+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10525.t1 ID=Gchil10525.t1|Name=Gchil10525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=529bp|location=Sequence derived from alignment at tig00000159_pilon:447823..448351+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGTCTGGCTCAATCTCCCAGAAAACCACCACCAACCTCCCGTCGTCT
GTTCCTCCGTGGCGTCATCGCAACCTCGCTCCTTACCGTGCTCCCGCGTG
CTCCCCAAGCCTCCGCGCTGCCAACAAAACACTGGGCTCCCGAGGACCTT
TGTACCCACTGCAGCGGCTGCGGAAAGCAAGCCTGCGCTCTCTGCGCCGC
GTCTGGCGTCCTCACAATCGATGACTCTCTTGTCGTGCAGGATAATGTAT
GTCCCAATTGTCAGGGAGCTGGTTCAGTGCGATGTCCAGCATGTATCGGG
CTTGGACTTGCAAACACCAATGGCATTCTGCGTCGCGGTAAGTGACATCC
TTTTCATTTCGACGCCCCAAGTGTCAAAAACTTACCTTGTACTAAACAAT
GCACCACTCATCGCAGCTGCCAGGGATGGTTCTCTACGCATGCTCCGTGA
TGGAAGTTACGAGATTATGGACTGTTCGGCTTTTCCTTCATGTGACATTT
ATGGGGCGGAACGCCGTAGTCACATGTAG
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Coding sequence (CDS) from alignment at tig00000159_pilon:447823..448351+

>Gchil10525.t1 ID=Gchil10525.t1|Name=Gchil10525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=450bp|location=Sequence derived from alignment at tig00000159_pilon:447823..448351+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGTCTGGCTCAATCTCCCAGAAAACCACCACCAACCTCCCGTCGTCT
GTTCCTCCGTGGCGTCATCGCAACCTCGCTCCTTACCGTGCTCCCGCGTG
CTCCCCAAGCCTCCGCGCTGCCAACAAAACACTGGGCTCCCGAGGACCTT
TGTACCCACTGCAGCGGCTGCGGAAAGCAAGCCTGCGCTCTCTGCGCCGC
GTCTGGCGTCCTCACAATCGATGACTCTCTTGTCGTGCAGGATAATGTAT
GTCCCAATTGTCAGGGAGCTGGTTCAGTGCGATGTCCAGCATGTATCGGG
CTTGGACTTGCAAACACCAATGGCATTCTGCGTCGCGCTGCCAGGGATGG
TTCTCTACGCATGCTCCGTGATGGAAGTTACGAGATTATGGACTGTTCGG
CTTTTCCTTCATGTGACATTTATGGGGCGGAACGCCGTAGTCACATGTAG
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