Gchil10524.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10524.t1
Unique NameGchil10524.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:446551..447474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LCM9
PFAMsSTELLO
Max annot lvl2759|Eukaryota
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
Evalue2.43e-11
EggNOG OGs28KU8@1|root,2QTAG@2759|Eukaryota
Descriptionplant-type cell wall cellulose biosynthetic process
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10524Gchil10524Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 446551..447474 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10524.t1.stop1Gchil10524.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 446551..446553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10524.t1.CDS1Gchil10524.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 446551..447474 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10524.t1.exon1Gchil10524.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 446551..447474 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10524.t1.start1Gchil10524.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 447472..447474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10524.t1Gchil10524.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 446551..447474 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10524.t1 ID=Gchil10524.t1|Name=Gchil10524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=308bp
MTNARTVDHVRLFVALGSAPANARLRAAARASWLTWLPRDGSVRYRFFSD
APPSFGVGHASRASVWTALMREVRVNRDLVLQPLPSGYGDNEHNVYGSRG
LFQFRWALTRFPRLEYFLRVDDDSFLCVHKLLYEMGNVPRRQFFWGKFWC
KQGRNRADENFMLFSSDVVQLLASEHVGGLLPFDEHVTLGWNFGYWSWVL
NLTIFDDQRRIDAQQSYLTQYMHDERLAPNSSHDFCERFIFAHHVGERAM
SAAFRNARTHVMYELPQLFGPERTCASSQRSFIPNRHSHKLPHVKISRLA
AADMHDN*
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spliced messenger RNA

>Gchil10524.t1 ID=Gchil10524.t1|Name=Gchil10524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000159_pilon:446551..447474- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAACGCGCGCACGGTGGACCACGTGCGGCTGTTCGTGGCGCTCGG
TTCGGCGCCGGCCAACGCGCGACTACGCGCCGCTGCGCGTGCGTCCTGGC
TCACTTGGTTGCCGCGCGACGGCTCCGTGCGCTACCGCTTCTTCTCCGAT
GCTCCGCCTTCCTTTGGCGTTGGCCACGCGTCGCGCGCCTCCGTGTGGAC
CGCGCTCATGCGCGAGGTGCGCGTGAATCGCGACTTGGTGCTGCAGCCGT
TGCCCTCTGGCTACGGCGACAACGAACATAACGTGTACGGCAGTCGCGGT
CTGTTTCAGTTTCGCTGGGCCTTGACGCGCTTTCCGCGCCTCGAGTACTT
TTTGCGCGTGGACGATGATAGCTTTTTGTGCGTGCACAAGTTGCTGTATG
AGATGGGCAACGTGCCGCGACGGCAGTTCTTCTGGGGCAAGTTTTGGTGC
AAACAGGGAAGAAACCGTGCCGATGAGAACTTTATGTTGTTTTCAAGCGA
CGTGGTGCAGCTGCTGGCCAGCGAGCATGTGGGTGGACTGCTGCCGTTCG
ACGAGCACGTCACGCTGGGCTGGAACTTTGGCTACTGGTCGTGGGTGCTG
AATCTGACCATCTTTGACGACCAGCGGCGCATCGACGCACAACAATCCTA
CCTCACACAATACATGCACGACGAACGCCTCGCGCCAAACTCTTCGCACG
ACTTTTGTGAGCGCTTTATCTTTGCGCACCACGTGGGCGAGCGTGCTATG
AGCGCCGCGTTCCGCAACGCCAGGACGCACGTTATGTATGAGCTTCCACA
GCTCTTCGGGCCGGAGCGCACGTGTGCGAGTTCGCAGCGCAGCTTCATTC
CGAATCGGCACTCGCACAAACTGCCGCACGTCAAGATTAGCAGACTGGCG
GCCGCTGACATGCATGACAACTAA
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protein sequence of Gchil10524.t1

>Gchil10524.t1 ID=Gchil10524.t1|Name=Gchil10524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=308bp
MTNARTVDHVRLFVALGSAPANARLRAAARASWLTWLPRDGSVRYRFFSD
APPSFGVGHASRASVWTALMREVRVNRDLVLQPLPSGYGDNEHNVYGSRG
LFQFRWALTRFPRLEYFLRVDDDSFLCVHKLLYEMGNVPRRQFFWGKFWC
KQGRNRADENFMLFSSDVVQLLASEHVGGLLPFDEHVTLGWNFGYWSWVL
NLTIFDDQRRIDAQQSYLTQYMHDERLAPNSSHDFCERFIFAHHVGERAM
SAAFRNARTHVMYELPQLFGPERTCASSQRSFIPNRHSHKLPHVKISRLA
AADMHDN*
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mRNA from alignment at tig00000159_pilon:446551..447474-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10524.t1 ID=Gchil10524.t1|Name=Gchil10524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000159_pilon:446551..447474- (Gracilaria chilensis NLEC103_M9 male)
ATGACAAACGCGCGCACGGTGGACCACGTGCGGCTGTTCGTGGCGCTCGG
TTCGGCGCCGGCCAACGCGCGACTACGCGCCGCTGCGCGTGCGTCCTGGC
TCACTTGGTTGCCGCGCGACGGCTCCGTGCGCTACCGCTTCTTCTCCGAT
GCTCCGCCTTCCTTTGGCGTTGGCCACGCGTCGCGCGCCTCCGTGTGGAC
CGCGCTCATGCGCGAGGTGCGCGTGAATCGCGACTTGGTGCTGCAGCCGT
TGCCCTCTGGCTACGGCGACAACGAACATAACGTGTACGGCAGTCGCGGT
CTGTTTCAGTTTCGCTGGGCCTTGACGCGCTTTCCGCGCCTCGAGTACTT
TTTGCGCGTGGACGATGATAGCTTTTTGTGCGTGCACAAGTTGCTGTATG
AGATGGGCAACGTGCCGCGACGGCAGTTCTTCTGGGGCAAGTTTTGGTGC
AAACAGGGAAGAAACCGTGCCGATGAGAACTTTATGTTGTTTTCAAGCGA
CGTGGTGCAGCTGCTGGCCAGCGAGCATGTGGGTGGACTGCTGCCGTTCG
ACGAGCACGTCACGCTGGGCTGGAACTTTGGCTACTGGTCGTGGGTGCTG
AATCTGACCATCTTTGACGACCAGCGGCGCATCGACGCACAACAATCCTA
CCTCACACAATACATGCACGACGAACGCCTCGCGCCAAACTCTTCGCACG
ACTTTTGTGAGCGCTTTATCTTTGCGCACCACGTGGGCGAGCGTGCTATG
AGCGCCGCGTTCCGCAACGCCAGGACGCACGTTATGTATGAGCTTCCACA
GCTCTTCGGGCCGGAGCGCACGTGTGCGAGTTCGCAGCGCAGCTTCATTC
CGAATCGGCACTCGCACAAACTGCCGCACGTCAAGATTAGCAGACTGGCG
GCCGCTGACATGCATGACAACTAA
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Coding sequence (CDS) from alignment at tig00000159_pilon:446551..447474-

>Gchil10524.t1 ID=Gchil10524.t1|Name=Gchil10524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=924bp|location=Sequence derived from alignment at tig00000159_pilon:446551..447474- (Gracilaria chilensis NLEC103_M9 male)
ATGACAAACGCGCGCACGGTGGACCACGTGCGGCTGTTCGTGGCGCTCGG
TTCGGCGCCGGCCAACGCGCGACTACGCGCCGCTGCGCGTGCGTCCTGGC
TCACTTGGTTGCCGCGCGACGGCTCCGTGCGCTACCGCTTCTTCTCCGAT
GCTCCGCCTTCCTTTGGCGTTGGCCACGCGTCGCGCGCCTCCGTGTGGAC
CGCGCTCATGCGCGAGGTGCGCGTGAATCGCGACTTGGTGCTGCAGCCGT
TGCCCTCTGGCTACGGCGACAACGAACATAACGTGTACGGCAGTCGCGGT
CTGTTTCAGTTTCGCTGGGCCTTGACGCGCTTTCCGCGCCTCGAGTACTT
TTTGCGCGTGGACGATGATAGCTTTTTGTGCGTGCACAAGTTGCTGTATG
AGATGGGCAACGTGCCGCGACGGCAGTTCTTCTGGGGCAAGTTTTGGTGC
AAACAGGGAAGAAACCGTGCCGATGAGAACTTTATGTTGTTTTCAAGCGA
CGTGGTGCAGCTGCTGGCCAGCGAGCATGTGGGTGGACTGCTGCCGTTCG
ACGAGCACGTCACGCTGGGCTGGAACTTTGGCTACTGGTCGTGGGTGCTG
AATCTGACCATCTTTGACGACCAGCGGCGCATCGACGCACAACAATCCTA
CCTCACACAATACATGCACGACGAACGCCTCGCGCCAAACTCTTCGCACG
ACTTTTGTGAGCGCTTTATCTTTGCGCACCACGTGGGCGAGCGTGCTATG
AGCGCCGCGTTCCGCAACGCCAGGACGCACGTTATGTATGAGCTTCCACA
GCTCTTCGGGCCGGAGCGCACGTGTGCGAGTTCGCAGCGCAGCTTCATTC
CGAATCGGCACTCGCACAAACTGCCGCACGTCAAGATTAGCAGACTGGCG
GCCGCTGACATGCATGACAACTAA
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