Gchil10523.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10523.t1
Unique NameGchil10523.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:444911..446195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1214101.BN159_6424
Max annot lvl201174|Actinobacteria
Evalue1.22e-40
EggNOG OGsCOG2357@1|root,COG2357@2|Bacteria,2I30R@201174|Actinobacteria
DescriptionRelA SpoT domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10523Gchil10523Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 444911..446195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10523.t1Gchil10523.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 444911..446195 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10523.t1.start1Gchil10523.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 444911..444913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10523.t1.CDS1Gchil10523.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 444911..445721 +
Gchil10523.t1.CDS2Gchil10523.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 445831..445898 +
Gchil10523.t1.CDS3Gchil10523.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 446016..446195 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10523.t1.exon1Gchil10523.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 444911..445721 +
Gchil10523.t1.exon2Gchil10523.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 445831..445898 +
Gchil10523.t1.exon3Gchil10523.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 446016..446195 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10523.t1.intron1Gchil10523.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 445722..445830 +
Gchil10523.t1.intron2Gchil10523.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 445899..446015 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10523.t1.stop1Gchil10523.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 446193..446195 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10523.t1 ID=Gchil10523.t1|Name=Gchil10523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=353bp
MIASTRPPSVHRMPLLLPLLLLLLVLQLVVVPRPAAAASAVKGVAFSTGH
DTWGYRQWYAHRSLSDLLSTGANYVQISVYTKMTSLRALTADQQTDDESI
RYIIRAIKARGAKVFLKPVVEVSGHTWRGYLDGRPVWFEKVYRPFIIKMA
RIAQEERVDLFSLGSEYRNAEKQLKQWLITIDAVKDVYTGRLTYIANHDS
YRRVNFWHRMDYISISAYFKFRGGVRGPSPTMNQTKLLWKNVADDINRWR
MWSKFGHKQVLIAEVGAQSKGDGIVYRVPWDWTITAPVDFNEQVKMYEGI
CSAFMPQKWVAGVVFWNWELQPHAGTYQPGIAGYTPQNKPALDVMRRYFK
SA*
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spliced messenger RNA

>Gchil10523.t1 ID=Gchil10523.t1|Name=Gchil10523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000159_pilon:444911..446195+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCATCCACCCGCCCCCCCTCCGTCCATCgcatgccgctgctgct
gccgttgctgctgctgctgcttgtgctgcagctgGTCGTCGTGCCACGCC
CCGCCGCAGCCGCCTCAGCGGTCAAGGGCGTAGCATTCTCCACCGGCCAC
GACACCTGGGGTTACCGCCAGTGGTATGCTCACCGGTCGCTGTCCGATCT
GCTTTCCACGGGTGCCAACTACGTACAAATTTCCGTGTACACCAAGATGA
CTTCATTACGCGCTCTCACCGCCGACCAGCAGACTGACGACGAGTCCATC
CGCTACATCATCCGCGCCATCAAGGCGCGCGGAGCCAAGGTATTCCTCAA
ACCCGTGGTTGAAGTGTCCGGCCACACATGGCGCGGCTATCTGGATGGGC
GCCCGGTATGGTTTGAGAAGGTGTACCGCCCCTTCATCATCAAGATGGCG
CGCATTGCGCAGGAGGAGCGCGTTGATCTCTTCTCGTTGGGCAGTGAGTA
CCGAAACGCTGAGAAGCAGCTCAAACAATGGCTTATCACCATCGACGCTG
TCAAGGACGTGTACACCGGCCGTCTCACGTACATTGCCAACCACGACTCG
TACCGTCGCGTCAACTTTTGGCATCGCATGGATTACATCTCCATCTCCGC
TTATTTCAAGTTCAGGGGCGGTGTGCGCGGCCCGTCGCCCACCATGAACC
AGACCAAGCTGTTGTGGAAAAATGTGGCAGACGACATCAATCGGTGGCGT
ATGTGGAGCAAATTTGGCCACAAGCAGGTGCTCATTGCCGAGGTGGGCGC
CCAAAGCAAAGGTGACGGAATCGTGTACCGCGTGCCGTGGGATTGGACAA
TAACGGCGCCGGTAGACTTCAACGAACAGGTGAAGATGTATGAGGGCATT
TGCTCAGCGTTCATGCCGCAGAAGTGGGTCGCAGGCGTCGTGTTCTGGAA
CTGGGAGCTACAGCCGCATGCCGGCACGTACCAGCCAGGCATTGCTGGCT
ACACTCCGCAGAACAAACCCGCACTCGACGTCATGCGGCGCTACTTCAAA
TCCGCGTAG
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protein sequence of Gchil10523.t1

>Gchil10523.t1 ID=Gchil10523.t1|Name=Gchil10523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=353bp
MIASTRPPSVHRMPLLLPLLLLLLVLQLVVVPRPAAAASAVKGVAFSTGH
DTWGYRQWYAHRSLSDLLSTGANYVQISVYTKMTSLRALTADQQTDDESI
RYIIRAIKARGAKVFLKPVVEVSGHTWRGYLDGRPVWFEKVYRPFIIKMA
RIAQEERVDLFSLGSEYRNAEKQLKQWLITIDAVKDVYTGRLTYIANHDS
YRRVNFWHRMDYISISAYFKFRGGVRGPSPTMNQTKLLWKNVADDINRWR
MWSKFGHKQVLIAEVGAQSKGDGIVYRVPWDWTITAPVDFNEQVKMYEGI
CSAFMPQKWVAGVVFWNWELQPHAGTYQPGIAGYTPQNKPALDVMRRYFK
SA*
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mRNA from alignment at tig00000159_pilon:444911..446195+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10523.t1 ID=Gchil10523.t1|Name=Gchil10523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1285bp|location=Sequence derived from alignment at tig00000159_pilon:444911..446195+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCATCCACCCGCCCCCCCTCCGTCCATCgcatgccgctgctgct
gccgttgctgctgctgctgcttgtgctgcagctgGTCGTCGTGCCACGCC
CCGCCGCAGCCGCCTCAGCGGTCAAGGGCGTAGCATTCTCCACCGGCCAC
GACACCTGGGGTTACCGCCAGTGGTATGCTCACCGGTCGCTGTCCGATCT
GCTTTCCACGGGTGCCAACTACGTACAAATTTCCGTGTACACCAAGATGA
CTTCATTACGCGCTCTCACCGCCGACCAGCAGACTGACGACGAGTCCATC
CGCTACATCATCCGCGCCATCAAGGCGCGCGGAGCCAAGGTATTCCTCAA
ACCCGTGGTTGAAGTGTCCGGCCACACATGGCGCGGCTATCTGGATGGGC
GCCCGGTATGGTTTGAGAAGGTGTACCGCCCCTTCATCATCAAGATGGCG
CGCATTGCGCAGGAGGAGCGCGTTGATCTCTTCTCGTTGGGCAGTGAGTA
CCGAAACGCTGAGAAGCAGCTCAAACAATGGCTTATCACCATCGACGCTG
TCAAGGACGTGTACACCGGCCGTCTCACGTACATTGCCAACCACGACTCG
TACCGTCGCGTCAACTTTTGGCATCGCATGGATTACATCTCCATCTCCGC
TTATTTCAAGTTCAGGGGCGGTGTGCGCGGCCCGTCGCCCACCATGAACC
AGACCAAGCTGTTGTGGAAAAATGTGGCAGACGACATCAATCGGTGGCGT
ATGTGGAGCAAATTTGGCCACAAGCAGGTGCTCATTGCCGAGGTGGGCGC
CCAAAGCAAAGGTAAGTTGTTTTTGTTTTTACTGTGCCCCGTCCCACATT
TACCTTCTCGACCCGCCTTTCTCACACTTGCATCACCCACCCCTCCATCA
CCCCTCCATCGCGCATGCAGGTGACGGAATCGTGTACCGCGTGCCGTGGG
ATTGGACAATAACGGCGCCGGTAGACTTCAACGAACAGgtatgtgtgtgt
gtgtgtgtgtgtgaatgttgtTTTGAGCCTCGCCACCCCGCCGCGTCACA
TCATCTCTGTCATGCGCTCACACTTGTACTGTCTTTTTGTTATTGCGCGC
CGCAGGTGAAGATGTATGAGGGCATTTGCTCAGCGTTCATGCCGCAGAAG
TGGGTCGCAGGCGTCGTGTTCTGGAACTGGGAGCTACAGCCGCATGCCGG
CACGTACCAGCCAGGCATTGCTGGCTACACTCCGCAGAACAAACCCGCAC
TCGACGTCATGCGGCGCTACTTCAAATCCGCGTAG
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Coding sequence (CDS) from alignment at tig00000159_pilon:444911..446195+

>Gchil10523.t1 ID=Gchil10523.t1|Name=Gchil10523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000159_pilon:444911..446195+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCATCCACCCGCCCCCCCTCCGTCCATCgcatgccgctgctgct
gccgttgctgctgctgctgcttgtgctgcagctgGTCGTCGTGCCACGCC
CCGCCGCAGCCGCCTCAGCGGTCAAGGGCGTAGCATTCTCCACCGGCCAC
GACACCTGGGGTTACCGCCAGTGGTATGCTCACCGGTCGCTGTCCGATCT
GCTTTCCACGGGTGCCAACTACGTACAAATTTCCGTGTACACCAAGATGA
CTTCATTACGCGCTCTCACCGCCGACCAGCAGACTGACGACGAGTCCATC
CGCTACATCATCCGCGCCATCAAGGCGCGCGGAGCCAAGGTATTCCTCAA
ACCCGTGGTTGAAGTGTCCGGCCACACATGGCGCGGCTATCTGGATGGGC
GCCCGGTATGGTTTGAGAAGGTGTACCGCCCCTTCATCATCAAGATGGCG
CGCATTGCGCAGGAGGAGCGCGTTGATCTCTTCTCGTTGGGCAGTGAGTA
CCGAAACGCTGAGAAGCAGCTCAAACAATGGCTTATCACCATCGACGCTG
TCAAGGACGTGTACACCGGCCGTCTCACGTACATTGCCAACCACGACTCG
TACCGTCGCGTCAACTTTTGGCATCGCATGGATTACATCTCCATCTCCGC
TTATTTCAAGTTCAGGGGCGGTGTGCGCGGCCCGTCGCCCACCATGAACC
AGACCAAGCTGTTGTGGAAAAATGTGGCAGACGACATCAATCGGTGGCGT
ATGTGGAGCAAATTTGGCCACAAGCAGGTGCTCATTGCCGAGGTGGGCGC
CCAAAGCAAAGGTGACGGAATCGTGTACCGCGTGCCGTGGGATTGGACAA
TAACGGCGCCGGTAGACTTCAACGAACAGGTGAAGATGTATGAGGGCATT
TGCTCAGCGTTCATGCCGCAGAAGTGGGTCGCAGGCGTCGTGTTCTGGAA
CTGGGAGCTACAGCCGCATGCCGGCACGTACCAGCCAGGCATTGCTGGCT
ACACTCCGCAGAACAAACCCGCACTCGACGTCATGCGGCGCTACTTCAAA
TCCGCGTAG
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