Gchil10522.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10522.t1
Unique NameGchil10522.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:442611..443783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705129.1
PFAMsAminotran_5
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00036
KEGG koko:K00831
KEGG ReactionR04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
Evalue1.36e-188
EggNOG OGsCOG1932@1|root,2QS23@2759|Eukaryota
EC2.6.1.52
DescriptionO-phospho-L-serine:2-oxoglutarate aminotransferase activity
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10522Gchil10522Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 442611..443783 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10522.t1.stop1Gchil10522.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 442611..442613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10522.t1.CDS1Gchil10522.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 442611..443783 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10522.t1.exon1Gchil10522.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 442611..443783 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10522.t1.start1Gchil10522.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 443781..443783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10522.t1Gchil10522.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 442611..443783 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10522.t1 ID=Gchil10522.t1|Name=Gchil10522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=391bp
MVVAAPKPRTKPQSPCFSSGPCKKRPGYHIADALADAPLGRSHRSKLGKA
KLQEAIALTKSVLRIPHDYRVAIVPASDTGAVEMAMWSMLGPLPVDVCYW
ESFGKGWLTDAVSHLQLNNVTQFTADEYGLLPDLSAVDKHHDVVFTFNGT
TSGVRVPSSLDFIADDRTGLSICDATSAVFAMHVPWQKVDVLTYSWQKVL
GGEAAHGMLILSPRAVQRLESYVPPRPLPKIFRMTKKGKLDEALFEGNVI
NTVSMMCVEDYLDALKWSQRVGGLDALIERSMSNLRVIEQFVKRNEWAHF
LAKHHAHRSNTSVCLTLDLPKTQVKEMERMLADEGVAFDINSYRDAPPGL
RIWCGATVDAPDVHALVTWIEWAYGVLSDANGATATSLSA*
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spliced messenger RNA

>Gchil10522.t1 ID=Gchil10522.t1|Name=Gchil10522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000159_pilon:442611..443783- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTTGCCGCGCCCAAGCCGCGTACAAAGCCGCAGTCGCCGTGCTT
TTCGTCCGGCCCGTGTAAGAAGCGCCCCGGTTATCATATCGCCGACGCGC
TAGCCGATGCGCCGCTCGGTCGATCGCATCGGAGCAAGCTGGGAAAGGCC
AAGCTGCAAGAAGCTATCGCCCTCACAAAGTCCGTTTTACGTATCCCGCA
TGATTACCGCGTGGCCATCGTGCCGGCCAGCGACACGGGCGCTGTGGAGA
TGGCCATGTGGAGCATGCTGGGCCCCCTCCCGGTCGACGTGTGCTATTGG
GAGAGTTTTGGAAAGGGCTGGCTCACCGACGCTGTGTCGCATCTCCAGCT
CAACAACGTGACGCAGTTCACCGCCGACGAGTACGGTTTGCTGCCGGATC
TGTCCGCCGTGGACAAGCACCATGATGTTGTGTTCACGTTCAACGGCACC
ACGTCCGGTGTGCGCGTGCCGTCTTCGCTCGATTTTATTGCCGACGATCG
CACCGGCCTCAGCATTTGTGACGCCACCTCGGCCGTGTTCGCCATGCACG
TGCCGTGGCAAAAAGTGGACGTGCTCACGTACTCGTGGCAAAAAGTGCTG
GGCGGCGAAGCCGCTCACGGAATGCTCATTCTGTCGCCACGTGCCGTCCA
GCGTTTGGAGAGCTATGTACCGCCACGCCCGCTGCCCAAGATCTTCCGCA
TGACCAAAAAGGGCAAGCTGGACGAGGCGCTCTTCGAGGGCAACGTCATC
AACACCGTGTCCATGATGTGCGTGGAAGACTACTTGGATGCGCTCAAGTG
GAGCCAGCGTGTTGGCGGCTTGGACGCGCTCATTGAGCGCTCCATGAGTA
ATCTACGCGTGATTGAGCAATTTGTGAAGCGCAACGAGTGGGCGCACTTT
CTGGCCAAGCACCACGCGCACCGCTCTAACACGTCGGTGTGCCTCACGCT
GGACTTGCCCAAGACGCAGGTCAAGGAGATGGAGCGCATGCTGGCCGACG
AGGGCGTCGCTTTTGACATCAACTCGTATCGCGACGCGCCGCCGGGCTTG
CGCATTTGGTGCGGAGCCACCGTGGACGCGCCCGACGTGCACGCCCTCGT
CACGTGGATCGAGTGGGCGTATGGCGTGCTAAGCGACGCCAATGGCGCCA
CCGCCACCTCTTTAAGCGCGTAG
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protein sequence of Gchil10522.t1

>Gchil10522.t1 ID=Gchil10522.t1|Name=Gchil10522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=391bp
MVVAAPKPRTKPQSPCFSSGPCKKRPGYHIADALADAPLGRSHRSKLGKA
KLQEAIALTKSVLRIPHDYRVAIVPASDTGAVEMAMWSMLGPLPVDVCYW
ESFGKGWLTDAVSHLQLNNVTQFTADEYGLLPDLSAVDKHHDVVFTFNGT
TSGVRVPSSLDFIADDRTGLSICDATSAVFAMHVPWQKVDVLTYSWQKVL
GGEAAHGMLILSPRAVQRLESYVPPRPLPKIFRMTKKGKLDEALFEGNVI
NTVSMMCVEDYLDALKWSQRVGGLDALIERSMSNLRVIEQFVKRNEWAHF
LAKHHAHRSNTSVCLTLDLPKTQVKEMERMLADEGVAFDINSYRDAPPGL
RIWCGATVDAPDVHALVTWIEWAYGVLSDANGATATSLSA*
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mRNA from alignment at tig00000159_pilon:442611..443783-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10522.t1 ID=Gchil10522.t1|Name=Gchil10522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000159_pilon:442611..443783- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGTTGCCGCGCCCAAGCCGCGTACAAAGCCGCAGTCGCCGTGCTT
TTCGTCCGGCCCGTGTAAGAAGCGCCCCGGTTATCATATCGCCGACGCGC
TAGCCGATGCGCCGCTCGGTCGATCGCATCGGAGCAAGCTGGGAAAGGCC
AAGCTGCAAGAAGCTATCGCCCTCACAAAGTCCGTTTTACGTATCCCGCA
TGATTACCGCGTGGCCATCGTGCCGGCCAGCGACACGGGCGCTGTGGAGA
TGGCCATGTGGAGCATGCTGGGCCCCCTCCCGGTCGACGTGTGCTATTGG
GAGAGTTTTGGAAAGGGCTGGCTCACCGACGCTGTGTCGCATCTCCAGCT
CAACAACGTGACGCAGTTCACCGCCGACGAGTACGGTTTGCTGCCGGATC
TGTCCGCCGTGGACAAGCACCATGATGTTGTGTTCACGTTCAACGGCACC
ACGTCCGGTGTGCGCGTGCCGTCTTCGCTCGATTTTATTGCCGACGATCG
CACCGGCCTCAGCATTTGTGACGCCACCTCGGCCGTGTTCGCCATGCACG
TGCCGTGGCAAAAAGTGGACGTGCTCACGTACTCGTGGCAAAAAGTGCTG
GGCGGCGAAGCCGCTCACGGAATGCTCATTCTGTCGCCACGTGCCGTCCA
GCGTTTGGAGAGCTATGTACCGCCACGCCCGCTGCCCAAGATCTTCCGCA
TGACCAAAAAGGGCAAGCTGGACGAGGCGCTCTTCGAGGGCAACGTCATC
AACACCGTGTCCATGATGTGCGTGGAAGACTACTTGGATGCGCTCAAGTG
GAGCCAGCGTGTTGGCGGCTTGGACGCGCTCATTGAGCGCTCCATGAGTA
ATCTACGCGTGATTGAGCAATTTGTGAAGCGCAACGAGTGGGCGCACTTT
CTGGCCAAGCACCACGCGCACCGCTCTAACACGTCGGTGTGCCTCACGCT
GGACTTGCCCAAGACGCAGGTCAAGGAGATGGAGCGCATGCTGGCCGACG
AGGGCGTCGCTTTTGACATCAACTCGTATCGCGACGCGCCGCCGGGCTTG
CGCATTTGGTGCGGAGCCACCGTGGACGCGCCCGACGTGCACGCCCTCGT
CACGTGGATCGAGTGGGCGTATGGCGTGCTAAGCGACGCCAATGGCGCCA
CCGCCACCTCTTTAAGCGCGTAG
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Coding sequence (CDS) from alignment at tig00000159_pilon:442611..443783-

>Gchil10522.t1 ID=Gchil10522.t1|Name=Gchil10522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000159_pilon:442611..443783- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGTTGCCGCGCCCAAGCCGCGTACAAAGCCGCAGTCGCCGTGCTT
TTCGTCCGGCCCGTGTAAGAAGCGCCCCGGTTATCATATCGCCGACGCGC
TAGCCGATGCGCCGCTCGGTCGATCGCATCGGAGCAAGCTGGGAAAGGCC
AAGCTGCAAGAAGCTATCGCCCTCACAAAGTCCGTTTTACGTATCCCGCA
TGATTACCGCGTGGCCATCGTGCCGGCCAGCGACACGGGCGCTGTGGAGA
TGGCCATGTGGAGCATGCTGGGCCCCCTCCCGGTCGACGTGTGCTATTGG
GAGAGTTTTGGAAAGGGCTGGCTCACCGACGCTGTGTCGCATCTCCAGCT
CAACAACGTGACGCAGTTCACCGCCGACGAGTACGGTTTGCTGCCGGATC
TGTCCGCCGTGGACAAGCACCATGATGTTGTGTTCACGTTCAACGGCACC
ACGTCCGGTGTGCGCGTGCCGTCTTCGCTCGATTTTATTGCCGACGATCG
CACCGGCCTCAGCATTTGTGACGCCACCTCGGCCGTGTTCGCCATGCACG
TGCCGTGGCAAAAAGTGGACGTGCTCACGTACTCGTGGCAAAAAGTGCTG
GGCGGCGAAGCCGCTCACGGAATGCTCATTCTGTCGCCACGTGCCGTCCA
GCGTTTGGAGAGCTATGTACCGCCACGCCCGCTGCCCAAGATCTTCCGCA
TGACCAAAAAGGGCAAGCTGGACGAGGCGCTCTTCGAGGGCAACGTCATC
AACACCGTGTCCATGATGTGCGTGGAAGACTACTTGGATGCGCTCAAGTG
GAGCCAGCGTGTTGGCGGCTTGGACGCGCTCATTGAGCGCTCCATGAGTA
ATCTACGCGTGATTGAGCAATTTGTGAAGCGCAACGAGTGGGCGCACTTT
CTGGCCAAGCACCACGCGCACCGCTCTAACACGTCGGTGTGCCTCACGCT
GGACTTGCCCAAGACGCAGGTCAAGGAGATGGAGCGCATGCTGGCCGACG
AGGGCGTCGCTTTTGACATCAACTCGTATCGCGACGCGCCGCCGGGCTTG
CGCATTTGGTGCGGAGCCACCGTGGACGCGCCCGACGTGCACGCCCTCGT
CACGTGGATCGAGTGGGCGTATGGCGTGCTAAGCGACGCCAATGGCGCCA
CCGCCACCTCTTTAAGCGCGTAG
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