Gchil10521.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10521.t1
Unique NameGchil10521.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:440717..442246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_03752T1
Preferred nameRAD52
PFAMsRad52_Rad22
Max annot lvl4751|Fungi
KEGG koko:K10873
KEGG Pathwayko03440,map03440
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000228,GO:0000278,GO:0000280,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000730,GO:0000733,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010520,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010792,GO:0010946,GO:0010947,GO:0010948,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032502,GO:0032505,GO:0032991,GO:0032993,GO:0033043,GO:0033260,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040020,GO:0042221,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045002,GO:0045003,GO:0045005,GO:0045027,GO:0045128,GO:0045165,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090734,GO:0090735,GO:0097159,GO:0097617,GO:0110026,GO:0110027,GO:0110029,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1990426,GO:1990505,GO:1990814,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020
Evalue6.14e-37
EggNOG OGsCOG5055@1|root,KOG4141@2759|Eukaryota,395YF@33154|Opisthokonta,3NXP6@4751|Fungi
DescriptionDNA repair and recombination protein
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10521Gchil10521Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 440717..442246 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10521.t1.stop1Gchil10521.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 440717..440719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10521.t1.CDS1Gchil10521.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 440717..442246 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10521.t1.exon1Gchil10521.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 440717..442246 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10521.t1.start1Gchil10521.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 442244..442246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10521.t1Gchil10521.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 440717..442246 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10521.t1 ID=Gchil10521.t1|Name=Gchil10521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp
MNDFALVDMRVSPPDLVVKKEQNVLPQSLSPSPSPSPHGTKRKACSFGDT
PFSDQESRVIRHRLNSGLTRSDTMQRPGPGGMPITYLEGWKAIHEANQIF
GFNGWSSEIVQLHQRYVDEARGRFSVCVTATVRVTLRDGCRREDRGGGLA
ENMRSKGEAILKAEKEAVTDATKRALKNFGLRLGLSLYDRQHVREMNRPA
ARDTGGGGGAAGAGGGAPGGGGGVGGVGGVTSRALSAPSAPRFSPRQRAQ
SSSSSPAAAAAAAAYRKAQAQAQAQVQAQVQAQVQAHVHKSGAAVNRVKT
FSSREQAQAQAQAQANAFMHDKMQGARPNHNEEVRSVSEALATLEKQQRV
RACMNNMAQLNGLGAGYGAGQRGNVGASAFAAGMVDGRMGGRMGPGGGGG
VGVGCSNGMNTVNAANAVDAVNQTRVSVDGTFGGANVVSNGRAAMGVGRT
RPPSGSGGGGGGGGGGGGGGGGGPNASINFGVTIGVDSSPAPMKQSDIDA
LIAMSAFDA*
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spliced messenger RNA

>Gchil10521.t1 ID=Gchil10521.t1|Name=Gchil10521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000159_pilon:440717..442246- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGACTTTGCGCTGGTTGACATGCGCGTGTCGCCCCCCGACCTGGT
CGTCAAGAAGGAGCAAAACGTCTTGCCACAGTCGCTGTCGCCGTCGCCGT
CGCCGTCGCCGCACGGTACAAAGCGAAAGGCGTGCAGCTTCGGTGACACG
CCTTTCTCCGACCAGGAGAGCCGCGTCATTCGACATCGCCTCAACTCCGG
CCTCACGCGCAGCGACACCATGCAGCGCCCCGGGCCCGGCGGCATGCCCA
TCACGTACCTGGAAGGTTGGAAGGCCATTCACGAGGCCAACCAAATCTTC
GGCTTCAACGGCTGGTCCTCCGAAATCGTGCAGCTGCACCAGCGCTACGT
GGACGAGGCACGCGGCCGCTTCAGCGTGTGTGTCACCGCCACCGTACGCG
TCACACTGCGCGACGGCTGTCGCCGCGAGGACCGTGGCGGCGGACTCGCC
GAGAACATGCGCTCAAAGGGAGAGGCCATTCTCAAGGCGGAGAAGGAGGC
CGTGACGGATGCCACCAAACGCGCGCTCAAAAACTTTGGTCTGCGCCTCG
GGTTATCCTTGTACGACCGCCAGCACGTGCGCGAGATGAACCGCCCTGCT
GCGCGCGACACCGGCGGCGGTGGCGGAGCCGCCGGCGCGGGGGGTGGCGC
GCCTGGAGGCGGTGGTGGCGTGGGTGGCGTGGGTGGCGTCACGTCGCGCG
CGTTATCGGCGCCCAGCGCGCCGCGCTTCTCGCCGAGACAACGCGCGCAG
TCGTCGTCTTCGTCGCCTGCCGCAGCGGCTGCCGCCGCCGCGTATCGCAA
GGCGCAGGCGCAGGCACAAGCGCAAGTACAAGCGCAAGTACAAGCGCAAG
TACAAGCGCACGTGCACAAGTCAGGCGCGGCGGTAAACCGCGTCAAGACG
TTTTCAAGTCGAGAGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGAATGC
ATTTATGCATGACAAGATGCAAGGGGCACGACCGAACCACAATGAGGAGG
TGAGAAGCGTCTCGGAGGCGCTGGCCACGCTGGAGAAGCAGCAGCGCGTG
CGGGCGTGCATGAACAACATGGCACAGCTTAATGGACTGGGCGCGGGCTA
CGGGGCCGGACAACGGGGGAACGTGGGCGCGAGCGCGTTTGCGGCGGGGA
TGGTGGACGGCAGGATGGGCGGCCGCATGGGGCCCGGCGGCGGCGGCGGC
GTGGGCGTGGGGTGCTCGAATGGGATGAACACAGTGAACGCAGCGAACGC
GGTGGACGCGGTGAACCAGACGCGCGTGAGCGTGGACGGAACGTTTGGTG
GCGCCAACGTGGTGAGCAACGGGCGCGCGGCGATGGGTGTGGGGCGGACG
CGACCACCCAGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGTGGCGGTGGCGGCGGGCCAAACGCGTCCATCAACTTCGGCGTCACTA
TCGGCGTGGACAGTTCGCCGGCGCCCATGAAGCAGTCCGACATCGACGCG
CTCATCGCCATGTCCGCGTTCGACGCGTGA
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protein sequence of Gchil10521.t1

>Gchil10521.t1 ID=Gchil10521.t1|Name=Gchil10521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=510bp
MNDFALVDMRVSPPDLVVKKEQNVLPQSLSPSPSPSPHGTKRKACSFGDT
PFSDQESRVIRHRLNSGLTRSDTMQRPGPGGMPITYLEGWKAIHEANQIF
GFNGWSSEIVQLHQRYVDEARGRFSVCVTATVRVTLRDGCRREDRGGGLA
ENMRSKGEAILKAEKEAVTDATKRALKNFGLRLGLSLYDRQHVREMNRPA
ARDTGGGGGAAGAGGGAPGGGGGVGGVGGVTSRALSAPSAPRFSPRQRAQ
SSSSSPAAAAAAAAYRKAQAQAQAQVQAQVQAQVQAHVHKSGAAVNRVKT
FSSREQAQAQAQAQANAFMHDKMQGARPNHNEEVRSVSEALATLEKQQRV
RACMNNMAQLNGLGAGYGAGQRGNVGASAFAAGMVDGRMGGRMGPGGGGG
VGVGCSNGMNTVNAANAVDAVNQTRVSVDGTFGGANVVSNGRAAMGVGRT
RPPSGSGGGGGGGGGGGGGGGGGPNASINFGVTIGVDSSPAPMKQSDIDA
LIAMSAFDA*
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mRNA from alignment at tig00000159_pilon:440717..442246-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10521.t1 ID=Gchil10521.t1|Name=Gchil10521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000159_pilon:440717..442246- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGACTTTGCGCTGGTTGACATGCGCGTGTCGCCCCCCGACCTGGT
CGTCAAGAAGGAGCAAAACGTCTTGCCACAGTCGCTGTCGCCGTCGCCGT
CGCCGTCGCCGCACGGTACAAAGCGAAAGGCGTGCAGCTTCGGTGACACG
CCTTTCTCCGACCAGGAGAGCCGCGTCATTCGACATCGCCTCAACTCCGG
CCTCACGCGCAGCGACACCATGCAGCGCCCCGGGCCCGGCGGCATGCCCA
TCACGTACCTGGAAGGTTGGAAGGCCATTCACGAGGCCAACCAAATCTTC
GGCTTCAACGGCTGGTCCTCCGAAATCGTGCAGCTGCACCAGCGCTACGT
GGACGAGGCACGCGGCCGCTTCAGCGTGTGTGTCACCGCCACCGTACGCG
TCACACTGCGCGACGGCTGTCGCCGCGAGGACCGTGGCGGCGGACTCGCC
GAGAACATGCGCTCAAAGGGAGAGGCCATTCTCAAGGCGGAGAAGGAGGC
CGTGACGGATGCCACCAAACGCGCGCTCAAAAACTTTGGTCTGCGCCTCG
GGTTATCCTTGTACGACCGCCAGCACGTGCGCGAGATGAACCGCCCTGCT
GCGCGCGACACCGGCGGCGGTGGCGGAGCCGCCGGCGCGGGGGGTGGCGC
GCCTGGAGGCGGTGGTGGCGTGGGTGGCGTGGGTGGCGTCACGTCGCGCG
CGTTATCGGCGCCCAGCGCGCCGCGCTTCTCGCCGAGACAACGCGCGCAG
TCGTCGTCTTCGTCGCCTGCCGCAGCGGCTGCCGCCGCCGCGTATCGCAA
GGCGCAGGCGCAGGCACAAGCGCAAGTACAAGCGCAAGTACAAGCGCAAG
TACAAGCGCACGTGCACAAGTCAGGCGCGGCGGTAAACCGCGTCAAGACG
TTTTCAAGTCGAGAGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGAATGC
ATTTATGCATGACAAGATGCAAGGGGCACGACCGAACCACAATGAGGAGG
TGAGAAGCGTCTCGGAGGCGCTGGCCACGCTGGAGAAGCAGCAGCGCGTG
CGGGCGTGCATGAACAACATGGCACAGCTTAATGGACTGGGCGCGGGCTA
CGGGGCCGGACAACGGGGGAACGTGGGCGCGAGCGCGTTTGCGGCGGGGA
TGGTGGACGGCAGGATGGGCGGCCGCATGGGGCCCGGCGGCGGCGGCGGC
GTGGGCGTGGGGTGCTCGAATGGGATGAACACAGTGAACGCAGCGAACGC
GGTGGACGCGGTGAACCAGACGCGCGTGAGCGTGGACGGAACGTTTGGTG
GCGCCAACGTGGTGAGCAACGGGCGCGCGGCGATGGGTGTGGGGCGGACG
CGACCACCCAGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGTGGCGGTGGCGGCGGGCCAAACGCGTCCATCAACTTCGGCGTCACTA
TCGGCGTGGACAGTTCGCCGGCGCCCATGAAGCAGTCCGACATCGACGCG
CTCATCGCCATGTCCGCGTTCGACGCGTGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:440717..442246-

>Gchil10521.t1 ID=Gchil10521.t1|Name=Gchil10521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000159_pilon:440717..442246- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGACTTTGCGCTGGTTGACATGCGCGTGTCGCCCCCCGACCTGGT
CGTCAAGAAGGAGCAAAACGTCTTGCCACAGTCGCTGTCGCCGTCGCCGT
CGCCGTCGCCGCACGGTACAAAGCGAAAGGCGTGCAGCTTCGGTGACACG
CCTTTCTCCGACCAGGAGAGCCGCGTCATTCGACATCGCCTCAACTCCGG
CCTCACGCGCAGCGACACCATGCAGCGCCCCGGGCCCGGCGGCATGCCCA
TCACGTACCTGGAAGGTTGGAAGGCCATTCACGAGGCCAACCAAATCTTC
GGCTTCAACGGCTGGTCCTCCGAAATCGTGCAGCTGCACCAGCGCTACGT
GGACGAGGCACGCGGCCGCTTCAGCGTGTGTGTCACCGCCACCGTACGCG
TCACACTGCGCGACGGCTGTCGCCGCGAGGACCGTGGCGGCGGACTCGCC
GAGAACATGCGCTCAAAGGGAGAGGCCATTCTCAAGGCGGAGAAGGAGGC
CGTGACGGATGCCACCAAACGCGCGCTCAAAAACTTTGGTCTGCGCCTCG
GGTTATCCTTGTACGACCGCCAGCACGTGCGCGAGATGAACCGCCCTGCT
GCGCGCGACACCGGCGGCGGTGGCGGAGCCGCCGGCGCGGGGGGTGGCGC
GCCTGGAGGCGGTGGTGGCGTGGGTGGCGTGGGTGGCGTCACGTCGCGCG
CGTTATCGGCGCCCAGCGCGCCGCGCTTCTCGCCGAGACAACGCGCGCAG
TCGTCGTCTTCGTCGCCTGCCGCAGCGGCTGCCGCCGCCGCGTATCGCAA
GGCGCAGGCGCAGGCACAAGCGCAAGTACAAGCGCAAGTACAAGCGCAAG
TACAAGCGCACGTGCACAAGTCAGGCGCGGCGGTAAACCGCGTCAAGACG
TTTTCAAGTCGAGAGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGAATGC
ATTTATGCATGACAAGATGCAAGGGGCACGACCGAACCACAATGAGGAGG
TGAGAAGCGTCTCGGAGGCGCTGGCCACGCTGGAGAAGCAGCAGCGCGTG
CGGGCGTGCATGAACAACATGGCACAGCTTAATGGACTGGGCGCGGGCTA
CGGGGCCGGACAACGGGGGAACGTGGGCGCGAGCGCGTTTGCGGCGGGGA
TGGTGGACGGCAGGATGGGCGGCCGCATGGGGCCCGGCGGCGGCGGCGGC
GTGGGCGTGGGGTGCTCGAATGGGATGAACACAGTGAACGCAGCGAACGC
GGTGGACGCGGTGAACCAGACGCGCGTGAGCGTGGACGGAACGTTTGGTG
GCGCCAACGTGGTGAGCAACGGGCGCGCGGCGATGGGTGTGGGGCGGACG
CGACCACCCAGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGTGGCGGTGGCGGCGGGCCAAACGCGTCCATCAACTTCGGCGTCACTA
TCGGCGTGGACAGTTCGCCGGCGCCCATGAAGCAGTCCGACATCGACGCG
CTCATCGCCATGTCCGCGTTCGACGCGTGA
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