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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 130081.XP_005704453.1 |
PFAMs | Myb_DNA-binding |
Max annot lvl | 2759|Eukaryota |
Evalue | 5.78e-26 |
EggNOG OGs | 2E8WQ@1|root,2SFBB@2759|Eukaryota |
Description | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains |
COG category | B |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10520.t1 ID=Gchil10520.t1|Name=Gchil10520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=908bp MNGSVRHSKSPSPPHSSAANGFAQQSRSETVDDERHPAAKSNGSLSPVLN GVIPKSLLPPDARRGLGRDIANKKDKLGLKLASLGLALTSQALVHKQPPS AIPSLERGSIMDRSRVPMKEYQGKSALIQSTAPFPVATDDSSTTLSKDRQ VLSTAPKSTASRMKPEPFIVKDEQNNTGADDKRQSHIHSITEKQRELLAS PVPAELGEASEHPVTNTGVEKANAARARKEHRLSQNEDKTMPTKGQSTAP PVIPSFSTAAPALSMTRSSPRVRKRHSVNDTLLSIKTLIKDTPSFHLPVP PTAPTVSGAAGSSKELTAQIHEVEAKIISLERELGNIRNKAVKAQQMSRS PSKKKKGGPRLHMDAESESKKRYAALAQKILESAERIPITKRPKPSPVPM HAAFRLLLTQNRTKAAAAHAKCRCLHSDSEFGLTPSLSSSKLALSKVSEE VLRKVAHELKRRRHTALERRRKLAREYSIARETWARRLKSARDKRSREKR EAIRERDRCILLSTKGSSALLTQRTSSGRTSTKIFPSISPNGPTNGMAGL DAQLAEIEAAGGTPGFNAIWSKTLALIPDQDFTYTPVPCTSVLVEDPLAD FLASRAVNPWRFDEKLVFLDKFLAYPKNFRKISSFLTHKSSRDCSYFYYT NKLNLGLKQLVKEYQSLKRKGTLRQHIMQVARRHTTNTVPVEKQLTKGEV DTVISGAEASIDHLGIDGRGQTYPWFTDVSVVFMKRSERVLIDFGVVDLD GIDRKSFAHALSIHGADWKAISMQMRVEGKTSTHYREYFRQNRKALEREA LLLQRLAKLPMSMRRSLGARSKSPRMSPRSSPRASPRSSSTSNDKLKLVL PLGGISLPNGSILSKPSKRRDAGGLGWDEKNCPSVRVGDNGKNEREPKHG HLANAHH* back to topspliced messenger RNA >Gchil10520.t1 ID=Gchil10520.t1|Name=Gchil10520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2724bp|location=Sequence derived from alignment at tig00000159_pilon:436018..438741- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAATGGCTCCGTCCGCCATTCCAAATCCCCTTCGCCGCCTCATTCGTC CGCTGCCAACGGCTTTGCCCAACAGAGTAGATCGGAAACAGTAGATGATG AACGCCATCCGGCTGCCAAAAGCAATGGCAGTCTATCTCCAGTTCTGAAT GGGGTCATACCGAAAAGCCTTCTGCCGCCTGACGCTCGGAGGGGGCTGGG TAGGGACATTGCAAACAAAAAAGATAAGCTGGGTCTCAAGTTGGCAAGTC TCGGATTAGCTCTGACCTCTCAAGCTCTTGTTCACAAGCAACCGCCTTCT GCTATTCCTAGTCTAGAAAGGGGTTCGATTATGGACAGGTCGCGCGTGCC TATGAAAGAGTATCAAGGAAAAAGTGCCCTGATTCAGAGCACCGCGCCAT TTCCAGTTGCGACTGACGACAGCTCCACCACCCTGTCTAAAGATAGACAA GTGCTGTCAACAGCGCCGAAATCAACAGCATCGCGAATGAAACCAGAGCC ATTCATTGTGAAGGATGAACAGAACAACACCGGTGCTGACGACAAACGCC AATCTCACATCCACAGTATAACAGAGAAGCAGCGTGAACTGCTTGCGTCG CCAGTACCAGCTGAGCTTGGGGAAGCTTCAGAACACCCGGTAACCAACAC TGGTGTCGAAAAGGCAAACGCTGCGCGAGCGCGGAAAGAGCATCGCCTTT CGCAGAACGAGGACAAGACAATGCCGACGAAGGGCCAAAGCACTGCGCCA CCTGTGATCCCCAGCTTTTCGACTGCTGCTCCTGCTCTTTCTATGACAAG GTCCTCCCCTCGAGTGCGGAAGCGCCATTCCGTGAACGATACGCTGTTGT CGATCAAAACGCTGATTAAGGACACCCCTAGCTTTCATTTGCCTGTGCCT CCGACTGCACCGACCGTGTCTGGAGCGGCTGGCTCTAGCAAAGAGCTTAC TGCACAGATTCATGAAGTTGAGGCGAAAATTATTTCGCTTGAGAGGGAGC TTGGAAACATTCGCAACAAAGCGGTTAAAGCCCAGCAAATGTCGCGCTCA CCTAGCAAAAAGAAGAAAGGCGGGCCGAGACTGCATATGGATGCGGAGTC GGAATCAAAAAAGCGGTATGCAGCGTTGGCACAAAAAATATTGGAGAGCG CAGAAAGAATACCGATCACGAAGCGGCCGAAACCCTCTCCAGTTCCTATG CATGCGGCTTTTCGACTGTTGCTCACGCAGAACCGTACAAAGGCTGCGGC GGCCCACGCAAAGTGTAGATGTCTGCATAGTGATAGTGAATTTGGGCTTA CTCCTTCACTTTCTTCGTCTAAACTGGCGCTTTCAAAGGTTTCAGAAGAA GTACTCCGAAAAGTTGCCCATGAGCTAAAGCGTCGCCGCCACACCGCCCT CGAGCGAAGACGGAAGTTAGCTCGCGAGTATTCCATTGCGAGAGAAACGT GGGCCAGGAGGCTCAAGTCTGCCCGCGACAAACGCTCGAGAGAGAAACGA GAAGCTATACGTGAACGAGATCGGTGTATACTGCTCTCGACAAAGGGCAG TTCAGCGCTGTTAACCCAAAGAACGAGTTCTGGGCGAACGAGCACCAAGA TTTTTCCTTCGATTAGTCCAAACGGGCCAACAAATGGGATGGCTGGGCTT GATGCTCAACTAGCAGAGATTGAAGCCGCTGGAGGTACTCCTGGCTTCAA TGCCATATGGTCTAAAACGCTGGCACTCATTCCCGACCAAGATTTCACCT ACACTCCGGTCCCGTGCACTTCTGTGTTAGTTGAAGATCCACTAGCGGAC TTCCTTGCCTCACGCGCCGTCAACCCTTGGCGATTTGATGAGAAACTTGT CTTTCTAGATAAGTTCCTTGCCTACCCGAAGAATTTCAGAAAGATCTCTA GTTTCCTAACCCACAAGTCCAGCAGAGACTGCAGTTACTTTTACTATACA AATAAGTTGAACTTGGGCCTCAAGCAGCTTGTGAAGGAATACCAGTCTTT GAAGAGAAAGGGTACCCTGAGACAGCACATTATGCAAGTGGCTAGGAGAC ATACAACGAACACTGTACCTGTCGAGAAGCAGCTCACTAAGGGCGAAGTA GATACAGTCATATCCGGTGCTGAGGCGAGCATTGACCACCTTGGTATTGA TGGCAGGGGACAAACGTATCCCTGGTTCACCGATGTCTCTGTTGTTTTCA TGAAGCGATCCGAGCGTGTTCTAATCGACTTTGGAGTGGTAGATCTCGAT GGAATTGACCGCAAATCATTTGCGCACGCACTTTCCATACACGGTGCCGA TTGGAAAGCAATTTCAATGCAAATGAGAGTGGAGGGGAAAACTTCAACTC ACTACCGGGAATACTTCCGCCAGAATCGAAAGGCTCTTGAACGTGAAGCT CTATTGCTTCAAAGATTGGCAAAATTGCCAATGAGTATGAGAAGATCACT GGGGGCAAGGAGTAAGTCTCCCCGCATGTCTCCCAGATCATCACCTAGAG CTTCCCCAAGATCGTCCTCCACTTCAAACGACAAGCTGAAACTTGTACTG CCCTTAGGCGGTATATCTCTACCAAACGGTTCAATTTTGTCCAAGCCGAG CAAGAGACGAGATGCGGGAGGTTTGGGCTGGGATGAGAAGAATTGCCCCT CCGTCAGAGTAGGAGACAATGGAAAGAATGAAAGAGAACCCAAGCATGGC CACCTGGCAAATGCTCACCACTGA back to topprotein sequence of Gchil10520.t1 >Gchil10520.t1 ID=Gchil10520.t1|Name=Gchil10520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=908bp
MNGSVRHSKSPSPPHSSAANGFAQQSRSETVDDERHPAAKSNGSLSPVLN GVIPKSLLPPDARRGLGRDIANKKDKLGLKLASLGLALTSQALVHKQPPS AIPSLERGSIMDRSRVPMKEYQGKSALIQSTAPFPVATDDSSTTLSKDRQ VLSTAPKSTASRMKPEPFIVKDEQNNTGADDKRQSHIHSITEKQRELLAS PVPAELGEASEHPVTNTGVEKANAARARKEHRLSQNEDKTMPTKGQSTAP PVIPSFSTAAPALSMTRSSPRVRKRHSVNDTLLSIKTLIKDTPSFHLPVP PTAPTVSGAAGSSKELTAQIHEVEAKIISLERELGNIRNKAVKAQQMSRS PSKKKKGGPRLHMDAESESKKRYAALAQKILESAERIPITKRPKPSPVPM HAAFRLLLTQNRTKAAAAHAKCRCLHSDSEFGLTPSLSSSKLALSKVSEE VLRKVAHELKRRRHTALERRRKLAREYSIARETWARRLKSARDKRSREKR EAIRERDRCILLSTKGSSALLTQRTSSGRTSTKIFPSISPNGPTNGMAGL DAQLAEIEAAGGTPGFNAIWSKTLALIPDQDFTYTPVPCTSVLVEDPLAD FLASRAVNPWRFDEKLVFLDKFLAYPKNFRKISSFLTHKSSRDCSYFYYT NKLNLGLKQLVKEYQSLKRKGTLRQHIMQVARRHTTNTVPVEKQLTKGEV DTVISGAEASIDHLGIDGRGQTYPWFTDVSVVFMKRSERVLIDFGVVDLD GIDRKSFAHALSIHGADWKAISMQMRVEGKTSTHYREYFRQNRKALEREA LLLQRLAKLPMSMRRSLGARSKSPRMSPRSSPRASPRSSSTSNDKLKLVL PLGGISLPNGSILSKPSKRRDAGGLGWDEKNCPSVRVGDNGKNEREPKHG HLANAHH* back to topmRNA from alignment at tig00000159_pilon:436018..438741- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10520.t1 ID=Gchil10520.t1|Name=Gchil10520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2724bp|location=Sequence derived from alignment at tig00000159_pilon:436018..438741- (Gracilaria chilensis NLEC103_M9 male) ATGAATGGCTCCGTCCGCCATTCCAAATCCCCTTCGCCGCCTCATTCGTC
CGCTGCCAACGGCTTTGCCCAACAGAGTAGATCGGAAACAGTAGATGATG
AACGCCATCCGGCTGCCAAAAGCAATGGCAGTCTATCTCCAGTTCTGAAT
GGGGTCATACCGAAAAGCCTTCTGCCGCCTGACGCTCGGAGGGGGCTGGG
TAGGGACATTGCAAACAAAAAAGATAAGCTGGGTCTCAAGTTGGCAAGTC
TCGGATTAGCTCTGACCTCTCAAGCTCTTGTTCACAAGCAACCGCCTTCT
GCTATTCCTAGTCTAGAAAGGGGTTCGATTATGGACAGGTCGCGCGTGCC
TATGAAAGAGTATCAAGGAAAAAGTGCCCTGATTCAGAGCACCGCGCCAT
TTCCAGTTGCGACTGACGACAGCTCCACCACCCTGTCTAAAGATAGACAA
GTGCTGTCAACAGCGCCGAAATCAACAGCATCGCGAATGAAACCAGAGCC
ATTCATTGTGAAGGATGAACAGAACAACACCGGTGCTGACGACAAACGCC
AATCTCACATCCACAGTATAACAGAGAAGCAGCGTGAACTGCTTGCGTCG
CCAGTACCAGCTGAGCTTGGGGAAGCTTCAGAACACCCGGTAACCAACAC
TGGTGTCGAAAAGGCAAACGCTGCGCGAGCGCGGAAAGAGCATCGCCTTT
CGCAGAACGAGGACAAGACAATGCCGACGAAGGGCCAAAGCACTGCGCCA
CCTGTGATCCCCAGCTTTTCGACTGCTGCTCCTGCTCTTTCTATGACAAG
GTCCTCCCCTCGAGTGCGGAAGCGCCATTCCGTGAACGATACGCTGTTGT
CGATCAAAACGCTGATTAAGGACACCCCTAGCTTTCATTTGCCTGTGCCT
CCGACTGCACCGACCGTGTCTGGAGCGGCTGGCTCTAGCAAAGAGCTTAC
TGCACAGATTCATGAAGTTGAGGCGAAAATTATTTCGCTTGAGAGGGAGC
TTGGAAACATTCGCAACAAAGCGGTTAAAGCCCAGCAAATGTCGCGCTCA
CCTAGCAAAAAGAAGAAAGGCGGGCCGAGACTGCATATGGATGCGGAGTC
GGAATCAAAAAAGCGGTATGCAGCGTTGGCACAAAAAATATTGGAGAGCG
CAGAAAGAATACCGATCACGAAGCGGCCGAAACCCTCTCCAGTTCCTATG
CATGCGGCTTTTCGACTGTTGCTCACGCAGAACCGTACAAAGGCTGCGGC
GGCCCACGCAAAGTGTAGATGTCTGCATAGTGATAGTGAATTTGGGCTTA
CTCCTTCACTTTCTTCGTCTAAACTGGCGCTTTCAAAGGTTTCAGAAGAA
GTACTCCGAAAAGTTGCCCATGAGCTAAAGCGTCGCCGCCACACCGCCCT
CGAGCGAAGACGGAAGTTAGCTCGCGAGTATTCCATTGCGAGAGAAACGT
GGGCCAGGAGGCTCAAGTCTGCCCGCGACAAACGCTCGAGAGAGAAACGA
GAAGCTATACGTGAACGAGATCGGTGTATACTGCTCTCGACAAAGGGCAG
TTCAGCGCTGTTAACCCAAAGAACGAGTTCTGGGCGAACGAGCACCAAGA
TTTTTCCTTCGATTAGTCCAAACGGGCCAACAAATGGGATGGCTGGGCTT
GATGCTCAACTAGCAGAGATTGAAGCCGCTGGAGGTACTCCTGGCTTCAA
TGCCATATGGTCTAAAACGCTGGCACTCATTCCCGACCAAGATTTCACCT
ACACTCCGGTCCCGTGCACTTCTGTGTTAGTTGAAGATCCACTAGCGGAC
TTCCTTGCCTCACGCGCCGTCAACCCTTGGCGATTTGATGAGAAACTTGT
CTTTCTAGATAAGTTCCTTGCCTACCCGAAGAATTTCAGAAAGATCTCTA
GTTTCCTAACCCACAAGTCCAGCAGAGACTGCAGTTACTTTTACTATACA
AATAAGTTGAACTTGGGCCTCAAGCAGCTTGTGAAGGAATACCAGTCTTT
GAAGAGAAAGGGTACCCTGAGACAGCACATTATGCAAGTGGCTAGGAGAC
ATACAACGAACACTGTACCTGTCGAGAAGCAGCTCACTAAGGGCGAAGTA
GATACAGTCATATCCGGTGCTGAGGCGAGCATTGACCACCTTGGTATTGA
TGGCAGGGGACAAACGTATCCCTGGTTCACCGATGTCTCTGTTGTTTTCA
TGAAGCGATCCGAGCGTGTTCTAATCGACTTTGGAGTGGTAGATCTCGAT
GGAATTGACCGCAAATCATTTGCGCACGCACTTTCCATACACGGTGCCGA
TTGGAAAGCAATTTCAATGCAAATGAGAGTGGAGGGGAAAACTTCAACTC
ACTACCGGGAATACTTCCGCCAGAATCGAAAGGCTCTTGAACGTGAAGCT
CTATTGCTTCAAAGATTGGCAAAATTGCCAATGAGTATGAGAAGATCACT
GGGGGCAAGGAGTAAGTCTCCCCGCATGTCTCCCAGATCATCACCTAGAG
CTTCCCCAAGATCGTCCTCCACTTCAAACGACAAGCTGAAACTTGTACTG
CCCTTAGGCGGTATATCTCTACCAAACGGTTCAATTTTGTCCAAGCCGAG
CAAGAGACGAGATGCGGGAGGTTTGGGCTGGGATGAGAAGAATTGCCCCT
CCGTCAGAGTAGGAGACAATGGAAAGAATGAAAGAGAACCCAAGCATGGC
CACCTGGCAAATGCTCACCACTGA back to topCoding sequence (CDS) from alignment at tig00000159_pilon:436018..438741- >Gchil10520.t1 ID=Gchil10520.t1|Name=Gchil10520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2724bp|location=Sequence derived from alignment at tig00000159_pilon:436018..438741- (Gracilaria chilensis NLEC103_M9 male) ATGAATGGCTCCGTCCGCCATTCCAAATCCCCTTCGCCGCCTCATTCGTC CGCTGCCAACGGCTTTGCCCAACAGAGTAGATCGGAAACAGTAGATGATG AACGCCATCCGGCTGCCAAAAGCAATGGCAGTCTATCTCCAGTTCTGAAT GGGGTCATACCGAAAAGCCTTCTGCCGCCTGACGCTCGGAGGGGGCTGGG TAGGGACATTGCAAACAAAAAAGATAAGCTGGGTCTCAAGTTGGCAAGTC TCGGATTAGCTCTGACCTCTCAAGCTCTTGTTCACAAGCAACCGCCTTCT GCTATTCCTAGTCTAGAAAGGGGTTCGATTATGGACAGGTCGCGCGTGCC TATGAAAGAGTATCAAGGAAAAAGTGCCCTGATTCAGAGCACCGCGCCAT TTCCAGTTGCGACTGACGACAGCTCCACCACCCTGTCTAAAGATAGACAA GTGCTGTCAACAGCGCCGAAATCAACAGCATCGCGAATGAAACCAGAGCC ATTCATTGTGAAGGATGAACAGAACAACACCGGTGCTGACGACAAACGCC AATCTCACATCCACAGTATAACAGAGAAGCAGCGTGAACTGCTTGCGTCG CCAGTACCAGCTGAGCTTGGGGAAGCTTCAGAACACCCGGTAACCAACAC TGGTGTCGAAAAGGCAAACGCTGCGCGAGCGCGGAAAGAGCATCGCCTTT CGCAGAACGAGGACAAGACAATGCCGACGAAGGGCCAAAGCACTGCGCCA CCTGTGATCCCCAGCTTTTCGACTGCTGCTCCTGCTCTTTCTATGACAAG GTCCTCCCCTCGAGTGCGGAAGCGCCATTCCGTGAACGATACGCTGTTGT CGATCAAAACGCTGATTAAGGACACCCCTAGCTTTCATTTGCCTGTGCCT CCGACTGCACCGACCGTGTCTGGAGCGGCTGGCTCTAGCAAAGAGCTTAC TGCACAGATTCATGAAGTTGAGGCGAAAATTATTTCGCTTGAGAGGGAGC TTGGAAACATTCGCAACAAAGCGGTTAAAGCCCAGCAAATGTCGCGCTCA CCTAGCAAAAAGAAGAAAGGCGGGCCGAGACTGCATATGGATGCGGAGTC GGAATCAAAAAAGCGGTATGCAGCGTTGGCACAAAAAATATTGGAGAGCG CAGAAAGAATACCGATCACGAAGCGGCCGAAACCCTCTCCAGTTCCTATG CATGCGGCTTTTCGACTGTTGCTCACGCAGAACCGTACAAAGGCTGCGGC GGCCCACGCAAAGTGTAGATGTCTGCATAGTGATAGTGAATTTGGGCTTA CTCCTTCACTTTCTTCGTCTAAACTGGCGCTTTCAAAGGTTTCAGAAGAA GTACTCCGAAAAGTTGCCCATGAGCTAAAGCGTCGCCGCCACACCGCCCT CGAGCGAAGACGGAAGTTAGCTCGCGAGTATTCCATTGCGAGAGAAACGT GGGCCAGGAGGCTCAAGTCTGCCCGCGACAAACGCTCGAGAGAGAAACGA GAAGCTATACGTGAACGAGATCGGTGTATACTGCTCTCGACAAAGGGCAG TTCAGCGCTGTTAACCCAAAGAACGAGTTCTGGGCGAACGAGCACCAAGA TTTTTCCTTCGATTAGTCCAAACGGGCCAACAAATGGGATGGCTGGGCTT GATGCTCAACTAGCAGAGATTGAAGCCGCTGGAGGTACTCCTGGCTTCAA TGCCATATGGTCTAAAACGCTGGCACTCATTCCCGACCAAGATTTCACCT ACACTCCGGTCCCGTGCACTTCTGTGTTAGTTGAAGATCCACTAGCGGAC TTCCTTGCCTCACGCGCCGTCAACCCTTGGCGATTTGATGAGAAACTTGT CTTTCTAGATAAGTTCCTTGCCTACCCGAAGAATTTCAGAAAGATCTCTA GTTTCCTAACCCACAAGTCCAGCAGAGACTGCAGTTACTTTTACTATACA AATAAGTTGAACTTGGGCCTCAAGCAGCTTGTGAAGGAATACCAGTCTTT GAAGAGAAAGGGTACCCTGAGACAGCACATTATGCAAGTGGCTAGGAGAC ATACAACGAACACTGTACCTGTCGAGAAGCAGCTCACTAAGGGCGAAGTA GATACAGTCATATCCGGTGCTGAGGCGAGCATTGACCACCTTGGTATTGA TGGCAGGGGACAAACGTATCCCTGGTTCACCGATGTCTCTGTTGTTTTCA TGAAGCGATCCGAGCGTGTTCTAATCGACTTTGGAGTGGTAGATCTCGAT GGAATTGACCGCAAATCATTTGCGCACGCACTTTCCATACACGGTGCCGA TTGGAAAGCAATTTCAATGCAAATGAGAGTGGAGGGGAAAACTTCAACTC ACTACCGGGAATACTTCCGCCAGAATCGAAAGGCTCTTGAACGTGAAGCT CTATTGCTTCAAAGATTGGCAAAATTGCCAATGAGTATGAGAAGATCACT GGGGGCAAGGAGTAAGTCTCCCCGCATGTCTCCCAGATCATCACCTAGAG CTTCCCCAAGATCGTCCTCCACTTCAAACGACAAGCTGAAACTTGTACTG CCCTTAGGCGGTATATCTCTACCAAACGGTTCAATTTTGTCCAAGCCGAG CAAGAGACGAGATGCGGGAGGTTTGGGCTGGGATGAGAAGAATTGCCCCT CCGTCAGAGTAGGAGACAATGGAAAGAATGAAAGAGAACCCAAGCATGGC CACCTGGCAAATGCTCACCACTGA back to top
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