Gchil1052.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1052.t1
Unique NameGchil1052.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:299260..300467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1306406.ASHX01000001_gene4469
PFAMsCHAP,DUF11,PKD,PPC
Max annot lvl2|Bacteria
Evalue4.03e-10
EggNOG OGsCOG3291@1|root,COG3291@2|Bacteria
Descriptionmetallopeptidase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1052Gchil1052Gracilaria chilensis NLEC103_M9 malegenetig00000172_pilon 299260..300467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1052.t1Gchil1052.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000172_pilon 299260..300467 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1052.t1.start1Gchil1052.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000172_pilon 299260..299262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1052.t1.CDS1Gchil1052.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 299260..299917 +
Gchil1052.t1.CDS2Gchil1052.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 300331..300467 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1052.t1.exon1Gchil1052.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 299260..299917 +
Gchil1052.t1.exon2Gchil1052.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 300331..300467 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1052.t1.intron1Gchil1052.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000172_pilon 299918..300330 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1052.t1.stop1Gchil1052.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000172_pilon 300465..300467 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1052.t1 ID=Gchil1052.t1|Name=Gchil1052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=265bp
MGFRFLAVAALAALSALGVQAAPAPQQCEIKNVCYIIDQSGSISDAEYVL
EQNFVKRVADAIQTESSVTPFNSAVAFSDYAQTIQDPTNDINTFKTAVNA
ERIFRGSTSISSGLNQCKNELNNAQDSKVMVLITDGQANSGDINPARQAA
SGAKAAGIDIITVGIGNGVSTDFLKEIASDPSLFIDANFDDLNQKVPDVV
EAVCDPSPTPPPCEKAFNDCLNLCLQRLKEWDPFDTFDLLYSFHYRTVDF
LVVPERLNWLWWAR*
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spliced messenger RNA

>Gchil1052.t1 ID=Gchil1052.t1|Name=Gchil1052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000172_pilon:299260..300467+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATTCCGTTTCCTCGCCGTCGCTGCTCTTGCAGCCCTTTCCGCCCT
GGGAGTTCAAGCTGCGCCGGCTCCCCAGCAGTGCGAGATAAAAAATGTGT
GCTATATTATAGATCAGTCAGGATCAATCTCCGACGCGGAATATGTTTTA
GAACAAAActttgtgaagagagttgccgacgcgatacaaactgaatcatc
tgtcactccGTTCAACTCTGCTGTTGCTTTCTCGGACTATGCCCAAACCA
TTCAAGATCCAACTAATGATATCAACACATTTAAAACCGCCGTCAATGCT
GAAAGAATATTCCGTGGATCGACTTCTATCTCTTCTGGTCTAAATCAATG
CAAAAACGAGCTCAACAATGCCCAGGATAGTAAGGTCATGGTGCTCATAA
CTGACGGTCAGGCCAACTCAGGTGACATCAACCCCGCAAGACAGGCCGCA
AGTGGTGCGAAGGCCGCCGGTATCGATATTATTACTGTTGGTATCGGAAA
TGGCGTAAGCACTGACTTCTTGAAGGAAATTGCAAGTGACCCTAGCCTAT
TTATCGACGCCAACTTTGATGATCTTAATCAAAAGGTGCCCGATGTAGTT
GAAGCCGTTTGTGACCCTAGTCCTACTCCACCCCCATGTGAGAAGGCATT
CAATGATTGTTTGAACCTTTGTTTACAGAGGCTGAAGGAATGGGATCCTT
TTGATACTTTCGACTTGCTTTATAGCTTTCATTATCGAACTGTTGATTTC
CTTGTTGTACCCGAGCGACTTAATTGGCTCTGGTGGGCTAGATAA
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protein sequence of Gchil1052.t1

>Gchil1052.t1 ID=Gchil1052.t1|Name=Gchil1052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=265bp
MGFRFLAVAALAALSALGVQAAPAPQQCEIKNVCYIIDQSGSISDAEYVL
EQNFVKRVADAIQTESSVTPFNSAVAFSDYAQTIQDPTNDINTFKTAVNA
ERIFRGSTSISSGLNQCKNELNNAQDSKVMVLITDGQANSGDINPARQAA
SGAKAAGIDIITVGIGNGVSTDFLKEIASDPSLFIDANFDDLNQKVPDVV
EAVCDPSPTPPPCEKAFNDCLNLCLQRLKEWDPFDTFDLLYSFHYRTVDF
LVVPERLNWLWWAR*
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mRNA from alignment at tig00000172_pilon:299260..300467+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1052.t1 ID=Gchil1052.t1|Name=Gchil1052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1208bp|location=Sequence derived from alignment at tig00000172_pilon:299260..300467+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGATTCCGTTTCCTCGCCGTCGCTGCTCTTGCAGCCCTTTCCGCCCT
GGGAGTTCAAGCTGCGCCGGCTCCCCAGCAGTGCGAGATAAAAAATGTGT
GCTATATTATAGATCAGTCAGGATCAATCTCCGACGCGGAATATGTTTTA
GAACAAAActttgtgaagagagttgccgacgcgatacaaactgaatcatc
tgtcactccGTTCAACTCTGCTGTTGCTTTCTCGGACTATGCCCAAACCA
TTCAAGATCCAACTAATGATATCAACACATTTAAAACCGCCGTCAATGCT
GAAAGAATATTCCGTGGATCGACTTCTATCTCTTCTGGTCTAAATCAATG
CAAAAACGAGCTCAACAATGCCCAGGATAGTAAGGTCATGGTGCTCATAA
CTGACGGTCAGGCCAACTCAGGTGACATCAACCCCGCAAGACAGGCCGCA
AGTGGTGCGAAGGCCGCCGGTATCGATATTATTACTGTTGGTATCGGAAA
TGGCGTAAGCACTGACTTCTTGAAGGAAATTGCAAGTGACCCTAGCCTAT
TTATCGACGCCAACTTTGATGATCTTAATCAAAAGGTGCCCGATGTAGTT
GAAGCCGTTTGTGACCCTAGTCCTACTCCACCCCCATGTGAGAAGGCATT
CAATGATTGTGAGTTCAAGTTCGCGAACAAAGATTTTTCGGACAAATTCG
ACATTACTGGCGAGCCGGACATTGCATtcacaaccagagttgttccaaag
gatgtgacctactctctcggtgttctgaacagcaacaacattgctccaga
attcatatttgaaaatggtgatgCGAGGCCAattacggatttcggttcgc
agagattcacacctactcacttcaagccgtactggatcgctcaggatcgt
ggatctggagttggtcatcagaccttccatggaaaccaagagcagattgc
gcgcgacaagtgtgtgcgtgtgtacttcacgagtttccaggaaattaggg
aatacaacatcgtgaacaggaacaacgtgcctcgcactgcaaacaaatgc
gtcgttttcaaaactgAGTAGGTTTGAACCTTTGTTTACAGAGGCTGAAG
GAATGGGATCCTTTTGATACTTTCGACTTGCTTTATAGCTTTCATTATCG
AACTGTTGATTTCCTTGTTGTACCCGAGCGACTTAATTGGCTCTGGTGGG
CTAGATAA
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Coding sequence (CDS) from alignment at tig00000172_pilon:299260..300467+

>Gchil1052.t1 ID=Gchil1052.t1|Name=Gchil1052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000172_pilon:299260..300467+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGATTCCGTTTCCTCGCCGTCGCTGCTCTTGCAGCCCTTTCCGCCCT
GGGAGTTCAAGCTGCGCCGGCTCCCCAGCAGTGCGAGATAAAAAATGTGT
GCTATATTATAGATCAGTCAGGATCAATCTCCGACGCGGAATATGTTTTA
GAACAAAActttgtgaagagagttgccgacgcgatacaaactgaatcatc
tgtcactccGTTCAACTCTGCTGTTGCTTTCTCGGACTATGCCCAAACCA
TTCAAGATCCAACTAATGATATCAACACATTTAAAACCGCCGTCAATGCT
GAAAGAATATTCCGTGGATCGACTTCTATCTCTTCTGGTCTAAATCAATG
CAAAAACGAGCTCAACAATGCCCAGGATAGTAAGGTCATGGTGCTCATAA
CTGACGGTCAGGCCAACTCAGGTGACATCAACCCCGCAAGACAGGCCGCA
AGTGGTGCGAAGGCCGCCGGTATCGATATTATTACTGTTGGTATCGGAAA
TGGCGTAAGCACTGACTTCTTGAAGGAAATTGCAAGTGACCCTAGCCTAT
TTATCGACGCCAACTTTGATGATCTTAATCAAAAGGTGCCCGATGTAGTT
GAAGCCGTTTGTGACCCTAGTCCTACTCCACCCCCATGTGAGAAGGCATT
CAATGATTGTTTGAACCTTTGTTTACAGAGGCTGAAGGAATGGGATCCTT
TTGATACTTTCGACTTGCTTTATAGCTTTCATTATCGAACTGTTGATTTC
CTTGTTGTACCCGAGCGACTTAATTGGCTCTGGTGGGCTAGATAA
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