Gchil10519.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10519.t1
Unique NameGchil10519.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:431773..432423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704440.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006839,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0034755,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046873,GO:0046915,GO:0048250,GO:0051179,GO:0051234,GO:0055085,GO:0097286,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:1990542
Evalue3e-67
EggNOG OGsKOG0760@1|root,KOG0760@2759|Eukaryota
Descriptioniron import into the mitochondrion
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10519Gchil10519Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 431773..432423 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10519.t1.stop1Gchil10519.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 431773..431775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10519.t1.CDS1Gchil10519.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 431773..432423 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10519.t1.exon1Gchil10519.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 431773..432423 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10519.t1.start1Gchil10519.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 432421..432423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10519.t1Gchil10519.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 431773..432423 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10519.t1 ID=Gchil10519.t1|Name=Gchil10519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=217bp
MQAPAVATYLSTYDYSKEHISVATGISNTAPVVHLASGLVAETVSAVFWV
PMEVIKQRAQVRTGALAAAHTAVIAKDLIAHEGPRALFKGYGLTVGVFGP
YSMLYFMAYERFKSLGGNGSTAGTAASAAGAGAIAAACTTPLDVIKTRIQ
TQGDVTRGASRYSGTWDAMKSIAREEGIHSFFRGTSARVLWIMPGTAITM
SCFEFLKSYFRLAPER*
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spliced messenger RNA

>Gchil10519.t1 ID=Gchil10519.t1|Name=Gchil10519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000159_pilon:431773..432423- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCCCCCGCAGTCGCTACTTATCTATCAACTTATGACTACTCAAA
AGAACACATATCGGTCGCGACGGGAATATCAAACACAGCTCCGGTGGTAC
ACTTGGCTTCTGGACTTGTAGCGGAAACTGTTTCAGCGGTGTTTTGGGTG
CCTATGGAAGTTATCAAGCAAAGAGCTCAAGTTCGCACTGGTGCGCTTGC
GGCAGCACATACTGCAGTTATAGCGAAGGATTTGATAGCTCACGAAGGTC
CTCGCGCTCTATTCAAAGGATATGGCCTCACTGTCGGCGTTTTCGGTCCA
TATTCGATGCTATATTTCATGGCATACGAGCGGTTCAAAAGCCTTGGCGG
AAATGGCTCCACGGCCGGTACAGCAGCAAGTGCAGCCGGTGCGGGAGCCA
TAGCTGCAGCATGCACCACGCCATTGGATGTTATAAAGACAAGGATTCAA
ACACAGGGGGATGTGACTCGTGGGGCATCAAGGTACTCGGGCACTTGGGA
TGCAATGAAAAGCATTGCTAGAGAAGAGGGCATACACAGTTTCTTTCGAG
GCACTTCAGCACGCGTGTTATGGATCATGCCAGGAACTGCAATTACAATG
TCCTGCTTCGAGTTTTTGAAAAGTTACTTTAGACTAGCCCCAGAACGGTA
G
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protein sequence of Gchil10519.t1

>Gchil10519.t1 ID=Gchil10519.t1|Name=Gchil10519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=217bp
MQAPAVATYLSTYDYSKEHISVATGISNTAPVVHLASGLVAETVSAVFWV
PMEVIKQRAQVRTGALAAAHTAVIAKDLIAHEGPRALFKGYGLTVGVFGP
YSMLYFMAYERFKSLGGNGSTAGTAASAAGAGAIAAACTTPLDVIKTRIQ
TQGDVTRGASRYSGTWDAMKSIAREEGIHSFFRGTSARVLWIMPGTAITM
SCFEFLKSYFRLAPER*
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mRNA from alignment at tig00000159_pilon:431773..432423-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10519.t1 ID=Gchil10519.t1|Name=Gchil10519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000159_pilon:431773..432423- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGCCCCCGCAGTCGCTACTTATCTATCAACTTATGACTACTCAAA
AGAACACATATCGGTCGCGACGGGAATATCAAACACAGCTCCGGTGGTAC
ACTTGGCTTCTGGACTTGTAGCGGAAACTGTTTCAGCGGTGTTTTGGGTG
CCTATGGAAGTTATCAAGCAAAGAGCTCAAGTTCGCACTGGTGCGCTTGC
GGCAGCACATACTGCAGTTATAGCGAAGGATTTGATAGCTCACGAAGGTC
CTCGCGCTCTATTCAAAGGATATGGCCTCACTGTCGGCGTTTTCGGTCCA
TATTCGATGCTATATTTCATGGCATACGAGCGGTTCAAAAGCCTTGGCGG
AAATGGCTCCACGGCCGGTACAGCAGCAAGTGCAGCCGGTGCGGGAGCCA
TAGCTGCAGCATGCACCACGCCATTGGATGTTATAAAGACAAGGATTCAA
ACACAGGGGGATGTGACTCGTGGGGCATCAAGGTACTCGGGCACTTGGGA
TGCAATGAAAAGCATTGCTAGAGAAGAGGGCATACACAGTTTCTTTCGAG
GCACTTCAGCACGCGTGTTATGGATCATGCCAGGAACTGCAATTACAATG
TCCTGCTTCGAGTTTTTGAAAAGTTACTTTAGACTAGCCCCAGAACGGTA
G
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Coding sequence (CDS) from alignment at tig00000159_pilon:431773..432423-

>Gchil10519.t1 ID=Gchil10519.t1|Name=Gchil10519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000159_pilon:431773..432423- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGCCCCCGCAGTCGCTACTTATCTATCAACTTATGACTACTCAAA
AGAACACATATCGGTCGCGACGGGAATATCAAACACAGCTCCGGTGGTAC
ACTTGGCTTCTGGACTTGTAGCGGAAACTGTTTCAGCGGTGTTTTGGGTG
CCTATGGAAGTTATCAAGCAAAGAGCTCAAGTTCGCACTGGTGCGCTTGC
GGCAGCACATACTGCAGTTATAGCGAAGGATTTGATAGCTCACGAAGGTC
CTCGCGCTCTATTCAAAGGATATGGCCTCACTGTCGGCGTTTTCGGTCCA
TATTCGATGCTATATTTCATGGCATACGAGCGGTTCAAAAGCCTTGGCGG
AAATGGCTCCACGGCCGGTACAGCAGCAAGTGCAGCCGGTGCGGGAGCCA
TAGCTGCAGCATGCACCACGCCATTGGATGTTATAAAGACAAGGATTCAA
ACACAGGGGGATGTGACTCGTGGGGCATCAAGGTACTCGGGCACTTGGGA
TGCAATGAAAAGCATTGCTAGAGAAGAGGGCATACACAGTTTCTTTCGAG
GCACTTCAGCACGCGTGTTATGGATCATGCCAGGAACTGCAATTACAATG
TCCTGCTTCGAGTTTTTGAAAAGTTACTTTAGACTAGCCCCAGAACGGTA
G
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