Gchil10518.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10518.t1
Unique Name	Gchil10518.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	268

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000159_pilon	contig	tig00000159_pilon:430865..431668 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004993287.1
Preferred name	TSN
PFAMs	Translin
Max annot lvl	33154\|Opisthokonta
KEGG rclass	RC00017
KEGG ko	ko:K05287
KEGG Reaction	R05923,R05924,R08107
KEGG Pathway	ko00563,ko01100,map00563,map01100
KEGG Module	M00065
GOs	GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0008033,GO:0008150,GO:0008152,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0019222,GO:0031047,GO:0031647,GO:0031667,GO:0034470,GO:0034641,GO:0034660,GO:0035194,GO:0035939,GO:0040029,GO:0042162,GO:0042321,GO:0042594,GO:0042595,GO:0042749,GO:0042752,GO:0042754,GO:0042802,GO:0042803,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045187,GO:0046483,GO:0046983,GO:0048519,GO:0048521,GO:0050789,GO:0050795,GO:0050821,GO:0050896,GO:0051239,GO:0051241,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098847,GO:0140098,GO:1901360,GO:1901363,GO:1990605,GO:1990837
Evalue	1.81e-28
EggNOG OGs	KOG3067@1\|root,KOG3067@2759\|Eukaryota,38HYI@33154\|Opisthokonta
Description	single-stranded DNA binding
COG category	K
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10518	Gchil10518	Gracilaria chilensis NLEC103_M9 male	gene	tig00000159_pilon 430865..431668 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10518.t1.start1	Gchil10518.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000159_pilon 430865..430867 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10518.t1.CDS1	Gchil10518.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000159_pilon 430865..431668 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10518.t1.exon1	Gchil10518.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000159_pilon 430865..431668 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10518.t1.stop1	Gchil10518.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000159_pilon 431666..431668 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10518.t1	Gchil10518.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000159_pilon 430865..431668 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000159_pilon:430865..431668+
coding sequence from alignment at tig00000159_pilon:430865..431668+

mRNA sequence

>Gchil10518.t1 ID=Gchil10518.t1|Name=Gchil10518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=268bp
MTEVGEVFESLSDAFAAQDVVRDRIRAKRDEADVVIQAAVRSVQALVRSA
DLAIGVDVVKKALLKTGPAVKAIEDVLPPDPGCIHRYVDFWHHQLQSISM
VCTVIDALSDGTLTRLDEIGSKIGANIHIPLEHYLGGICQSLSELTRLSR
NRVIRQDYESPIACFRFASYIFDGLKQLNLKNDFLRKKYDGVKYEVNHME
NIVYDLTIRGLSSNSKKRPAENDIAPPARKVNLSKDQMVVSPADEVKDTA
LESTMIDDDPRAKAAKN*

spliced messenger RNA

>Gchil10518.t1 ID=Gchil10518.t1|Name=Gchil10518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000159_pilon:430865..431668+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAAGTAGGAGAGGTATTCGAGTCACTCAGCGATGCTTTCGCTGC
TCAGGATGTCGTTCGGGATAGAATACGAGCGAAACGCGACGAAGCTGATG
TCGTGATACAAGCCGCCGTACGTTCTGTTCAAGCCCTTGTGAGATCTGCA
GACCTGGCAATTGGTGTTGATGTGGTAAAGAAAGCGCTCTTGAAGACTGG
ACCTGCTGTGAAAGCAATTGAGGACGTTTTACCCCCTGACCCGGGATGCA
TTCATCGGTATGTTGATTTCTGGCATCACCAGTTGCAATCGATTTCCATG
GTTTGCACTGTCATAGACGCGCTTTCGGATGGCACGTTGACGCGACTCGA
TGAAATCGGCTCAAAGATTGGAGCTAATATTCATATTCCTCTCGAGCACT
ATCTCGGCGGTATATGTCAGTCTCTATCCGAACTCACCCGTCTGTCCCGA
AATCGGGTCATTCGACAAGACTACGAGTCCCCGATCGCCTGCTTTCGCTT
CGCATCATACATATTTGATGGCCTCAAACAACTTAATCTGAAGAATGATT
TCTTGCGCAAGAAGTACGATGGAGTGAAATATGAGGTGAATCATATGGAG
AATATCGTGTATGATCTTACTATTCGCGGTTTGTCGTCGAACAGCAAAAA
GAGACCGGCTGAGAATGATATTGCACCACCAGCCCGAAAAGTTAATCTAA
GCAAAGATCAAATGGTTGTCAGTCCTGCCGATGAGGTGAAAGATACCGCT
CTCGAAAGTACCATGATTGACGACGACCCCAGGGCCAAAGCCGCGAAAAA
CTAA

protein sequence of Gchil10518.t1

>Gchil10518.t1 ID=Gchil10518.t1|Name=Gchil10518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MTEVGEVFESLSDAFAAQDVVRDRIRAKRDEADVVIQAAVRSVQALVRSA
DLAIGVDVVKKALLKTGPAVKAIEDVLPPDPGCIHRYVDFWHHQLQSISM
VCTVIDALSDGTLTRLDEIGSKIGANIHIPLEHYLGGICQSLSELTRLSR
NRVIRQDYESPIACFRFASYIFDGLKQLNLKNDFLRKKYDGVKYEVNHME
NIVYDLTIRGLSSNSKKRPAENDIAPPARKVNLSKDQMVVSPADEVKDTA
LESTMIDDDPRAKAAKN*

mRNA from alignment at tig00000159_pilon:430865..431668+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10518.t1 ID=Gchil10518.t1|Name=Gchil10518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000159_pilon:430865..431668+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGAAGTAGGAGAGGTATTCGAGTCACTCAGCGATGCTTTCGCTGC
TCAGGATGTCGTTCGGGATAGAATACGAGCGAAACGCGACGAAGCTGATG
TCGTGATACAAGCCGCCGTACGTTCTGTTCAAGCCCTTGTGAGATCTGCA
GACCTGGCAATTGGTGTTGATGTGGTAAAGAAAGCGCTCTTGAAGACTGG
ACCTGCTGTGAAAGCAATTGAGGACGTTTTACCCCCTGACCCGGGATGCA
TTCATCGGTATGTTGATTTCTGGCATCACCAGTTGCAATCGATTTCCATG
GTTTGCACTGTCATAGACGCGCTTTCGGATGGCACGTTGACGCGACTCGA
TGAAATCGGCTCAAAGATTGGAGCTAATATTCATATTCCTCTCGAGCACT
ATCTCGGCGGTATATGTCAGTCTCTATCCGAACTCACCCGTCTGTCCCGA
AATCGGGTCATTCGACAAGACTACGAGTCCCCGATCGCCTGCTTTCGCTT
CGCATCATACATATTTGATGGCCTCAAACAACTTAATCTGAAGAATGATT
TCTTGCGCAAGAAGTACGATGGAGTGAAATATGAGGTGAATCATATGGAG
AATATCGTGTATGATCTTACTATTCGCGGTTTGTCGTCGAACAGCAAAAA
GAGACCGGCTGAGAATGATATTGCACCACCAGCCCGAAAAGTTAATCTAA
GCAAAGATCAAATGGTTGTCAGTCCTGCCGATGAGGTGAAAGATACCGCT
CTCGAAAGTACCATGATTGACGACGACCCCAGGGCCAAAGCCGCGAAAAA
CTAA

Coding sequence (CDS) from alignment at tig00000159_pilon:430865..431668+

>Gchil10518.t1 ID=Gchil10518.t1|Name=Gchil10518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000159_pilon:430865..431668+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGAAGTAGGAGAGGTATTCGAGTCACTCAGCGATGCTTTCGCTGC
TCAGGATGTCGTTCGGGATAGAATACGAGCGAAACGCGACGAAGCTGATG
TCGTGATACAAGCCGCCGTACGTTCTGTTCAAGCCCTTGTGAGATCTGCA
GACCTGGCAATTGGTGTTGATGTGGTAAAGAAAGCGCTCTTGAAGACTGG
ACCTGCTGTGAAAGCAATTGAGGACGTTTTACCCCCTGACCCGGGATGCA
TTCATCGGTATGTTGATTTCTGGCATCACCAGTTGCAATCGATTTCCATG
GTTTGCACTGTCATAGACGCGCTTTCGGATGGCACGTTGACGCGACTCGA
TGAAATCGGCTCAAAGATTGGAGCTAATATTCATATTCCTCTCGAGCACT
ATCTCGGCGGTATATGTCAGTCTCTATCCGAACTCACCCGTCTGTCCCGA
AATCGGGTCATTCGACAAGACTACGAGTCCCCGATCGCCTGCTTTCGCTT
CGCATCATACATATTTGATGGCCTCAAACAACTTAATCTGAAGAATGATT
TCTTGCGCAAGAAGTACGATGGAGTGAAATATGAGGTGAATCATATGGAG
AATATCGTGTATGATCTTACTATTCGCGGTTTGTCGTCGAACAGCAAAAA
GAGACCGGCTGAGAATGATATTGCACCACCAGCCCGAAAAGTTAATCTAA
GCAAAGATCAAATGGTTGTCAGTCCTGCCGATGAGGTGAAAGATACCGCT
CTCGAAAGTACCATGATTGACGACGACCCCAGGGCCAAAGCCGCGAAAAA
CTAA