Gchil10517.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10517.t1
Unique NameGchil10517.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length71
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:428449..428822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003061801.1
PFAMsRibosomal_L38e
Max annot lvl3041|Chlorophyta
KEGG koko:K02923
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue3.45e-24
EggNOG OGsKOG3499@1|root,KOG3499@2759|Eukaryota,37VZR@33090|Viridiplantae,34MZ2@3041|Chlorophyta
DescriptionBelongs to the eukaryotic ribosomal protein eL38 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10517Gchil10517Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 428449..428822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10517.t1Gchil10517.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 428449..428822 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10517.t1.stop1Gchil10517.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 428449..428451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10517.t1.CDS1Gchil10517.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 428449..428471 -
Gchil10517.t1.CDS2Gchil10517.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 428547..428733 -
Gchil10517.t1.CDS3Gchil10517.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 428820..428822 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10517.t1.exon1Gchil10517.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 428449..428471 -
Gchil10517.t1.exon2Gchil10517.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 428547..428733 -
Gchil10517.t1.exon3Gchil10517.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 428820..428822 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10517.t1.intron1Gchil10517.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 428472..428546 -
Gchil10517.t1.intron2Gchil10517.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 428734..428819 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10517.t1.start1Gchil10517.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 428820..428822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10517.t1 ID=Gchil10517.t1|Name=Gchil10517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=71bp
MPKQVFEIKDFLLAARRKDARCVTIKKQKSGALKFKVRCSKYLYTLVVKD
NEKADKLTQSLPPVLQRKTV*
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spliced messenger RNA

>Gchil10517.t1 ID=Gchil10517.t1|Name=Gchil10517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=213bp|location=Sequence derived from alignment at tig00000159_pilon:428449..428822- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAGCAAGTGTTCGAAATCAAGGACTTCCTCCTCGCCGCTCGTCG
GAAGGACGCCCGTTGCGTGACCATCAAGAAGCAGAAAAGTGGTGCGCTCA
AATTCAAGGTCCGCTGCTCTAAGTATCTTTACACTCTTGTCGTGAAGGAC
AATGAGAAGGCCGATAAGCTCACCCAGAGTTTACCACCAGTCCTACAACG
TAAGACGGTATAA
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protein sequence of Gchil10517.t1

>Gchil10517.t1 ID=Gchil10517.t1|Name=Gchil10517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=71bp
MPKQVFEIKDFLLAARRKDARCVTIKKQKSGALKFKVRCSKYLYTLVVKD
NEKADKLTQSLPPVLQRKTV*
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mRNA from alignment at tig00000159_pilon:428449..428822-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10517.t1 ID=Gchil10517.t1|Name=Gchil10517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=374bp|location=Sequence derived from alignment at tig00000159_pilon:428449..428822- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGTTCTGAATATATGTTCCATAGCGTCGAGCGTTTCAGCAATCG
GTGATGATGTTAACCCCTAAATGCGTACATCAATCAAAGCCCAAGCAAGT
GTTCGAAATCAAGGACTTCCTCCTCGCCGCTCGTCGGAAGGACGCCCGTT
GCGTGACCATCAAGAAGCAGAAAAGTGGTGCGCTCAAATTCAAGGTCCGC
TGCTCTAAGTATCTTTACACTCTTGTCGTGAAGGACAATGAGAAGGCCGA
TAAGCTCACCCAGAGTTTACCACCAGGTGCGTTATAGTTTGGTCCAGTCG
TGATGGGTGTGACCGTCCACAACACTAACATTGTGCTCTTTGTTGTCCTA
GTCCTACAACGTAAGACGGTATAA
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Coding sequence (CDS) from alignment at tig00000159_pilon:428449..428822-

>Gchil10517.t1 ID=Gchil10517.t1|Name=Gchil10517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=213bp|location=Sequence derived from alignment at tig00000159_pilon:428449..428822- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAAGCAAGTGTTCGAAATCAAGGACTTCCTCCTCGCCGCTCGTCG
GAAGGACGCCCGTTGCGTGACCATCAAGAAGCAGAAAAGTGGTGCGCTCA
AATTCAAGGTCCGCTGCTCTAAGTATCTTTACACTCTTGTCGTGAAGGAC
AATGAGAAGGCCGATAAGCTCACCCAGAGTTTACCACCAGTCCTACAACG
TAAGACGGTATAA
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