Gchil1051.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1051.t1
Unique Name	Gchil1051.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000172_pilon	contig	tig00000172_pilon:244685..246085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1463820.JOGW01000024_gene4857
PFAMs	PI-PLC-X
Max annot lvl	201174\|Actinobacteria
KEGG rclass	RC00017,RC00425
KEGG ko	ko:K01771
KEGG Reaction	R03332
KEGG Pathway	ko00562,map00562
Evalue	4.97e-46
EggNOG OGs	COG0823@1\|root,COG0823@2\|Bacteria,2GMN7@201174\|Actinobacteria
EC	4.6.1.13
Description	Phosphatidylinositol-specific phospholipase C, X domain
COG category	U
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1051	Gchil1051	Gracilaria chilensis NLEC103_M9 male	gene	tig00000172_pilon 244685..246085 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1051.t1.start1	Gchil1051.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000172_pilon 244685..244687 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1051.t1.CDS1	Gchil1051.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000172_pilon 244685..246085 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1051.t1.exon1	Gchil1051.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000172_pilon 244685..246085 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1051.t1.stop1	Gchil1051.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000172_pilon 246083..246085 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1051.t1	Gchil1051.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000172_pilon 244685..246085 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000172_pilon:244685..246085+
coding sequence from alignment at tig00000172_pilon:244685..246085+

mRNA sequence

>Gchil1051.t1 ID=Gchil1051.t1|Name=Gchil1051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=467bp
MSCYDSIPLAPKKQDEENQGLVSQNSKLSPSPLRVYRPVFLLIASLFCFG
GLLLSWNTHRFDQSQIPALYSPKSISPTRITFVDEDGESGETMTSSSDPK
SWLTSAVVDWMLELSDSQSIAHVSIPGTHDSGARYGGAACETQSWTIAKQ
LEAGIRFFDIRCRPAGTVFAIHHGVCFQEMFFGEVLLAVDNFLRAHPSEF
VLMNVQEEHKPMDGSSSFDSIWRTYMSKWGYLFLDRRSTLPTVGQSRGKI
LALLPSSLTDKGIQWGGSLTDMQNIYKVYALLNNYPFGSDTASIGQKKGL
VREYIDKAPTSNKLIINFLSGAVGMIPKDVARSTNQNAYEHIGPYKATKR
VGVITMDFPGDKLVYRVIKTNFATNEYCSAKTFRTQSDKTWAEFRLPRAT
VGTIISFKGGAYYRYSFPKCHRATWTDLRFTCGSTHVWEKVQGSWNADAW
CSSSNTNQDYLATGNR*

spliced messenger RNA

>Gchil1051.t1 ID=Gchil1051.t1|Name=Gchil1051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000172_pilon:244685..246085+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGCTACGATTCCATCCCCCTAGCTCCGAAAAAGCAGGATGAAGA
GAACCAGGGGCTGGTATCTCAAAATTCAAAGCTTTCTCCATCTCCTCTCC
GAGTTTATCGCCCAGTGTTTTTACTCATTGCATCTCTCTTCTGTTTCGGT
GGATTGCTGCTCAGCTGGAATACTCACCGATTTGATCAATCGCAGATCCC
TGCACTCTACTCCCCTAAGAGCATCTCGCCCACACGCATAACGTTCGTTG
ATGAAGATGGAGAATCTGGGGAAACAATGACCTCAAGTAGCGATCCAAAG
TCGTGGCTCACCTCAGCCGTTGTTGACTGGATGCTTGAGTTGTCGGACAG
TCAGTCTATTGCACACGTCTCGATTCCGGGCACACATGACAGTGGAGCAC
GCTACGGAGGTGCCGCATGCGAGACACAGAGCTGGACCATTGCGAAGCAG
CTGGAAGCAGGCATTCGGTTCTTTGACATTCGTTGTCGTCCCGCGGGTAC
GGTGTTTGCCATTCACCATGGGGTATGTTTTCAGGAGATGTTTTTCGGTG
AAGTTCTTCTTGCCGTCGACAACTTCTTGCGGGCTCATCCAAGCGAATTT
GTTCTCATGAACGTTCAAGAGGAACACAAACCCATGGATGGATCATCCTC
ATTTGACTCAATCTGGAGAACATACATGAGCAAATGGGGATATCTGTTCT
TGGATAGGCGTAGCACTCTCCCAACTGTTGGACAAAGCCGAGGAAAAATT
CTTGCTCTTCTTCCAAGTTCATTGACCGACAAAGGAATTCAATGGGGTGG
ATCGCTGACTGATATGCAGAACATATACAAAGTGTATGCTCTGCTCAACA
ATTATCCGTTTGGCTCGGACACAGCCTCAATTGGACAAAAGAAGGGGCTT
GTTCGAGAGTACATCGACAAGGCGCCGACTTCAAACAAGCTGATCATAAA
CTTCTTGTCAGGAGCTGTGGGCATGATTCCAAAGGATGTGGCTCGTTCGA
CAAATCAGAACGCGTATGAACATATTGGCCCTTACAAGGCGACAAAAAGA
GTAGGCGTTATCACAATGGATTTCCCAGGGGACAAACTCGTGTATCGCGT
TATCAAAACCAATTTTGCAACAAACGAGTATTGTTCAGCAAAAACGTTCA
GAACTCAGAGCGACAAGACATGGGCAGAATTTCGACTTCCTCGAGCGACT
GTTGGGACCATTATATCATTTAAGGGTGGGGCATACTATAGGTACAGTTT
TCCAAAATGTCATCGTGCAACTTGGACCGATCTTCGCTTCACATGTGGCT
CAACTCATGTCTGGGAAAAGGTGCAGGGATCATGGAACGCAGATGCCTGG
TGCTCCAGTAGCAATACTAATCAAGACTATCTGGCTACAGGAAACCGTTA
A

protein sequence of Gchil1051.t1

>Gchil1051.t1 ID=Gchil1051.t1|Name=Gchil1051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=467bp
MSCYDSIPLAPKKQDEENQGLVSQNSKLSPSPLRVYRPVFLLIASLFCFG
GLLLSWNTHRFDQSQIPALYSPKSISPTRITFVDEDGESGETMTSSSDPK
SWLTSAVVDWMLELSDSQSIAHVSIPGTHDSGARYGGAACETQSWTIAKQ
LEAGIRFFDIRCRPAGTVFAIHHGVCFQEMFFGEVLLAVDNFLRAHPSEF
VLMNVQEEHKPMDGSSSFDSIWRTYMSKWGYLFLDRRSTLPTVGQSRGKI
LALLPSSLTDKGIQWGGSLTDMQNIYKVYALLNNYPFGSDTASIGQKKGL
VREYIDKAPTSNKLIINFLSGAVGMIPKDVARSTNQNAYEHIGPYKATKR
VGVITMDFPGDKLVYRVIKTNFATNEYCSAKTFRTQSDKTWAEFRLPRAT
VGTIISFKGGAYYRYSFPKCHRATWTDLRFTCGSTHVWEKVQGSWNADAW
CSSSNTNQDYLATGNR*

mRNA from alignment at tig00000172_pilon:244685..246085+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1051.t1 ID=Gchil1051.t1|Name=Gchil1051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000172_pilon:244685..246085+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTGCTACGATTCCATCCCCCTAGCTCCGAAAAAGCAGGATGAAGA
GAACCAGGGGCTGGTATCTCAAAATTCAAAGCTTTCTCCATCTCCTCTCC
GAGTTTATCGCCCAGTGTTTTTACTCATTGCATCTCTCTTCTGTTTCGGT
GGATTGCTGCTCAGCTGGAATACTCACCGATTTGATCAATCGCAGATCCC
TGCACTCTACTCCCCTAAGAGCATCTCGCCCACACGCATAACGTTCGTTG
ATGAAGATGGAGAATCTGGGGAAACAATGACCTCAAGTAGCGATCCAAAG
TCGTGGCTCACCTCAGCCGTTGTTGACTGGATGCTTGAGTTGTCGGACAG
TCAGTCTATTGCACACGTCTCGATTCCGGGCACACATGACAGTGGAGCAC
GCTACGGAGGTGCCGCATGCGAGACACAGAGCTGGACCATTGCGAAGCAG
CTGGAAGCAGGCATTCGGTTCTTTGACATTCGTTGTCGTCCCGCGGGTAC
GGTGTTTGCCATTCACCATGGGGTATGTTTTCAGGAGATGTTTTTCGGTG
AAGTTCTTCTTGCCGTCGACAACTTCTTGCGGGCTCATCCAAGCGAATTT
GTTCTCATGAACGTTCAAGAGGAACACAAACCCATGGATGGATCATCCTC
ATTTGACTCAATCTGGAGAACATACATGAGCAAATGGGGATATCTGTTCT
TGGATAGGCGTAGCACTCTCCCAACTGTTGGACAAAGCCGAGGAAAAATT
CTTGCTCTTCTTCCAAGTTCATTGACCGACAAAGGAATTCAATGGGGTGG
ATCGCTGACTGATATGCAGAACATATACAAAGTGTATGCTCTGCTCAACA
ATTATCCGTTTGGCTCGGACACAGCCTCAATTGGACAAAAGAAGGGGCTT
GTTCGAGAGTACATCGACAAGGCGCCGACTTCAAACAAGCTGATCATAAA
CTTCTTGTCAGGAGCTGTGGGCATGATTCCAAAGGATGTGGCTCGTTCGA
CAAATCAGAACGCGTATGAACATATTGGCCCTTACAAGGCGACAAAAAGA
GTAGGCGTTATCACAATGGATTTCCCAGGGGACAAACTCGTGTATCGCGT
TATCAAAACCAATTTTGCAACAAACGAGTATTGTTCAGCAAAAACGTTCA
GAACTCAGAGCGACAAGACATGGGCAGAATTTCGACTTCCTCGAGCGACT
GTTGGGACCATTATATCATTTAAGGGTGGGGCATACTATAGGTACAGTTT
TCCAAAATGTCATCGTGCAACTTGGACCGATCTTCGCTTCACATGTGGCT
CAACTCATGTCTGGGAAAAGGTGCAGGGATCATGGAACGCAGATGCCTGG
TGCTCCAGTAGCAATACTAATCAAGACTATCTGGCTACAGGAAACCGTTA
A

Coding sequence (CDS) from alignment at tig00000172_pilon:244685..246085+

>Gchil1051.t1 ID=Gchil1051.t1|Name=Gchil1051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000172_pilon:244685..246085+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTGCTACGATTCCATCCCCCTAGCTCCGAAAAAGCAGGATGAAGA
GAACCAGGGGCTGGTATCTCAAAATTCAAAGCTTTCTCCATCTCCTCTCC
GAGTTTATCGCCCAGTGTTTTTACTCATTGCATCTCTCTTCTGTTTCGGT
GGATTGCTGCTCAGCTGGAATACTCACCGATTTGATCAATCGCAGATCCC
TGCACTCTACTCCCCTAAGAGCATCTCGCCCACACGCATAACGTTCGTTG
ATGAAGATGGAGAATCTGGGGAAACAATGACCTCAAGTAGCGATCCAAAG
TCGTGGCTCACCTCAGCCGTTGTTGACTGGATGCTTGAGTTGTCGGACAG
TCAGTCTATTGCACACGTCTCGATTCCGGGCACACATGACAGTGGAGCAC
GCTACGGAGGTGCCGCATGCGAGACACAGAGCTGGACCATTGCGAAGCAG
CTGGAAGCAGGCATTCGGTTCTTTGACATTCGTTGTCGTCCCGCGGGTAC
GGTGTTTGCCATTCACCATGGGGTATGTTTTCAGGAGATGTTTTTCGGTG
AAGTTCTTCTTGCCGTCGACAACTTCTTGCGGGCTCATCCAAGCGAATTT
GTTCTCATGAACGTTCAAGAGGAACACAAACCCATGGATGGATCATCCTC
ATTTGACTCAATCTGGAGAACATACATGAGCAAATGGGGATATCTGTTCT
TGGATAGGCGTAGCACTCTCCCAACTGTTGGACAAAGCCGAGGAAAAATT
CTTGCTCTTCTTCCAAGTTCATTGACCGACAAAGGAATTCAATGGGGTGG
ATCGCTGACTGATATGCAGAACATATACAAAGTGTATGCTCTGCTCAACA
ATTATCCGTTTGGCTCGGACACAGCCTCAATTGGACAAAAGAAGGGGCTT
GTTCGAGAGTACATCGACAAGGCGCCGACTTCAAACAAGCTGATCATAAA
CTTCTTGTCAGGAGCTGTGGGCATGATTCCAAAGGATGTGGCTCGTTCGA
CAAATCAGAACGCGTATGAACATATTGGCCCTTACAAGGCGACAAAAAGA
GTAGGCGTTATCACAATGGATTTCCCAGGGGACAAACTCGTGTATCGCGT
TATCAAAACCAATTTTGCAACAAACGAGTATTGTTCAGCAAAAACGTTCA
GAACTCAGAGCGACAAGACATGGGCAGAATTTCGACTTCCTCGAGCGACT
GTTGGGACCATTATATCATTTAAGGGTGGGGCATACTATAGGTACAGTTT
TCCAAAATGTCATCGTGCAACTTGGACCGATCTTCGCTTCACATGTGGCT
CAACTCATGTCTGGGAAAAGGTGCAGGGATCATGGAACGCAGATGCCTGG
TGCTCCAGTAGCAATACTAATCAAGACTATCTGGCTACAGGAAACCGTTA
A