Gchil10484.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10484.t1
Unique NameGchil10484.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length317
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:176007..176957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10484Gchil10484Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 176007..176957 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10484.t1.start1Gchil10484.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 176007..176009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10484.t1.CDS1Gchil10484.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 176007..176957 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10484.t1.exon1Gchil10484.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 176007..176957 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10484.t1.stop1Gchil10484.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 176955..176957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10484.t1Gchil10484.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 176007..176957 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10484.t1 ID=Gchil10484.t1|Name=Gchil10484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=317bp
MTCSFDNMLPPTERMPYTIITPQYSPNTTVAISLRHFEKQSKHQAEQEYD
DEHGTLPDTSVDEDLSVDLHERTIQKKKRKVRSAIVSRRKNAIYEKKLEE
ELHHRDNVNADLRSKLALFRDVLDNIGEKISALERSAHRKQAHAAPFASS
SASQLAPHVLRRARPNINSFNNAMFDAQQHLFAQQQQQLQQQLQQQQQQQ
QQQQQQQNMFFLQNEDRLVEDVLNGGSTLVSPPPPAPLVPKNVSSGFQDL
DFSSECSDRQISPAIPPPAASVAPSQRCVGASFSDMPNLTADDAFSAFEA
RAARGAQSLLPPPFIV*
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spliced messenger RNA

>Gchil10484.t1 ID=Gchil10484.t1|Name=Gchil10484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000159_pilon:176007..176957+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTGCTCTTTTGATAATATGTTGCCGCCTACCGAACGCATGCCGTA
CACCATCATCACACCGCAGTACTCGCCCAACACCACCGTGGCCATTTCGT
TGCGCCACTTTGAAAAGCAATCCAAACACCAAGCCGAGCAGGAGTACGAC
GACGAACATGGCACACTCCCCGACACCAGTGTGGACGAAGATCTCTCCGT
CGATCTTCACGAGCGCACCATCCAGAAGAAGAAACGCAAGGTTCGCTCCG
CCATCGTCTCTCGTCGAAAAAACGCCATTTATGAGAAGAAACTCGAAGAA
GAACTGCACCATCGTGACAATGTCAACGCCGACCTACGCTCTAAACTCGC
CCTCTTTCGGGACGTTCTGGATAACATTGGCGAAAAAATCTCCGCTCTCG
AGCGCAGTGCACATAGAAAACAGGCGCATGCCGCCCCGTTCGCGTCCTCT
TCTGCTTCGCAACTTGCGCCGCACGTGCTGCGTCGTGCGCGTCCAAACAT
CAATTCTTTCAACAACGCCATGTTTGACGCGCAGCAACACTTGTTTGCac
agcaacagcaacagttgcagcaacagttgcaacaacaacaacagcagcag
cagcaacaacaacaacaacaaaataTGTTTTTTCTTCAAAACGAGGACCG
ACTAGTGGAGGACGTGCTCAATGGCGGTTCGACGCTTGTGTCGCCGCCGC
CGCCCGCGCCTTTGGTGCCGAAGAACGTGTCGTCGGGTTTTCAGGATCTA
GATTTTTCTAGCGAGTGCTCGGACCGTCAAATATCTCCGGCCATCCCTCC
GCCCGCCGCCTCCGTCGCCCCGTCTCAGCGCTGTGTGGGTGCCTCATTCT
CCGACATGCCCAACCTCACCGCCGACGACGCCTTTTCAGCGTTTGAGGCG
CGTGCCGCGCGCGGCGCACAATCTCTTCTACCGCCGCCTTTCATTGTATA
G
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protein sequence of Gchil10484.t1

>Gchil10484.t1 ID=Gchil10484.t1|Name=Gchil10484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=317bp
MTCSFDNMLPPTERMPYTIITPQYSPNTTVAISLRHFEKQSKHQAEQEYD
DEHGTLPDTSVDEDLSVDLHERTIQKKKRKVRSAIVSRRKNAIYEKKLEE
ELHHRDNVNADLRSKLALFRDVLDNIGEKISALERSAHRKQAHAAPFASS
SASQLAPHVLRRARPNINSFNNAMFDAQQHLFAQQQQQLQQQLQQQQQQQ
QQQQQQQNMFFLQNEDRLVEDVLNGGSTLVSPPPPAPLVPKNVSSGFQDL
DFSSECSDRQISPAIPPPAASVAPSQRCVGASFSDMPNLTADDAFSAFEA
RAARGAQSLLPPPFIV*
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mRNA from alignment at tig00000159_pilon:176007..176957+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10484.t1 ID=Gchil10484.t1|Name=Gchil10484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000159_pilon:176007..176957+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTGCTCTTTTGATAATATGTTGCCGCCTACCGAACGCATGCCGTA
CACCATCATCACACCGCAGTACTCGCCCAACACCACCGTGGCCATTTCGT
TGCGCCACTTTGAAAAGCAATCCAAACACCAAGCCGAGCAGGAGTACGAC
GACGAACATGGCACACTCCCCGACACCAGTGTGGACGAAGATCTCTCCGT
CGATCTTCACGAGCGCACCATCCAGAAGAAGAAACGCAAGGTTCGCTCCG
CCATCGTCTCTCGTCGAAAAAACGCCATTTATGAGAAGAAACTCGAAGAA
GAACTGCACCATCGTGACAATGTCAACGCCGACCTACGCTCTAAACTCGC
CCTCTTTCGGGACGTTCTGGATAACATTGGCGAAAAAATCTCCGCTCTCG
AGCGCAGTGCACATAGAAAACAGGCGCATGCCGCCCCGTTCGCGTCCTCT
TCTGCTTCGCAACTTGCGCCGCACGTGCTGCGTCGTGCGCGTCCAAACAT
CAATTCTTTCAACAACGCCATGTTTGACGCGCAGCAACACTTGTTTGCac
agcaacagcaacagttgcagcaacagttgcaacaacaacaacagcagcag
cagcaacaacaacaacaacaaaataTGTTTTTTCTTCAAAACGAGGACCG
ACTAGTGGAGGACGTGCTCAATGGCGGTTCGACGCTTGTGTCGCCGCCGC
CGCCCGCGCCTTTGGTGCCGAAGAACGTGTCGTCGGGTTTTCAGGATCTA
GATTTTTCTAGCGAGTGCTCGGACCGTCAAATATCTCCGGCCATCCCTCC
GCCCGCCGCCTCCGTCGCCCCGTCTCAGCGCTGTGTGGGTGCCTCATTCT
CCGACATGCCCAACCTCACCGCCGACGACGCCTTTTCAGCGTTTGAGGCG
CGTGCCGCGCGCGGCGCACAATCTCTTCTACCGCCGCCTTTCATTGTATA
G
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Coding sequence (CDS) from alignment at tig00000159_pilon:176007..176957+

>Gchil10484.t1 ID=Gchil10484.t1|Name=Gchil10484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00000159_pilon:176007..176957+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTGCTCTTTTGATAATATGTTGCCGCCTACCGAACGCATGCCGTA
CACCATCATCACACCGCAGTACTCGCCCAACACCACCGTGGCCATTTCGT
TGCGCCACTTTGAAAAGCAATCCAAACACCAAGCCGAGCAGGAGTACGAC
GACGAACATGGCACACTCCCCGACACCAGTGTGGACGAAGATCTCTCCGT
CGATCTTCACGAGCGCACCATCCAGAAGAAGAAACGCAAGGTTCGCTCCG
CCATCGTCTCTCGTCGAAAAAACGCCATTTATGAGAAGAAACTCGAAGAA
GAACTGCACCATCGTGACAATGTCAACGCCGACCTACGCTCTAAACTCGC
CCTCTTTCGGGACGTTCTGGATAACATTGGCGAAAAAATCTCCGCTCTCG
AGCGCAGTGCACATAGAAAACAGGCGCATGCCGCCCCGTTCGCGTCCTCT
TCTGCTTCGCAACTTGCGCCGCACGTGCTGCGTCGTGCGCGTCCAAACAT
CAATTCTTTCAACAACGCCATGTTTGACGCGCAGCAACACTTGTTTGCac
agcaacagcaacagttgcagcaacagttgcaacaacaacaacagcagcag
cagcaacaacaacaacaacaaaataTGTTTTTTCTTCAAAACGAGGACCG
ACTAGTGGAGGACGTGCTCAATGGCGGTTCGACGCTTGTGTCGCCGCCGC
CGCCCGCGCCTTTGGTGCCGAAGAACGTGTCGTCGGGTTTTCAGGATCTA
GATTTTTCTAGCGAGTGCTCGGACCGTCAAATATCTCCGGCCATCCCTCC
GCCCGCCGCCTCCGTCGCCCCGTCTCAGCGCTGTGTGGGTGCCTCATTCT
CCGACATGCCCAACCTCACCGCCGACGACGCCTTTTCAGCGTTTGAGGCG
CGTGCCGCGCGCGGCGCACAATCTCTTCTACCGCCGCCTTTCATTGTATA
G
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