Gchil10468.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10468.t1
Unique NameGchil10468.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length98
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:56430..57781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10468Gchil10468Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 56430..57781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10468.t1Gchil10468.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 56430..57781 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10468.t1.start1Gchil10468.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 56430..56432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10468.t1.CDS1Gchil10468.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 56430..56516 +
Gchil10468.t1.CDS2Gchil10468.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 56633..56653 +
Gchil10468.t1.CDS3Gchil10468.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 57406..57531 +
Gchil10468.t1.CDS4Gchil10468.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 57722..57781 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10468.t1.exon1Gchil10468.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 56430..56516 +
Gchil10468.t1.exon2Gchil10468.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 56633..56653 +
Gchil10468.t1.exon3Gchil10468.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 57406..57531 +
Gchil10468.t1.exon4Gchil10468.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 57722..57781 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10468.t1.intron1Gchil10468.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 56517..56632 +
Gchil10468.t1.intron2Gchil10468.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 56654..57405 +
Gchil10468.t1.intron3Gchil10468.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 57532..57721 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10468.t1.stop1Gchil10468.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 57779..57781 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10468.t1 ID=Gchil10468.t1|Name=Gchil10468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=98bp
MLASQRHRQRIHPRTHPITKPRTSTSQEPRNLRVKQGSRLVSKRCAQCTG
FVLYSNFACSFAQSGVGMQSLFTDTEELSCQNFTYVLRVEFLYSTTP*
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spliced messenger RNA

>Gchil10468.t1 ID=Gchil10468.t1|Name=Gchil10468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=294bp|location=Sequence derived from alignment at tig00000159_pilon:56430..57781+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGCTTCTCAGCGGCACCGGCAGCGTATACACCCAAGGACACATCC
AATCACCAAACCAAGAACTTCAACATCTCAAGAACCGCGGAACCTGCGAG
TAAAGCAAGGAAGTCGTCTTGTTTCGAAAAGGTGTGCCCAGTGCACGGGT
TTTGTGTTGTACAGTAACTTTGCGTGTTCTTTTGCCCAATCCGGTGTTGG
GATGCAGTCGCTATTTACGGACACAGAGGAACTGTCTTGCCAAAATTTCA
CGTATGTGCTGCGAGTGGAGTTCTTGTACAGTACCACGCCCTGA
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protein sequence of Gchil10468.t1

>Gchil10468.t1 ID=Gchil10468.t1|Name=Gchil10468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=98bp
MLASQRHRQRIHPRTHPITKPRTSTSQEPRNLRVKQGSRLVSKRCAQCTG
FVLYSNFACSFAQSGVGMQSLFTDTEELSCQNFTYVLRVEFLYSTTP*
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mRNA from alignment at tig00000159_pilon:56430..57781+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10468.t1 ID=Gchil10468.t1|Name=Gchil10468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1352bp|location=Sequence derived from alignment at tig00000159_pilon:56430..57781+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGCTTCTCAGCGGCACCGGCAGCGTATACACCCAAGGACACATCC
AATCACCAAACCAAGAACTTCAACATCTCAAGAACCGGTGCGTTCAAATC
CATGGTACAAAAAAGGGATTTCGGGCAGATGAAAGAACCAGCTGTGTCGA
TTCTCATTTGAATCTCATATGACTGTTGCTTCCTGCTTTCCGTTCAATAT
CAGCGGAACCTGCGAGTAAAGCAAGTACGCCGCTGAATGCGTCCGTAGTC
CTGAACCTCGAAGTCAAAGCTAACCCGCTACATTTTTCGGACTCGAGTGA
AAGCTGAATGCGGATCATATTGCTCTCCAATTTCTCGTACTTGAACCTTG
GCGATAGAAGTCCCATCTATGATACCAACCTTCAACATGTGCTTTGGAGT
CCACCCATTGATTTCACATACAAAGCTAAACTCCAAAAACCATAGCTTCG
AGAGAGGAATCCAGTTCCGTTTAGAGGACATCTACTGAGATTATTTCCAT
TCTCTCAGCGCATACAGATAGAAAGACTGCAAAAAGAAAGTAAAAAACAA
ttatttgttgctttcaagacagcgtttgcacgatctttatttttggtcag
gtaaaaagggtagagatgctctaccctttcgtgcagccagcagaaccagt
ctacaaatagagaatttcagaaaaacTGTTCCCAGGGCGGCTTGCCCGAA
CGGTGGGTTAACAGGAAAGATATCGTCACAAAGACGCCGGAAACACCCAA
ACGGTTCAAACGAAGGCGGGGGCTAGCTGCTGCAGCTTCAGAACGGCCAG
CGCTGAGCAGCATCAAAAAGTATGCGCATACCAGCGCCGGCCGCAGCCTG
GCAGATCGGCAATCGCTGCCTCTACAGCTGCCAAATAGATCGTCTTCTGT
GTTCCTTGAAATTCCAATCATTAGTCACCCATTCTGATGAACGGCGTCAT
AATCCCCGTTCCCCTCTGAAACTCAGGGAAGTCGTCTTGTTTCGAAAAGG
TGTGCCCAGTGCACGGGTTTTGTGTTGTACAGTAACTTTGCGTGTTCTTT
TGCCCAATCCGGTGTTGGGATGCAGTCGCTATTTACGGACACAGAGGAAC
TGGTGAGTCTTTAACAACGAAAAACTTTACAATCACACTTGGACATTGTG
ATACCAACGGTATAATTCGGCTCTTGTTTTCGTCTTATGACGCAGTGGAG
ACCGAGACCACAGCAGCAAGATTTCCGCCACAAGCCTGTCTGTGTGGGAA
AGATCAGATTTAACATTCTGACCTTTTTTTGTACAAAAGCAGTCTTGCCA
AAATTTCACGTATGTGCTGCGAGTGGAGTTCTTGTACAGTACCACGCCCT
GA
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Coding sequence (CDS) from alignment at tig00000159_pilon:56430..57781+

>Gchil10468.t1 ID=Gchil10468.t1|Name=Gchil10468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=294bp|location=Sequence derived from alignment at tig00000159_pilon:56430..57781+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGCTTCTCAGCGGCACCGGCAGCGTATACACCCAAGGACACATCC
AATCACCAAACCAAGAACTTCAACATCTCAAGAACCGCGGAACCTGCGAG
TAAAGCAAGGAAGTCGTCTTGTTTCGAAAAGGTGTGCCCAGTGCACGGGT
TTTGTGTTGTACAGTAACTTTGCGTGTTCTTTTGCCCAATCCGGTGTTGG
GATGCAGTCGCTATTTACGGACACAGAGGAACTGTCTTGCCAAAATTTCA
CGTATGTGCTGCGAGTGGAGTTCTTGTACAGTACCACGCCCTGA
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