Gchil10463.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10463.t1
Unique NameGchil10463.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length639
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:46291..48207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708989.1
PFAMsCTP_synth_N,GATase
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC00074
KEGG koko:K01937
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue2.71e-272
EggNOG OGsCOG0504@1|root,KOG2387@2759|Eukaryota
EC6.3.4.2
Description'de novo' CTP biosynthetic process
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10463Gchil10463Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 46291..48207 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10463.t1.stop1Gchil10463.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 46291..46293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10463.t1.CDS1Gchil10463.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 46291..48207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10463.t1.exon1Gchil10463.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 46291..48207 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10463.t1.start1Gchil10463.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 48205..48207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10463.t1Gchil10463.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 46291..48207 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10463.t1 ID=Gchil10463.t1|Name=Gchil10463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=639bp
MHHSALAGGASHVKFVLVSGGVISGIGKGLTASSLGVLLKCCGWRVTAIK
IDPYLNLDAGTMSPFEHGEVFVLNDGGEVDLDLGNYERFLDVTLSRDNNI
TTGKVYSQVLEKERKGEYLGKTVQVVPHITDAIQDWIMRVATTSDQNGLV
PEICVIELGGTIGDIESMPFVEALRQLRYNVGDVNFCSVFVSLVPILGVV
GEQKTKPTQHGVKQITSMGLSPQLIVCRSEVPLLPDTKKKLALFCQVAPD
AVASVHDVSNTYRIPMMLQEQGVCNLLIRTLQLVWRLPVRLEKWAEMANK
ADERRERVTICIVGKYTDLSDAYLSVVRALQHAGMAIGRLVNVTWVESTD
LESSNGAMPDIGRVAMVKARNGDPGSECNGSKSGTHSLSSSCSGSSNKAK
AGKEASELAWGSIKAADGILVPGGFGDRGVEGKMAAVRYARDHDVPFLGI
CLGMQLAVVESARRIFSNKEVNSEEINEKAEVKAIVYMPEVDKSKMGGTM
RLGARKTILRRNDCLAAWLYGTGEIYERHRHRYEVNPDIVERIENEDSLR
FVGVDCSGQRMEIVEDVKHRFFFGTQFHPEFTSRPGRPSPPFVGLMMAAA
GMQCERETIERAMRSIREQDPWGAPGDDDEGENSRAEG*
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spliced messenger RNA

>Gchil10463.t1 ID=Gchil10463.t1|Name=Gchil10463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at tig00000159_pilon:46291..48207- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCACAGCGCGCTCGCCGGCGGCGCCAGCCACGTCAAGTTCGTGCT
GGTTTCTGGCGGCGTTATCTCAGGCATTGGCAAGGGGCTCACCGCGTCTT
CGCTGGGCGTACTGCTCAAGTGCTGCGGATGGCGGGTTACTGCCATCAAG
ATCGACCCGTATCTCAACCTGGATGCCGGCACAATGTCCCCTTTCGAACA
CGGCGAGGTCTTCGTTCTGAACGACGGCGGTGAGGTGGACCTCGATTTGG
GCAATTACGAACGCTTCCTGGATGTCACGCTTTCTCGTGATAACAATATC
ACCACCGGCAAGGTGTACTCGCAGGTGCTTGAGAAGGAACGAAAGGGAGA
GTATCTCGGTAAGACCGTGCAGGTGGTGCCCCACATCACCGATGCTATTC
AGGATTGGATCATGCGTGTGGCCACTACATCGGATCAGAATGGTCTGGTA
CCGGAGATCTGTGTCATAGAGCTCGGCGGTACAATTGGCGACATTGAGTC
TATGCCATTTGTTGAGGCGCTCCGACAGCTTCGTTACAACGTCGGCGACG
TCAACTTTTGTTCGGTATTTGTGTCGCTGGTGCCCATCCTCGGCGTGGTT
GGAGAGCAAAAGACTAAACCCACGCAGCATGGCGTGAAACAAATCACATC
CATGGGGTTGTCGCCGCAGCTCATCGTGTGTCGTTCAGAAGTGCCGCTTC
TGCCAGACACCAAGAAGAAGCTGGCCTTGTTCTGCCAAGTGGCGCCAGAT
GCGGTGGCCTCCGTGCATGATGTGTCCAACACATACCGGATCCCTATGAT
GCTACAAGAACAAGGCGTGTGCAACCTGCTCATTCGCACGTTGCAGTTGG
TGTGGAGACTTCCCGTGCGGCTTGAAAAATGGGCGGAAATGGCAAACAAG
GCGGATGAAAGGCGGGAGCGTGTGACTATTTGCATCGTGGGCAAGTACAC
CGATCTGTCAGACGCGTATCTGTCGGTGGTGCGCGCTTTGCAACATGCGG
GCATGGCAATCGGACGACTGGTAAATGTGACGTGGGTAGAATCTACCGAC
CTTGAATCATCGAACGGGGCGATGCCAGACATTGGGCGCGTGGCGATGGT
CAAGGCAAGAAATGGCGATCCGGGCTCAGAGTGCAATGGGTCGAAATCAG
GGACGCATTCGCTGTCGAGCAGCTGCAGCGGCTCGAGCAACAAAGCCAAA
GCCGGTAAAGAGGCGAGCGAGTTGGCGTGGGGAAGCATCAAGGCAGCGGA
CGGAATCTTGGTGCCAGGCGGATTTGGAGACCGCGGTGTTGAAGGGAAGA
TGGCGGCTGTACGGTACGCGCGGGACCACGACGTGCCATTTTTGGGTATC
TGTTTGGGCATGCAGCTTGCTGTGGTAGAGTCGGCGCGGCGCATCTTCAG
CAATAAGGAGGTAAACTCGGAAGAGATCAACGAAAAGGCTGAGGTGAAGG
CGATTGTATACATGCCGGAGGTGGACAAGAGCAAGATGGGCGGGACGATG
CGATTGGGGGCACGCAAGACGATTCTGCGACGCAACGACTGCCTAGCGGC
TTGGCTGTATGGAACGGGGGAGATTTACGAGCGGCACCGGCACCGGTACG
AGGTGAATCCAGACATTGTGGAACGCATCGAGAATGAGGATAGCTTGCGA
TTTGTAGGGGTGGACTGCAGCGGGCAGCGCATGGAGATCGTGGAGGATGT
GAAGCACCGGTTCTTCTTCGGCACACAATTCCACCCTGAGTTCACCAGCC
GCCCGGGGCGGCCATCACCGCCGTTCGTAGGGCTCATGATGGCAGCGGCT
GGAATGCAGTGCGAGCGCGAGACCATCGAGCGCGCCATGCGCAGCATCCG
CGAACAAGACCCGTGGGGTGCGCCAGGCGACGATGATGAGGGAGAGAACT
CGCGCGCTGAGGGGTGA
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protein sequence of Gchil10463.t1

>Gchil10463.t1 ID=Gchil10463.t1|Name=Gchil10463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=639bp
MHHSALAGGASHVKFVLVSGGVISGIGKGLTASSLGVLLKCCGWRVTAIK
IDPYLNLDAGTMSPFEHGEVFVLNDGGEVDLDLGNYERFLDVTLSRDNNI
TTGKVYSQVLEKERKGEYLGKTVQVVPHITDAIQDWIMRVATTSDQNGLV
PEICVIELGGTIGDIESMPFVEALRQLRYNVGDVNFCSVFVSLVPILGVV
GEQKTKPTQHGVKQITSMGLSPQLIVCRSEVPLLPDTKKKLALFCQVAPD
AVASVHDVSNTYRIPMMLQEQGVCNLLIRTLQLVWRLPVRLEKWAEMANK
ADERRERVTICIVGKYTDLSDAYLSVVRALQHAGMAIGRLVNVTWVESTD
LESSNGAMPDIGRVAMVKARNGDPGSECNGSKSGTHSLSSSCSGSSNKAK
AGKEASELAWGSIKAADGILVPGGFGDRGVEGKMAAVRYARDHDVPFLGI
CLGMQLAVVESARRIFSNKEVNSEEINEKAEVKAIVYMPEVDKSKMGGTM
RLGARKTILRRNDCLAAWLYGTGEIYERHRHRYEVNPDIVERIENEDSLR
FVGVDCSGQRMEIVEDVKHRFFFGTQFHPEFTSRPGRPSPPFVGLMMAAA
GMQCERETIERAMRSIREQDPWGAPGDDDEGENSRAEG*
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mRNA from alignment at tig00000159_pilon:46291..48207-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10463.t1 ID=Gchil10463.t1|Name=Gchil10463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at tig00000159_pilon:46291..48207- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCACAGCGCGCTCGCCGGCGGCGCCAGCCACGTCAAGTTCGTGCT
GGTTTCTGGCGGCGTTATCTCAGGCATTGGCAAGGGGCTCACCGCGTCTT
CGCTGGGCGTACTGCTCAAGTGCTGCGGATGGCGGGTTACTGCCATCAAG
ATCGACCCGTATCTCAACCTGGATGCCGGCACAATGTCCCCTTTCGAACA
CGGCGAGGTCTTCGTTCTGAACGACGGCGGTGAGGTGGACCTCGATTTGG
GCAATTACGAACGCTTCCTGGATGTCACGCTTTCTCGTGATAACAATATC
ACCACCGGCAAGGTGTACTCGCAGGTGCTTGAGAAGGAACGAAAGGGAGA
GTATCTCGGTAAGACCGTGCAGGTGGTGCCCCACATCACCGATGCTATTC
AGGATTGGATCATGCGTGTGGCCACTACATCGGATCAGAATGGTCTGGTA
CCGGAGATCTGTGTCATAGAGCTCGGCGGTACAATTGGCGACATTGAGTC
TATGCCATTTGTTGAGGCGCTCCGACAGCTTCGTTACAACGTCGGCGACG
TCAACTTTTGTTCGGTATTTGTGTCGCTGGTGCCCATCCTCGGCGTGGTT
GGAGAGCAAAAGACTAAACCCACGCAGCATGGCGTGAAACAAATCACATC
CATGGGGTTGTCGCCGCAGCTCATCGTGTGTCGTTCAGAAGTGCCGCTTC
TGCCAGACACCAAGAAGAAGCTGGCCTTGTTCTGCCAAGTGGCGCCAGAT
GCGGTGGCCTCCGTGCATGATGTGTCCAACACATACCGGATCCCTATGAT
GCTACAAGAACAAGGCGTGTGCAACCTGCTCATTCGCACGTTGCAGTTGG
TGTGGAGACTTCCCGTGCGGCTTGAAAAATGGGCGGAAATGGCAAACAAG
GCGGATGAAAGGCGGGAGCGTGTGACTATTTGCATCGTGGGCAAGTACAC
CGATCTGTCAGACGCGTATCTGTCGGTGGTGCGCGCTTTGCAACATGCGG
GCATGGCAATCGGACGACTGGTAAATGTGACGTGGGTAGAATCTACCGAC
CTTGAATCATCGAACGGGGCGATGCCAGACATTGGGCGCGTGGCGATGGT
CAAGGCAAGAAATGGCGATCCGGGCTCAGAGTGCAATGGGTCGAAATCAG
GGACGCATTCGCTGTCGAGCAGCTGCAGCGGCTCGAGCAACAAAGCCAAA
GCCGGTAAAGAGGCGAGCGAGTTGGCGTGGGGAAGCATCAAGGCAGCGGA
CGGAATCTTGGTGCCAGGCGGATTTGGAGACCGCGGTGTTGAAGGGAAGA
TGGCGGCTGTACGGTACGCGCGGGACCACGACGTGCCATTTTTGGGTATC
TGTTTGGGCATGCAGCTTGCTGTGGTAGAGTCGGCGCGGCGCATCTTCAG
CAATAAGGAGGTAAACTCGGAAGAGATCAACGAAAAGGCTGAGGTGAAGG
CGATTGTATACATGCCGGAGGTGGACAAGAGCAAGATGGGCGGGACGATG
CGATTGGGGGCACGCAAGACGATTCTGCGACGCAACGACTGCCTAGCGGC
TTGGCTGTATGGAACGGGGGAGATTTACGAGCGGCACCGGCACCGGTACG
AGGTGAATCCAGACATTGTGGAACGCATCGAGAATGAGGATAGCTTGCGA
TTTGTAGGGGTGGACTGCAGCGGGCAGCGCATGGAGATCGTGGAGGATGT
GAAGCACCGGTTCTTCTTCGGCACACAATTCCACCCTGAGTTCACCAGCC
GCCCGGGGCGGCCATCACCGCCGTTCGTAGGGCTCATGATGGCAGCGGCT
GGAATGCAGTGCGAGCGCGAGACCATCGAGCGCGCCATGCGCAGCATCCG
CGAACAAGACCCGTGGGGTGCGCCAGGCGACGATGATGAGGGAGAGAACT
CGCGCGCTGAGGGGTGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:46291..48207-

>Gchil10463.t1 ID=Gchil10463.t1|Name=Gchil10463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1917bp|location=Sequence derived from alignment at tig00000159_pilon:46291..48207- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCACAGCGCGCTCGCCGGCGGCGCCAGCCACGTCAAGTTCGTGCT
GGTTTCTGGCGGCGTTATCTCAGGCATTGGCAAGGGGCTCACCGCGTCTT
CGCTGGGCGTACTGCTCAAGTGCTGCGGATGGCGGGTTACTGCCATCAAG
ATCGACCCGTATCTCAACCTGGATGCCGGCACAATGTCCCCTTTCGAACA
CGGCGAGGTCTTCGTTCTGAACGACGGCGGTGAGGTGGACCTCGATTTGG
GCAATTACGAACGCTTCCTGGATGTCACGCTTTCTCGTGATAACAATATC
ACCACCGGCAAGGTGTACTCGCAGGTGCTTGAGAAGGAACGAAAGGGAGA
GTATCTCGGTAAGACCGTGCAGGTGGTGCCCCACATCACCGATGCTATTC
AGGATTGGATCATGCGTGTGGCCACTACATCGGATCAGAATGGTCTGGTA
CCGGAGATCTGTGTCATAGAGCTCGGCGGTACAATTGGCGACATTGAGTC
TATGCCATTTGTTGAGGCGCTCCGACAGCTTCGTTACAACGTCGGCGACG
TCAACTTTTGTTCGGTATTTGTGTCGCTGGTGCCCATCCTCGGCGTGGTT
GGAGAGCAAAAGACTAAACCCACGCAGCATGGCGTGAAACAAATCACATC
CATGGGGTTGTCGCCGCAGCTCATCGTGTGTCGTTCAGAAGTGCCGCTTC
TGCCAGACACCAAGAAGAAGCTGGCCTTGTTCTGCCAAGTGGCGCCAGAT
GCGGTGGCCTCCGTGCATGATGTGTCCAACACATACCGGATCCCTATGAT
GCTACAAGAACAAGGCGTGTGCAACCTGCTCATTCGCACGTTGCAGTTGG
TGTGGAGACTTCCCGTGCGGCTTGAAAAATGGGCGGAAATGGCAAACAAG
GCGGATGAAAGGCGGGAGCGTGTGACTATTTGCATCGTGGGCAAGTACAC
CGATCTGTCAGACGCGTATCTGTCGGTGGTGCGCGCTTTGCAACATGCGG
GCATGGCAATCGGACGACTGGTAAATGTGACGTGGGTAGAATCTACCGAC
CTTGAATCATCGAACGGGGCGATGCCAGACATTGGGCGCGTGGCGATGGT
CAAGGCAAGAAATGGCGATCCGGGCTCAGAGTGCAATGGGTCGAAATCAG
GGACGCATTCGCTGTCGAGCAGCTGCAGCGGCTCGAGCAACAAAGCCAAA
GCCGGTAAAGAGGCGAGCGAGTTGGCGTGGGGAAGCATCAAGGCAGCGGA
CGGAATCTTGGTGCCAGGCGGATTTGGAGACCGCGGTGTTGAAGGGAAGA
TGGCGGCTGTACGGTACGCGCGGGACCACGACGTGCCATTTTTGGGTATC
TGTTTGGGCATGCAGCTTGCTGTGGTAGAGTCGGCGCGGCGCATCTTCAG
CAATAAGGAGGTAAACTCGGAAGAGATCAACGAAAAGGCTGAGGTGAAGG
CGATTGTATACATGCCGGAGGTGGACAAGAGCAAGATGGGCGGGACGATG
CGATTGGGGGCACGCAAGACGATTCTGCGACGCAACGACTGCCTAGCGGC
TTGGCTGTATGGAACGGGGGAGATTTACGAGCGGCACCGGCACCGGTACG
AGGTGAATCCAGACATTGTGGAACGCATCGAGAATGAGGATAGCTTGCGA
TTTGTAGGGGTGGACTGCAGCGGGCAGCGCATGGAGATCGTGGAGGATGT
GAAGCACCGGTTCTTCTTCGGCACACAATTCCACCCTGAGTTCACCAGCC
GCCCGGGGCGGCCATCACCGCCGTTCGTAGGGCTCATGATGGCAGCGGCT
GGAATGCAGTGCGAGCGCGAGACCATCGAGCGCGCCATGCGCAGCATCCG
CGAACAAGACCCGTGGGGTGCGCCAGGCGACGATGATGAGGGAGAGAACT
CGCGCGCTGAGGGGTGA
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