Gchil1044.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1044.t1
Unique NameGchil1044.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length103
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:107678..107986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5507.FOXG_00216P0
Preferred nameRPF2
PFAMsBrix
Max annot lvl4751|Fungi
KEGG koko:K14847
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0008312,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902626,GO:1990904
Evalue1.28e-09
EggNOG OGsCOG5106@1|root,KOG3031@2759|Eukaryota,39R5N@33154|Opisthokonta,3NV15@4751|Fungi,3QMY0@4890|Ascomycota,213UT@147550|Sordariomycetes,3TG6K@5125|Hypocreales,1FKTV@110618|Nectriaceae
DescriptionRibosome biogenesis protein RPF2
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1044Gchil1044Gracilaria chilensis NLEC103_M9 malegenetig00000172_pilon 107678..107986 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1044.t1.start1Gchil1044.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000172_pilon 107678..107680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1044.t1.CDS1Gchil1044.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 107678..107986 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1044.t1.exon1Gchil1044.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 107678..107986 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1044.t1.stop1Gchil1044.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000172_pilon 107984..107986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1044.t1Gchil1044.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000172_pilon 107678..107986 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1044.t1 ID=Gchil1044.t1|Name=Gchil1044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=103bp
MNSDMKRPRDPAFARKEKNVSHDSMGDKKGRIHLGRQDLIKLALARMKGL
GRQRQNVEAVVDGTDDANTEKVEEILKQAEIKLGDIEDIDPASKRRKAEP
QL*
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spliced messenger RNA

>Gchil1044.t1 ID=Gchil1044.t1|Name=Gchil1044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp|location=Sequence derived from alignment at tig00000172_pilon:107678..107986+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAGCGATATGAAACGACCTCGAGACCCAGCATTTGCGCGTAAGGA
GAAGAACGTTTCTCACGACAGTATGGGGGATAAAAAGGGTCGCATTCACC
TTGGCAGACAAGACCTTATCAAGCTTGCGCTTGCTCGCATGAAAGGCTTA
GGGAGGCAGCGACAAAATGTGGAGGCTGTTGTTGATGGTACCGATGATGC
CAATACCGAAAAAGTTGAAGAGATTTTGAAGCAAGCAGAAATCAAATTGG
GTGACATTGAAGACATTGATCCGGCAAGCAAACGTCGGAAAGCCGAACCC
CAATTATAA
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protein sequence of Gchil1044.t1

>Gchil1044.t1 ID=Gchil1044.t1|Name=Gchil1044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=103bp
MNSDMKRPRDPAFARKEKNVSHDSMGDKKGRIHLGRQDLIKLALARMKGL
GRQRQNVEAVVDGTDDANTEKVEEILKQAEIKLGDIEDIDPASKRRKAEP
QL*
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mRNA from alignment at tig00000172_pilon:107678..107986+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1044.t1 ID=Gchil1044.t1|Name=Gchil1044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp|location=Sequence derived from alignment at tig00000172_pilon:107678..107986+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATAGCGATATGAAACGACCTCGAGACCCAGCATTTGCGCGTAAGGA
GAAGAACGTTTCTCACGACAGTATGGGGGATAAAAAGGGTCGCATTCACC
TTGGCAGACAAGACCTTATCAAGCTTGCGCTTGCTCGCATGAAAGGCTTA
GGGAGGCAGCGACAAAATGTGGAGGCTGTTGTTGATGGTACCGATGATGC
CAATACCGAAAAAGTTGAAGAGATTTTGAAGCAAGCAGAAATCAAATTGG
GTGACATTGAAGACATTGATCCGGCAAGCAAACGTCGGAAAGCCGAACCC
CAATTATAA
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Coding sequence (CDS) from alignment at tig00000172_pilon:107678..107986+

>Gchil1044.t1 ID=Gchil1044.t1|Name=Gchil1044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=309bp|location=Sequence derived from alignment at tig00000172_pilon:107678..107986+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATAGCGATATGAAACGACCTCGAGACCCAGCATTTGCGCGTAAGGA
GAAGAACGTTTCTCACGACAGTATGGGGGATAAAAAGGGTCGCATTCACC
TTGGCAGACAAGACCTTATCAAGCTTGCGCTTGCTCGCATGAAAGGCTTA
GGGAGGCAGCGACAAAATGTGGAGGCTGTTGTTGATGGTACCGATGATGC
CAATACCGAAAAAGTTGAAGAGATTTTGAAGCAAGCAGAAATCAAATTGG
GTGACATTGAAGACATTGATCCGGCAAGCAAACGTCGGAAAGCCGAACCC
CAATTATAA
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