Gchil1042.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1042.t1
Unique NameGchil1042.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:67484..68683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1042Gchil1042Gracilaria chilensis NLEC103_M9 malegenetig00000172_pilon 67484..68683 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1042.t1.stop1Gchil1042.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000172_pilon 67484..67486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1042.t1.CDS1Gchil1042.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 67484..68683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1042.t1.exon1Gchil1042.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 67484..68683 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1042.t1.start1Gchil1042.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000172_pilon 68681..68683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1042.t1Gchil1042.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000172_pilon 67484..68683 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1042.t1 ID=Gchil1042.t1|Name=Gchil1042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=400bp
MSCVSRCVVVLLALVCGCSAAVVPSVRQNARDMARRAAAVAKAAAAARRV
GGRGGDGGNALAIGADVSGGGGGGNNAVANGAAGLVIGDGSINGQLFNSA
LAGDGGGGGEGGGDGGNGGDATAVGGSVEGGGGGGDGGGGNAVANGATGT
VIGGGSINGEFNNAAVGGGGGDGSGGDGSDGGDGGNGGSALAIGGSVGGG
DGGGDGGGGNAVANGAAGTVIGDGSINGVFNNAAVGGGGGDGGEGVNGGD
GGAGGDAVAIGGSVGGDGGGGGGGGGGNAVGNGAVGTVIGDGSINGEFNN
VAVGGSGGNGGDGVNGGDGGRGGDAVAIGGSVGGGGGGGGGGGNTVGNGA
AGTVIGDGSINGAFSNTAIGGRGGDGGSGVNGGDGGAGGSAVAVGGSVG*
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spliced messenger RNA

>Gchil1042.t1 ID=Gchil1042.t1|Name=Gchil1042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000172_pilon:67484..68683- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTGTGTTTCCCGCTGTGTGGTGGTGCTACTGGCGCTGGTGTGCGG
CTGCAGCGCGGCGGTGGTGCCGTCGGTGCGGCAGAACGCGCGCGACATGG
CGCGACGCGCGGCGGCCGTGGCGAAGGCAGCGGCGGCGGCGCGCCGTGTT
GGAGGGCGCGGCGGCGACGGCGGCAACGCACTGGCCATCGGGGCCGACGT
GAGCGGCGGCGGAGGAGGCGGGAATAACGCGGTGGCCAACGGCGCGGCCG
GACTGGTGATTGGCGACGGCAGTATCAACGGACAGTTGTTCAATTCGGCG
TTGGCCGGCGACGGCGGCGGCGGCGGTGAAGGCGGCGGGGACGGCGGCAA
CGGCGGCGACGCCACGGCGGTTGGCGGCAGCGTGGAGGGTGGCGGAGGCG
GCGGCGATGGCGGCGGTGGGAATGCAGTGGCTAACGGGGCGACCGGCACG
GTGATTGGCGGTGGCAGCATCAATGGGGAGTTCAACAATGCGGCAGTGGG
TGGCGGCGGCGGCGATGGCTCCGGTGGAGACGGTTCGGACGGTGGCGACG
GCGGCAACGGCGGGAGCGCGCTCGCGATCGGAGGCAGTGTGGGCGGAGGT
GACGGCGGCGGCGATGGCGGTGGCGGTAACGCAGTGGCCAATGGAGCGGC
CGGCACAGTGATTGGCGACGGTAGTATCAACGGAGTGTTCAACAACGCGG
CGGTGGGCGGCGGCGGGGGTGACGGTGGCGAGGGCGTGAACGGCGGGGAT
GGGGGCGCTGGAGGCGACGCGGTGGCCATTGGCGGCAGCGTGGGCGGCGA
CGGCGGCGGAGGAGGCGGCGGCGGCGGCGGTAACGCAGTGGGCAACGGGG
CGGTGGGCACGGTGATCGGAGACGGCAGCATCAACGGAGAGTTTAACAAC
GTGGCGGTGGGCGGTTCCGGCGGCAACGGCGGCGACGGGGTGAACGGCGG
TGACGGCGGGCGTGGCGGGGACGCGGTGGCAATTGGGGGCAGCGTGGGCG
GCGGCGGCGGTGGAGGAGGCGGCGGCGGCAACACGGTGGGCAACGGGGCG
GCCGGCACGGTGATTGGGGACGGCAGCATCAACGGGGCGTTCTCCAACAC
GGCGATCGGGGGCAGAGGCGGGGACGGCGGCAGCGGGGTGAACGGCGGGG
ACGGCGGGGCCGGCGGCAGCGCCGTGGCGGTCGGCGGCAGCGTGGGGTAG
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protein sequence of Gchil1042.t1

>Gchil1042.t1 ID=Gchil1042.t1|Name=Gchil1042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=400bp
MSCVSRCVVVLLALVCGCSAAVVPSVRQNARDMARRAAAVAKAAAAARRV
GGRGGDGGNALAIGADVSGGGGGGNNAVANGAAGLVIGDGSINGQLFNSA
LAGDGGGGGEGGGDGGNGGDATAVGGSVEGGGGGGDGGGGNAVANGATGT
VIGGGSINGEFNNAAVGGGGGDGSGGDGSDGGDGGNGGSALAIGGSVGGG
DGGGDGGGGNAVANGAAGTVIGDGSINGVFNNAAVGGGGGDGGEGVNGGD
GGAGGDAVAIGGSVGGDGGGGGGGGGGNAVGNGAVGTVIGDGSINGEFNN
VAVGGSGGNGGDGVNGGDGGRGGDAVAIGGSVGGGGGGGGGGGNTVGNGA
AGTVIGDGSINGAFSNTAIGGRGGDGGSGVNGGDGGAGGSAVAVGGSVG*
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mRNA from alignment at tig00000172_pilon:67484..68683-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1042.t1 ID=Gchil1042.t1|Name=Gchil1042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000172_pilon:67484..68683- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTGTGTTTCCCGCTGTGTGGTGGTGCTACTGGCGCTGGTGTGCGG
CTGCAGCGCGGCGGTGGTGCCGTCGGTGCGGCAGAACGCGCGCGACATGG
CGCGACGCGCGGCGGCCGTGGCGAAGGCAGCGGCGGCGGCGCGCCGTGTT
GGAGGGCGCGGCGGCGACGGCGGCAACGCACTGGCCATCGGGGCCGACGT
GAGCGGCGGCGGAGGAGGCGGGAATAACGCGGTGGCCAACGGCGCGGCCG
GACTGGTGATTGGCGACGGCAGTATCAACGGACAGTTGTTCAATTCGGCG
TTGGCCGGCGACGGCGGCGGCGGCGGTGAAGGCGGCGGGGACGGCGGCAA
CGGCGGCGACGCCACGGCGGTTGGCGGCAGCGTGGAGGGTGGCGGAGGCG
GCGGCGATGGCGGCGGTGGGAATGCAGTGGCTAACGGGGCGACCGGCACG
GTGATTGGCGGTGGCAGCATCAATGGGGAGTTCAACAATGCGGCAGTGGG
TGGCGGCGGCGGCGATGGCTCCGGTGGAGACGGTTCGGACGGTGGCGACG
GCGGCAACGGCGGGAGCGCGCTCGCGATCGGAGGCAGTGTGGGCGGAGGT
GACGGCGGCGGCGATGGCGGTGGCGGTAACGCAGTGGCCAATGGAGCGGC
CGGCACAGTGATTGGCGACGGTAGTATCAACGGAGTGTTCAACAACGCGG
CGGTGGGCGGCGGCGGGGGTGACGGTGGCGAGGGCGTGAACGGCGGGGAT
GGGGGCGCTGGAGGCGACGCGGTGGCCATTGGCGGCAGCGTGGGCGGCGA
CGGCGGCGGAGGAGGCGGCGGCGGCGGCGGTAACGCAGTGGGCAACGGGG
CGGTGGGCACGGTGATCGGAGACGGCAGCATCAACGGAGAGTTTAACAAC
GTGGCGGTGGGCGGTTCCGGCGGCAACGGCGGCGACGGGGTGAACGGCGG
TGACGGCGGGCGTGGCGGGGACGCGGTGGCAATTGGGGGCAGCGTGGGCG
GCGGCGGCGGTGGAGGAGGCGGCGGCGGCAACACGGTGGGCAACGGGGCG
GCCGGCACGGTGATTGGGGACGGCAGCATCAACGGGGCGTTCTCCAACAC
GGCGATCGGGGGCAGAGGCGGGGACGGCGGCAGCGGGGTGAACGGCGGGG
ACGGCGGGGCCGGCGGCAGCGCCGTGGCGGTCGGCGGCAGCGTGGGGTAG
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Coding sequence (CDS) from alignment at tig00000172_pilon:67484..68683-

>Gchil1042.t1 ID=Gchil1042.t1|Name=Gchil1042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00000172_pilon:67484..68683- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTGTGTTTCCCGCTGTGTGGTGGTGCTACTGGCGCTGGTGTGCGG
CTGCAGCGCGGCGGTGGTGCCGTCGGTGCGGCAGAACGCGCGCGACATGG
CGCGACGCGCGGCGGCCGTGGCGAAGGCAGCGGCGGCGGCGCGCCGTGTT
GGAGGGCGCGGCGGCGACGGCGGCAACGCACTGGCCATCGGGGCCGACGT
GAGCGGCGGCGGAGGAGGCGGGAATAACGCGGTGGCCAACGGCGCGGCCG
GACTGGTGATTGGCGACGGCAGTATCAACGGACAGTTGTTCAATTCGGCG
TTGGCCGGCGACGGCGGCGGCGGCGGTGAAGGCGGCGGGGACGGCGGCAA
CGGCGGCGACGCCACGGCGGTTGGCGGCAGCGTGGAGGGTGGCGGAGGCG
GCGGCGATGGCGGCGGTGGGAATGCAGTGGCTAACGGGGCGACCGGCACG
GTGATTGGCGGTGGCAGCATCAATGGGGAGTTCAACAATGCGGCAGTGGG
TGGCGGCGGCGGCGATGGCTCCGGTGGAGACGGTTCGGACGGTGGCGACG
GCGGCAACGGCGGGAGCGCGCTCGCGATCGGAGGCAGTGTGGGCGGAGGT
GACGGCGGCGGCGATGGCGGTGGCGGTAACGCAGTGGCCAATGGAGCGGC
CGGCACAGTGATTGGCGACGGTAGTATCAACGGAGTGTTCAACAACGCGG
CGGTGGGCGGCGGCGGGGGTGACGGTGGCGAGGGCGTGAACGGCGGGGAT
GGGGGCGCTGGAGGCGACGCGGTGGCCATTGGCGGCAGCGTGGGCGGCGA
CGGCGGCGGAGGAGGCGGCGGCGGCGGCGGTAACGCAGTGGGCAACGGGG
CGGTGGGCACGGTGATCGGAGACGGCAGCATCAACGGAGAGTTTAACAAC
GTGGCGGTGGGCGGTTCCGGCGGCAACGGCGGCGACGGGGTGAACGGCGG
TGACGGCGGGCGTGGCGGGGACGCGGTGGCAATTGGGGGCAGCGTGGGCG
GCGGCGGCGGTGGAGGAGGCGGCGGCGGCAACACGGTGGGCAACGGGGCG
GCCGGCACGGTGATTGGGGACGGCAGCATCAACGGGGCGTTCTCCAACAC
GGCGATCGGGGGCAGAGGCGGGGACGGCGGCAGCGGGGTGAACGGCGGGG
ACGGCGGGGCCGGCGGCAGCGCCGTGGCGGTCGGCGGCAGCGTGGGGTAG
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