Gchil10341.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10341.t1
Unique NameGchil10341.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000031_piloncontigtig00000031_pilon:416491..417039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10341Gchil10341Gracilaria chilensis NLEC103_M9 malegenetig00000031_pilon 416491..417039 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10341.t1.start1Gchil10341.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000031_pilon 416491..416493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10341.t1.CDS1Gchil10341.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 416491..417039 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10341.t1.exon1Gchil10341.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 416491..417039 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10341.t1.stop1Gchil10341.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000031_pilon 417037..417039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10341.t1Gchil10341.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000031_pilon 416491..417039 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10341.t1 ID=Gchil10341.t1|Name=Gchil10341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=183bp
MVILGKSLLRVTLCAYCFSEVFYVSLHIQLTPKISPRFQTLGMQFVSFVN
ANCDVDVVIANSTQFVSLMLKLVNNDTHGAPSFSEKLRGFRYTVLSDLAL
RVPSVIHDQSVPLQLFLTGSQSRTHPQDIRTAVFQALFTLSRIVSFVPTD
KIEFRTLVVSTLVNPIEDEEDISMTAESAAVH*
back to top

spliced messenger RNA

>Gchil10341.t1 ID=Gchil10341.t1|Name=Gchil10341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000031_pilon:416491..417039+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATTCTCGGTAAAAGTCTGCTTCGAGTCACTCTTTGTGCATACTG
TTTCTCAGAGGTGTTTTATGTGTCTCTACATATTCAGTTAACGCCGAAAA
TTTCGCCAAGATTTCAAACGTTGGGCATGCAATTTGTGTCGTTTGTGAAC
GCCAATTGTGACGTAGATGTGGTGATAGCCAATTCGACTCAGTTTGTATC
GCTCATGCTGAAGCTAGTAAACAATGATACTCACGGCGCTCCATCGTTTT
CAGAAAAGCTCCGCGGCTTTCGGTACACCGTTTTGTCTGATTTGGCGTTA
CGAGTTCCGTCGGTGATACACGACCAATCTGTGCCACTACAGCTGTTTCT
CACTGGTTCTCAATCGAGAACGCATCCGCAAGATATCAGAACTGCCGTAT
TTCAGGCGCTTTTCACCCTCTCGCGCATTGTGAGCTTTGTGCCCACCGAC
AAAATCGAGTTCCGAACGCTTGTTGTTTCCACTCTCGTGAACCCGATCGA
AGATGAGGAAGATATATCCATGACGGCCGAATCGGCTGCTGTACATTAG
back to top

protein sequence of Gchil10341.t1

>Gchil10341.t1 ID=Gchil10341.t1|Name=Gchil10341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=183bp
MVILGKSLLRVTLCAYCFSEVFYVSLHIQLTPKISPRFQTLGMQFVSFVN
ANCDVDVVIANSTQFVSLMLKLVNNDTHGAPSFSEKLRGFRYTVLSDLAL
RVPSVIHDQSVPLQLFLTGSQSRTHPQDIRTAVFQALFTLSRIVSFVPTD
KIEFRTLVVSTLVNPIEDEEDISMTAESAAVH*
back to top

mRNA from alignment at tig00000031_pilon:416491..417039+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10341.t1 ID=Gchil10341.t1|Name=Gchil10341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000031_pilon:416491..417039+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATTCTCGGTAAAAGTCTGCTTCGAGTCACTCTTTGTGCATACTG
TTTCTCAGAGGTGTTTTATGTGTCTCTACATATTCAGTTAACGCCGAAAA
TTTCGCCAAGATTTCAAACGTTGGGCATGCAATTTGTGTCGTTTGTGAAC
GCCAATTGTGACGTAGATGTGGTGATAGCCAATTCGACTCAGTTTGTATC
GCTCATGCTGAAGCTAGTAAACAATGATACTCACGGCGCTCCATCGTTTT
CAGAAAAGCTCCGCGGCTTTCGGTACACCGTTTTGTCTGATTTGGCGTTA
CGAGTTCCGTCGGTGATACACGACCAATCTGTGCCACTACAGCTGTTTCT
CACTGGTTCTCAATCGAGAACGCATCCGCAAGATATCAGAACTGCCGTAT
TTCAGGCGCTTTTCACCCTCTCGCGCATTGTGAGCTTTGTGCCCACCGAC
AAAATCGAGTTCCGAACGCTTGTTGTTTCCACTCTCGTGAACCCGATCGA
AGATGAGGAAGATATATCCATGACGGCCGAATCGGCTGCTGTACATTAG
back to top

Coding sequence (CDS) from alignment at tig00000031_pilon:416491..417039+

>Gchil10341.t1 ID=Gchil10341.t1|Name=Gchil10341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00000031_pilon:416491..417039+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATTCTCGGTAAAAGTCTGCTTCGAGTCACTCTTTGTGCATACTG
TTTCTCAGAGGTGTTTTATGTGTCTCTACATATTCAGTTAACGCCGAAAA
TTTCGCCAAGATTTCAAACGTTGGGCATGCAATTTGTGTCGTTTGTGAAC
GCCAATTGTGACGTAGATGTGGTGATAGCCAATTCGACTCAGTTTGTATC
GCTCATGCTGAAGCTAGTAAACAATGATACTCACGGCGCTCCATCGTTTT
CAGAAAAGCTCCGCGGCTTTCGGTACACCGTTTTGTCTGATTTGGCGTTA
CGAGTTCCGTCGGTGATACACGACCAATCTGTGCCACTACAGCTGTTTCT
CACTGGTTCTCAATCGAGAACGCATCCGCAAGATATCAGAACTGCCGTAT
TTCAGGCGCTTTTCACCCTCTCGCGCATTGTGAGCTTTGTGCCCACCGAC
AAAATCGAGTTCCGAACGCTTGTTGTTTCCACTCTCGTGAACCCGATCGA
AGATGAGGAAGATATATCCATGACGGCCGAATCGGCTGCTGTACATTAG
back to top