Gchil10339.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10339.t1
Unique NameGchil10339.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000031_piloncontigtig00000031_pilon:335407..336784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10339Gchil10339Gracilaria chilensis NLEC103_M9 malegenetig00000031_pilon 335407..336784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10339.t1Gchil10339.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000031_pilon 335407..336784 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10339.t1.start1Gchil10339.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000031_pilon 335407..335409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10339.t1.CDS1Gchil10339.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 335407..335443 +
Gchil10339.t1.CDS2Gchil10339.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 335514..336784 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10339.t1.exon1Gchil10339.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 335407..335443 +
Gchil10339.t1.exon2Gchil10339.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 335514..336784 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10339.t1.intron1Gchil10339.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000031_pilon 335444..335513 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10339.t1.stop1Gchil10339.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000031_pilon 336782..336784 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10339.t1 ID=Gchil10339.t1|Name=Gchil10339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=436bp
MTVPHNKITSTASFPLLNDLDGPYGPQCWDRRTFPYIQCEGECHPYNLRI
HRGCQQQRQFGCHYARCEGRNHFTCALTPEAAAQTNCEYGQIYVKSVSLQ
QNRPVDFQLAVNLPGRDIDVVLLIDASSSTRPRLNAVKNQLVSFVRQLSG
RARVAVAIYGGEDSFDETGMKVLSAASEDVQLALNALESIPTFPDGVRTT
LTALHSVVTSQELSLLRERSMIVLLGDTPGREPECRYQLSRSAISNELYG
FTSGFSVIPVSLGGVGLDAALAPISPCSNGYGSQDPQPVAAGQASNLAEQ
TKGEVIQSITTSNLFDAVDRVRRNPARTHQAKPGAEIYISTASVEPVNQP
YYPRQERINGCGDRITTSVTGVPRYVSEPFLNTGSLRLALAQGACRRGGF
ECQIRIMDHVRGYESMSHWSRPIVNYKKISIRACM*
back to top

spliced messenger RNA

>Gchil10339.t1 ID=Gchil10339.t1|Name=Gchil10339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000031_pilon:335407..336784+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTCCCGCATAACAAAATAACATCCACCGCAAGTTTCCCGCTTCT
AAATGATTTGGACGGTCCCTATGGCCCACAATGTTGGGATAGAAGAACGT
TCCCATACATCCAGTGCGAAGGGGAATGTCATCCATATAATCTACGCATT
CACAGAGGTTGCCAACAACAACGACAGTTTGGATGCCACTATGCAAGATG
TGAAGGGCGCAACCACTTCACATGCGCTCTAACTCCGGAAGCGGCAGCTC
AAACTAACTGTGAGTATGGGCAAATATATGTCAAGTCTGTTTCCCTTCAG
CAAAACCGTCCTGTGGATTTCCAGCTTGCTGTCAATCTGCCCGGTCGTGA
TATTGATGTCGTGCTTCTTATCGATGCGAGCTCCTCCACAAGACCTCGCC
TTAATGCCGTCAAGAACCAGCTGGTCTCATTTGTGAGACAGCTTAGTGGA
AGAGCTCGCGTTGCTGTGGCCATCTATGGTGGAGAAGACTCCTTTGACGA
AACCGGAATGAAGGTGCTGTCTGCAGCTAGTGAGGATGTGCAACTAGCGT
TGAATGCTCTTGAGAGTATTCCCACTTTCCCAGATGGCGTGCGCACGACG
CTAACTGCTTTGCACTCAGTAGTAACTTCTCAGGAGCTGTCACTTCTTCG
AGAGCGCAGCATGATTGTACTCCTTGGAGATACACCCGGGCGAGAACCGG
AGTGCCGATACCAGCTTTCTCGAAGTGCCATTTCAAACGAATTGTACGGG
TTTACTTCTGGATTCTCGGTGATACCGGTAAGCCTCGGTGGGGTGGGATT
GGACGCGGCACTAGCTCCAATTTCACCATGTTCAAATGGGTATGGCAGTC
AAGACCCGCAACCGGTAGCGGCTGGTCAGGCGAGCAATCTAGCAGAACAA
ACCAAGGGCGAGGTGATACAGTCGATCACGACAAGCAATCTGTTTGATGC
CGTTGACCGCGTAAGGAGAAACCCTGCCCGAACTCACCAGGCCAAACCAG
GCGCGGAAATCTACATTTCCACCGCCAGCGTTGAGCCCGTCAATCAGCCT
TACTACCCTCGCCAGGAGCGCATTAACGGATGTGGAGATCGTATTACTAC
AAGCGTGACTGGAGTTCCAAGATATGTAAGCGAGCCTTTTCTAAATACCG
GCAGTTTGAGACTTGCCCTGGCACAGGGGGCTTGTAGGAGAGGTGGTTTC
GAATGTCAAATTCGGATTATGGATCATGTGCGTGGGTACGAATCTATGAG
TCATTGGTCGAGACCGATTGTGAACTACAAAAAGATTAGCATTCGCGCAT
GCATGTGA
back to top

protein sequence of Gchil10339.t1

>Gchil10339.t1 ID=Gchil10339.t1|Name=Gchil10339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=436bp
MTVPHNKITSTASFPLLNDLDGPYGPQCWDRRTFPYIQCEGECHPYNLRI
HRGCQQQRQFGCHYARCEGRNHFTCALTPEAAAQTNCEYGQIYVKSVSLQ
QNRPVDFQLAVNLPGRDIDVVLLIDASSSTRPRLNAVKNQLVSFVRQLSG
RARVAVAIYGGEDSFDETGMKVLSAASEDVQLALNALESIPTFPDGVRTT
LTALHSVVTSQELSLLRERSMIVLLGDTPGREPECRYQLSRSAISNELYG
FTSGFSVIPVSLGGVGLDAALAPISPCSNGYGSQDPQPVAAGQASNLAEQ
TKGEVIQSITTSNLFDAVDRVRRNPARTHQAKPGAEIYISTASVEPVNQP
YYPRQERINGCGDRITTSVTGVPRYVSEPFLNTGSLRLALAQGACRRGGF
ECQIRIMDHVRGYESMSHWSRPIVNYKKISIRACM*
back to top

mRNA from alignment at tig00000031_pilon:335407..336784+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10339.t1 ID=Gchil10339.t1|Name=Gchil10339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1378bp|location=Sequence derived from alignment at tig00000031_pilon:335407..336784+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGTCCCGCATAACAAAATAACATCCACCGCAAGTAAGCTCTATGA
TGAACATATCGAATTTCTCATCGTTCGCCTTCTCTATCCTCCTTGTTTGC
GTTTCAGGTTTCCCGCTTCTAAATGATTTGGACGGTCCCTATGGCCCACA
ATGTTGGGATAGAAGAACGTTCCCATACATCCAGTGCGAAGGGGAATGTC
ATCCATATAATCTACGCATTCACAGAGGTTGCCAACAACAACGACAGTTT
GGATGCCACTATGCAAGATGTGAAGGGCGCAACCACTTCACATGCGCTCT
AACTCCGGAAGCGGCAGCTCAAACTAACTGTGAGTATGGGCAAATATATG
TCAAGTCTGTTTCCCTTCAGCAAAACCGTCCTGTGGATTTCCAGCTTGCT
GTCAATCTGCCCGGTCGTGATATTGATGTCGTGCTTCTTATCGATGCGAG
CTCCTCCACAAGACCTCGCCTTAATGCCGTCAAGAACCAGCTGGTCTCAT
TTGTGAGACAGCTTAGTGGAAGAGCTCGCGTTGCTGTGGCCATCTATGGT
GGAGAAGACTCCTTTGACGAAACCGGAATGAAGGTGCTGTCTGCAGCTAG
TGAGGATGTGCAACTAGCGTTGAATGCTCTTGAGAGTATTCCCACTTTCC
CAGATGGCGTGCGCACGACGCTAACTGCTTTGCACTCAGTAGTAACTTCT
CAGGAGCTGTCACTTCTTCGAGAGCGCAGCATGATTGTACTCCTTGGAGA
TACACCCGGGCGAGAACCGGAGTGCCGATACCAGCTTTCTCGAAGTGCCA
TTTCAAACGAATTGTACGGGTTTACTTCTGGATTCTCGGTGATACCGGTA
AGCCTCGGTGGGGTGGGATTGGACGCGGCACTAGCTCCAATTTCACCATG
TTCAAATGGGTATGGCAGTCAAGACCCGCAACCGGTAGCGGCTGGTCAGG
CGAGCAATCTAGCAGAACAAACCAAGGGCGAGGTGATACAGTCGATCACG
ACAAGCAATCTGTTTGATGCCGTTGACCGCGTAAGGAGAAACCCTGCCCG
AACTCACCAGGCCAAACCAGGCGCGGAAATCTACATTTCCACCGCCAGCG
TTGAGCCCGTCAATCAGCCTTACTACCCTCGCCAGGAGCGCATTAACGGA
TGTGGAGATCGTATTACTACAAGCGTGACTGGAGTTCCAAGATATGTAAG
CGAGCCTTTTCTAAATACCGGCAGTTTGAGACTTGCCCTGGCACAGGGGG
CTTGTAGGAGAGGTGGTTTCGAATGTCAAATTCGGATTATGGATCATGTG
CGTGGGTACGAATCTATGAGTCATTGGTCGAGACCGATTGTGAACTACAA
AAAGATTAGCATTCGCGCATGCATGTGA
back to top

Coding sequence (CDS) from alignment at tig00000031_pilon:335407..336784+

>Gchil10339.t1 ID=Gchil10339.t1|Name=Gchil10339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1308bp|location=Sequence derived from alignment at tig00000031_pilon:335407..336784+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGTCCCGCATAACAAAATAACATCCACCGCAAGTTTCCCGCTTCT
AAATGATTTGGACGGTCCCTATGGCCCACAATGTTGGGATAGAAGAACGT
TCCCATACATCCAGTGCGAAGGGGAATGTCATCCATATAATCTACGCATT
CACAGAGGTTGCCAACAACAACGACAGTTTGGATGCCACTATGCAAGATG
TGAAGGGCGCAACCACTTCACATGCGCTCTAACTCCGGAAGCGGCAGCTC
AAACTAACTGTGAGTATGGGCAAATATATGTCAAGTCTGTTTCCCTTCAG
CAAAACCGTCCTGTGGATTTCCAGCTTGCTGTCAATCTGCCCGGTCGTGA
TATTGATGTCGTGCTTCTTATCGATGCGAGCTCCTCCACAAGACCTCGCC
TTAATGCCGTCAAGAACCAGCTGGTCTCATTTGTGAGACAGCTTAGTGGA
AGAGCTCGCGTTGCTGTGGCCATCTATGGTGGAGAAGACTCCTTTGACGA
AACCGGAATGAAGGTGCTGTCTGCAGCTAGTGAGGATGTGCAACTAGCGT
TGAATGCTCTTGAGAGTATTCCCACTTTCCCAGATGGCGTGCGCACGACG
CTAACTGCTTTGCACTCAGTAGTAACTTCTCAGGAGCTGTCACTTCTTCG
AGAGCGCAGCATGATTGTACTCCTTGGAGATACACCCGGGCGAGAACCGG
AGTGCCGATACCAGCTTTCTCGAAGTGCCATTTCAAACGAATTGTACGGG
TTTACTTCTGGATTCTCGGTGATACCGGTAAGCCTCGGTGGGGTGGGATT
GGACGCGGCACTAGCTCCAATTTCACCATGTTCAAATGGGTATGGCAGTC
AAGACCCGCAACCGGTAGCGGCTGGTCAGGCGAGCAATCTAGCAGAACAA
ACCAAGGGCGAGGTGATACAGTCGATCACGACAAGCAATCTGTTTGATGC
CGTTGACCGCGTAAGGAGAAACCCTGCCCGAACTCACCAGGCCAAACCAG
GCGCGGAAATCTACATTTCCACCGCCAGCGTTGAGCCCGTCAATCAGCCT
TACTACCCTCGCCAGGAGCGCATTAACGGATGTGGAGATCGTATTACTAC
AAGCGTGACTGGAGTTCCAAGATATGTAAGCGAGCCTTTTCTAAATACCG
GCAGTTTGAGACTTGCCCTGGCACAGGGGGCTTGTAGGAGAGGTGGTTTC
GAATGTCAAATTCGGATTATGGATCATGTGCGTGGGTACGAATCTATGAG
TCATTGGTCGAGACCGATTGTGAACTACAAAAAGATTAGCATTCGCGCAT
GCATGTGA
back to top