Gchil10336.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10336.t1
Unique NameGchil10336.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length797
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000031_piloncontigtig00000031_pilon:290257..292647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10336Gchil10336Gracilaria chilensis NLEC103_M9 malegenetig00000031_pilon 290257..292647 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10336.t1.stop1Gchil10336.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000031_pilon 290257..290259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10336.t1.CDS1Gchil10336.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 290257..292647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10336.t1.exon1Gchil10336.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 290257..292647 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10336.t1.start1Gchil10336.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000031_pilon 292645..292647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10336.t1Gchil10336.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000031_pilon 290257..292647 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10336.t1 ID=Gchil10336.t1|Name=Gchil10336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=797bp
MVITSLSDLVGRHIAHMEVLDGTWKAHTGNVAAHCLGAPISAAVGLSVAK
AGVFLDGHALFNVKWDELTPSITFGHNEYDSHIGRIYFDNFGMSFLGIIS
ASPGSKAYAVRGTTSERYKTQRRLKGGSGTWEDSVDLVLGTTFVDTLKFF
AELGGEDVTDRVTTTAVSGLSITYDMATVDGMYFDPTSFTITTDPIITEE
GRVYSKFDGVFRDEKERKEWEWKGLSDDFPGRSQIHAAHQAILRRTASSI
AVPKPLASKTLSVLQLHNLTSLIRNNDDPDVEPFTDRAQRRGGQYIQDLL
NASLEGNWAGNILGAVPTLNQNLRAVRDRHSAWLQKEAVPNMGYTLLNCV
SDPEYKEHIEKIDVDKIDENYQSYSESLEFFDCSHHTYVEGYQREVVEIR
PYIEDEAGNWGTKYATFLQDETFLNMWRIRIATNMYDNPKKDVYESYVKL
LLLFPDDSKIPGKVLGVLVSELLGVQITKGIWNGVGTSFLAASTKAMVES
SLDFPDFKEKIEEYKTVATEMYQGLGSYERMGEVFEQILIKANYTKVQLR
AWGPRELTGAARAVGEELPSSESGFLRTVEKWGTTSGETLKTMAFGGLGG
YLLTHVLDDGSISLISATKLPLIGAVRLLYADSDKSFLIAKRLGDWMETN
LKIENDKLEKCGSNFSAFYDQNGVVESSVVNNVLGSDTDRFSDMYASSFH
VFGSMVSGNALHEAMEQGGSFIEKIKETIRFFTDNFAHAKLSVQRSMAWN
GPLTAICGVLGLISVFISWLIGLFSPRPDPIKTFIDGPLTRDGYTK*
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spliced messenger RNA

>Gchil10336.t1 ID=Gchil10336.t1|Name=Gchil10336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2391bp|location=Sequence derived from alignment at tig00000031_pilon:290257..292647- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATTACAAGTCTTTCGGACCTTGTGGGACGCCACATCGCCCACAT
GGAAGTTCTCGACGGCACGTGGAAGGCGCACACGGGCAACGTCGCCGCAC
ACTGCCTCGGAGCGCCCATATCTGCGGCCGTTGGATTGTCCGTGGCCAAA
GCAGGTGTGTTTCTCGACGGTCACGCCCTTTTCAACGTCAAGTGGGATGA
ATTAACGCCCAGCATCACCTTTGGTCACAACGAGTATGATAGTCACATTG
GACGAATCTACTTCGACAATTTCGGCATGTCCTTTCTCGGTATCATCTCA
GCTTCACCGGGCTCCAAGGCGTATGCCGTTCGGGGTACCACGTCGGAGCG
GTACAAGACTCAACGCAGGCTGAAAGGGGGCAGTGGTACTTGGGAGGACA
GTGTTGATCTTGTTTTAGGCACCACGTTCGTAGACACACTCAAATTCTTC
GCCGAACTGGGTGGGGAAGATGTAACAGACCGAGTTACCACAACAGCAGT
CTCTGGACTTTCCATAACCTACGACATGGCGACAGTAGACGGCATGTATT
TTGACCCCACATCATTCACCATAACCACAGATCCAATTATCACTGAAGAG
GGGCGTGTTTACAGCAAGTTTGATGGTGTGTTCAGGGATGAGAAAGAACG
AAAAGAGTGGGAGTGGAAAGGACTCAGTGACGACTTCCCCGGACGTTCGC
AAATACATGCTGCACACCAAGCGATTTTGCGGCGAACTGCCTCCTCGATT
GCAGTGCCAAAGCCTCTTGCTTCGAAAACATTATCCGTCCTACAGCTGCA
CAACCTCACTTCTCTGATAAGAAACAATGATGATCCGGATGTAGAGCCGT
TCACCGACAGAGCGCAAAGGAGAGGAGGCCAGTACATTCAAGATCTTTTG
AACGCTTCATTGGAAGGTAATTGGGCGGGTAACATTTTAGGAGCTGTCCC
CACTTTGAATCAGAATTTGAGAGCGGTGCGCGACCGACACAGTGCCTGGT
TACAGAAAGAAGCAGTTCCGAACATGGGATACACACTCCTAAATTGTGTA
TCAGACCCTGAATACAAAGAACACATCGAGAAAATCGATGTAGACAAGAT
CGATGAGAACTATCAATCGTATTCCGAGTCTCTTGAGTTCTTCGACTGTT
CTCACCATACGTACGTGGAAGGCTATCAAAGAGAAGTTGTGGAGATCAGG
CCCTACATCGAAGACGAGGCAGGCAATTGGGGAACGAAGTACGCCACTTT
TCTGCAAGATGAAACTTTTCTGAACATGTGGCGAATTCGAATCGCAACCA
ATATGTATGACAATCCAAAGAAGGATGTGTATGAATCGTACGTGAAGTTG
CTCCTTCTCTTCCCAGATGATTCAAAAATTCCAGGGAAGGTGTTAGGTGT
TTTGGTGTCTGAATTGTTGGGCGTGCAAATCACAAAGGGGATTTGGAACG
GGGTAGGCACCTCGTTTCTTGCTGCCAGCACGAAAGCTATGGTTGAATCT
TCGTTAGACTTTCCTGACTTCAAGGAGAAAATTGAAGAATATAAGACAGT
TGCGACGGAAATGTACCAGGGCCTCGGAAGTTATGAGCGAATGGGCGAAG
TATTTGAACAGATTCTCATCAAAGCCAACTATACAAAGGTGCAGCTCCGA
GCTTGGGGTCCGAGAGAGTTAACAGGGGCCGCCAGGGCAGTTGGTGAAGA
GCTGCCTTCAAGCGAAAGTGGATTTTTAAGAACCGTAGAGAAATGGGGAA
CAACATCGGGGGAAACTCTCAAGACGATGGCGTTCGGAGGACTGGGGGGT
TACTTACTCACTCATGTGCTTGACGACGGATCAATCAGTCTGATTTCGGC
TACGAAACTGCCATTGATTGGAGCTGTAAGGCTGCTGTATGCTGACAGTG
ACAAATCTTTCTTGATCGCGAAACGTCTCGGTGATTGGATGGAGACCAAC
CTAAAGATAGAGAATGACAAACTGGAGAAATGTGGTAGCAACTTTAGTGC
GTTTTACGACCAAAATGGCGTGGTGGAATCTTCAGTAGTGAACAACGTGT
TGGGAAGTGATACAGATAGGTTTTCGGACATGTATGCGTCTTCATTTCAC
GTCTTCGGCTCGATGGTTAGTGGAAACGCGTTACATGAAGCAATGGAACA
AGGAGGCAGTTTCATAGAAAAAATTAAGGAAACCATCCGCTTTTTTACAG
ATAATTTCGCGCACGCAAAGTTGTCAGTGCAAAGGTCTATGGCTTGGAAT
GGACCGTTGACGGCTATTTGTGGGGTGCTGGGACTTATTTCCGTATTTAT
TTCATGGTTAATTGGATTGTTTAGTCCTCGACCAGACCCTATCAAAACGT
TCATTGATGGGCCGCTGACGAGAGATGGCTACACCAAGTAG
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protein sequence of Gchil10336.t1

>Gchil10336.t1 ID=Gchil10336.t1|Name=Gchil10336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=797bp
MVITSLSDLVGRHIAHMEVLDGTWKAHTGNVAAHCLGAPISAAVGLSVAK
AGVFLDGHALFNVKWDELTPSITFGHNEYDSHIGRIYFDNFGMSFLGIIS
ASPGSKAYAVRGTTSERYKTQRRLKGGSGTWEDSVDLVLGTTFVDTLKFF
AELGGEDVTDRVTTTAVSGLSITYDMATVDGMYFDPTSFTITTDPIITEE
GRVYSKFDGVFRDEKERKEWEWKGLSDDFPGRSQIHAAHQAILRRTASSI
AVPKPLASKTLSVLQLHNLTSLIRNNDDPDVEPFTDRAQRRGGQYIQDLL
NASLEGNWAGNILGAVPTLNQNLRAVRDRHSAWLQKEAVPNMGYTLLNCV
SDPEYKEHIEKIDVDKIDENYQSYSESLEFFDCSHHTYVEGYQREVVEIR
PYIEDEAGNWGTKYATFLQDETFLNMWRIRIATNMYDNPKKDVYESYVKL
LLLFPDDSKIPGKVLGVLVSELLGVQITKGIWNGVGTSFLAASTKAMVES
SLDFPDFKEKIEEYKTVATEMYQGLGSYERMGEVFEQILIKANYTKVQLR
AWGPRELTGAARAVGEELPSSESGFLRTVEKWGTTSGETLKTMAFGGLGG
YLLTHVLDDGSISLISATKLPLIGAVRLLYADSDKSFLIAKRLGDWMETN
LKIENDKLEKCGSNFSAFYDQNGVVESSVVNNVLGSDTDRFSDMYASSFH
VFGSMVSGNALHEAMEQGGSFIEKIKETIRFFTDNFAHAKLSVQRSMAWN
GPLTAICGVLGLISVFISWLIGLFSPRPDPIKTFIDGPLTRDGYTK*
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mRNA from alignment at tig00000031_pilon:290257..292647-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10336.t1 ID=Gchil10336.t1|Name=Gchil10336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2391bp|location=Sequence derived from alignment at tig00000031_pilon:290257..292647- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCATTACAAGTCTTTCGGACCTTGTGGGACGCCACATCGCCCACAT
GGAAGTTCTCGACGGCACGTGGAAGGCGCACACGGGCAACGTCGCCGCAC
ACTGCCTCGGAGCGCCCATATCTGCGGCCGTTGGATTGTCCGTGGCCAAA
GCAGGTGTGTTTCTCGACGGTCACGCCCTTTTCAACGTCAAGTGGGATGA
ATTAACGCCCAGCATCACCTTTGGTCACAACGAGTATGATAGTCACATTG
GACGAATCTACTTCGACAATTTCGGCATGTCCTTTCTCGGTATCATCTCA
GCTTCACCGGGCTCCAAGGCGTATGCCGTTCGGGGTACCACGTCGGAGCG
GTACAAGACTCAACGCAGGCTGAAAGGGGGCAGTGGTACTTGGGAGGACA
GTGTTGATCTTGTTTTAGGCACCACGTTCGTAGACACACTCAAATTCTTC
GCCGAACTGGGTGGGGAAGATGTAACAGACCGAGTTACCACAACAGCAGT
CTCTGGACTTTCCATAACCTACGACATGGCGACAGTAGACGGCATGTATT
TTGACCCCACATCATTCACCATAACCACAGATCCAATTATCACTGAAGAG
GGGCGTGTTTACAGCAAGTTTGATGGTGTGTTCAGGGATGAGAAAGAACG
AAAAGAGTGGGAGTGGAAAGGACTCAGTGACGACTTCCCCGGACGTTCGC
AAATACATGCTGCACACCAAGCGATTTTGCGGCGAACTGCCTCCTCGATT
GCAGTGCCAAAGCCTCTTGCTTCGAAAACATTATCCGTCCTACAGCTGCA
CAACCTCACTTCTCTGATAAGAAACAATGATGATCCGGATGTAGAGCCGT
TCACCGACAGAGCGCAAAGGAGAGGAGGCCAGTACATTCAAGATCTTTTG
AACGCTTCATTGGAAGGTAATTGGGCGGGTAACATTTTAGGAGCTGTCCC
CACTTTGAATCAGAATTTGAGAGCGGTGCGCGACCGACACAGTGCCTGGT
TACAGAAAGAAGCAGTTCCGAACATGGGATACACACTCCTAAATTGTGTA
TCAGACCCTGAATACAAAGAACACATCGAGAAAATCGATGTAGACAAGAT
CGATGAGAACTATCAATCGTATTCCGAGTCTCTTGAGTTCTTCGACTGTT
CTCACCATACGTACGTGGAAGGCTATCAAAGAGAAGTTGTGGAGATCAGG
CCCTACATCGAAGACGAGGCAGGCAATTGGGGAACGAAGTACGCCACTTT
TCTGCAAGATGAAACTTTTCTGAACATGTGGCGAATTCGAATCGCAACCA
ATATGTATGACAATCCAAAGAAGGATGTGTATGAATCGTACGTGAAGTTG
CTCCTTCTCTTCCCAGATGATTCAAAAATTCCAGGGAAGGTGTTAGGTGT
TTTGGTGTCTGAATTGTTGGGCGTGCAAATCACAAAGGGGATTTGGAACG
GGGTAGGCACCTCGTTTCTTGCTGCCAGCACGAAAGCTATGGTTGAATCT
TCGTTAGACTTTCCTGACTTCAAGGAGAAAATTGAAGAATATAAGACAGT
TGCGACGGAAATGTACCAGGGCCTCGGAAGTTATGAGCGAATGGGCGAAG
TATTTGAACAGATTCTCATCAAAGCCAACTATACAAAGGTGCAGCTCCGA
GCTTGGGGTCCGAGAGAGTTAACAGGGGCCGCCAGGGCAGTTGGTGAAGA
GCTGCCTTCAAGCGAAAGTGGATTTTTAAGAACCGTAGAGAAATGGGGAA
CAACATCGGGGGAAACTCTCAAGACGATGGCGTTCGGAGGACTGGGGGGT
TACTTACTCACTCATGTGCTTGACGACGGATCAATCAGTCTGATTTCGGC
TACGAAACTGCCATTGATTGGAGCTGTAAGGCTGCTGTATGCTGACAGTG
ACAAATCTTTCTTGATCGCGAAACGTCTCGGTGATTGGATGGAGACCAAC
CTAAAGATAGAGAATGACAAACTGGAGAAATGTGGTAGCAACTTTAGTGC
GTTTTACGACCAAAATGGCGTGGTGGAATCTTCAGTAGTGAACAACGTGT
TGGGAAGTGATACAGATAGGTTTTCGGACATGTATGCGTCTTCATTTCAC
GTCTTCGGCTCGATGGTTAGTGGAAACGCGTTACATGAAGCAATGGAACA
AGGAGGCAGTTTCATAGAAAAAATTAAGGAAACCATCCGCTTTTTTACAG
ATAATTTCGCGCACGCAAAGTTGTCAGTGCAAAGGTCTATGGCTTGGAAT
GGACCGTTGACGGCTATTTGTGGGGTGCTGGGACTTATTTCCGTATTTAT
TTCATGGTTAATTGGATTGTTTAGTCCTCGACCAGACCCTATCAAAACGT
TCATTGATGGGCCGCTGACGAGAGATGGCTACACCAAGTAG
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Coding sequence (CDS) from alignment at tig00000031_pilon:290257..292647-

>Gchil10336.t1 ID=Gchil10336.t1|Name=Gchil10336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2391bp|location=Sequence derived from alignment at tig00000031_pilon:290257..292647- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCATTACAAGTCTTTCGGACCTTGTGGGACGCCACATCGCCCACAT
GGAAGTTCTCGACGGCACGTGGAAGGCGCACACGGGCAACGTCGCCGCAC
ACTGCCTCGGAGCGCCCATATCTGCGGCCGTTGGATTGTCCGTGGCCAAA
GCAGGTGTGTTTCTCGACGGTCACGCCCTTTTCAACGTCAAGTGGGATGA
ATTAACGCCCAGCATCACCTTTGGTCACAACGAGTATGATAGTCACATTG
GACGAATCTACTTCGACAATTTCGGCATGTCCTTTCTCGGTATCATCTCA
GCTTCACCGGGCTCCAAGGCGTATGCCGTTCGGGGTACCACGTCGGAGCG
GTACAAGACTCAACGCAGGCTGAAAGGGGGCAGTGGTACTTGGGAGGACA
GTGTTGATCTTGTTTTAGGCACCACGTTCGTAGACACACTCAAATTCTTC
GCCGAACTGGGTGGGGAAGATGTAACAGACCGAGTTACCACAACAGCAGT
CTCTGGACTTTCCATAACCTACGACATGGCGACAGTAGACGGCATGTATT
TTGACCCCACATCATTCACCATAACCACAGATCCAATTATCACTGAAGAG
GGGCGTGTTTACAGCAAGTTTGATGGTGTGTTCAGGGATGAGAAAGAACG
AAAAGAGTGGGAGTGGAAAGGACTCAGTGACGACTTCCCCGGACGTTCGC
AAATACATGCTGCACACCAAGCGATTTTGCGGCGAACTGCCTCCTCGATT
GCAGTGCCAAAGCCTCTTGCTTCGAAAACATTATCCGTCCTACAGCTGCA
CAACCTCACTTCTCTGATAAGAAACAATGATGATCCGGATGTAGAGCCGT
TCACCGACAGAGCGCAAAGGAGAGGAGGCCAGTACATTCAAGATCTTTTG
AACGCTTCATTGGAAGGTAATTGGGCGGGTAACATTTTAGGAGCTGTCCC
CACTTTGAATCAGAATTTGAGAGCGGTGCGCGACCGACACAGTGCCTGGT
TACAGAAAGAAGCAGTTCCGAACATGGGATACACACTCCTAAATTGTGTA
TCAGACCCTGAATACAAAGAACACATCGAGAAAATCGATGTAGACAAGAT
CGATGAGAACTATCAATCGTATTCCGAGTCTCTTGAGTTCTTCGACTGTT
CTCACCATACGTACGTGGAAGGCTATCAAAGAGAAGTTGTGGAGATCAGG
CCCTACATCGAAGACGAGGCAGGCAATTGGGGAACGAAGTACGCCACTTT
TCTGCAAGATGAAACTTTTCTGAACATGTGGCGAATTCGAATCGCAACCA
ATATGTATGACAATCCAAAGAAGGATGTGTATGAATCGTACGTGAAGTTG
CTCCTTCTCTTCCCAGATGATTCAAAAATTCCAGGGAAGGTGTTAGGTGT
TTTGGTGTCTGAATTGTTGGGCGTGCAAATCACAAAGGGGATTTGGAACG
GGGTAGGCACCTCGTTTCTTGCTGCCAGCACGAAAGCTATGGTTGAATCT
TCGTTAGACTTTCCTGACTTCAAGGAGAAAATTGAAGAATATAAGACAGT
TGCGACGGAAATGTACCAGGGCCTCGGAAGTTATGAGCGAATGGGCGAAG
TATTTGAACAGATTCTCATCAAAGCCAACTATACAAAGGTGCAGCTCCGA
GCTTGGGGTCCGAGAGAGTTAACAGGGGCCGCCAGGGCAGTTGGTGAAGA
GCTGCCTTCAAGCGAAAGTGGATTTTTAAGAACCGTAGAGAAATGGGGAA
CAACATCGGGGGAAACTCTCAAGACGATGGCGTTCGGAGGACTGGGGGGT
TACTTACTCACTCATGTGCTTGACGACGGATCAATCAGTCTGATTTCGGC
TACGAAACTGCCATTGATTGGAGCTGTAAGGCTGCTGTATGCTGACAGTG
ACAAATCTTTCTTGATCGCGAAACGTCTCGGTGATTGGATGGAGACCAAC
CTAAAGATAGAGAATGACAAACTGGAGAAATGTGGTAGCAACTTTAGTGC
GTTTTACGACCAAAATGGCGTGGTGGAATCTTCAGTAGTGAACAACGTGT
TGGGAAGTGATACAGATAGGTTTTCGGACATGTATGCGTCTTCATTTCAC
GTCTTCGGCTCGATGGTTAGTGGAAACGCGTTACATGAAGCAATGGAACA
AGGAGGCAGTTTCATAGAAAAAATTAAGGAAACCATCCGCTTTTTTACAG
ATAATTTCGCGCACGCAAAGTTGTCAGTGCAAAGGTCTATGGCTTGGAAT
GGACCGTTGACGGCTATTTGTGGGGTGCTGGGACTTATTTCCGTATTTAT
TTCATGGTTAATTGGATTGTTTAGTCCTCGACCAGACCCTATCAAAACGT
TCATTGATGGGCCGCTGACGAGAGATGGCTACACCAAGTAG
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