Gchil10334.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10334.t1
Unique NameGchil10334.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000031_piloncontigtig00000031_pilon:215890..216762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog497965.Cyan7822_0824
Max annot lvl1117|Cyanobacteria
Evalue1.12e-110
EggNOG OGs28M4D@1|root,2ZAIB@2|Bacteria,1G35P@1117|Cyanobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10334Gchil10334Gracilaria chilensis NLEC103_M9 malegenetig00000031_pilon 215890..216762 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10334.t1.stop1Gchil10334.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000031_pilon 215890..215892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10334.t1.CDS1Gchil10334.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 215890..216762 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10334.t1.exon1Gchil10334.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 215890..216762 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10334.t1.start1Gchil10334.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000031_pilon 216760..216762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10334.t1Gchil10334.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000031_pilon 215890..216762 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10334.t1 ID=Gchil10334.t1|Name=Gchil10334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MDRPSEKKVVDSRLVNVLSFLVIAFIGLGYSLSTLPTFSPPPDGYSLSDR
ECIGGVLKFGLVATHILIFVLIPLAMKVFYTSLSALNLPQSSIFASQLGL
AFIMVAIASEIGWHVTQCWYYVDEFTMLNFMFYFFLLSAFALWSDGLVES
HTSTDTLLNVLFALSLFIVCLVYPAGSANGNSSYKTPIYIALTFIFAVLT
YRGYKLLGSWRVLWFPFFSVGVNLFFVFLLQKYGGDPYTDPHKISNAVFH
VAHDLLGTETGVVIFTVMVYLKGRQARKEAERAQLLPGLT*
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spliced messenger RNA

>Gchil10334.t1 ID=Gchil10334.t1|Name=Gchil10334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000031_pilon:215890..216762- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCGCCCATCCGAGAAAAAAGTGGTTGACTCTCGCCTAGTAAACGT
GCTCTCATTCCTCGTGATTGCCTTCATCGGACTGGGGTACTCTTTGAGCA
CGCTTCCAACGTTCAGCCCTCCACCCGATGGCTACTCTCTATCGGATCGC
GAGTGCATCGGCGGTGTCTTGAAGTTTGGTTTGGTTGCCACGCATATTCT
TATTTTCGTGTTGATTCCGCTGGCCATGAAAGTGTTCTACACCTCGTTAT
CGGCGTTGAATTTACCACAATCGTCAATCTTCGCGTCACAACTGGGGCTT
GCGTTCATTATGGTGGCGATTGCTTCGGAGATTGGATGGCATGTCACTCA
GTGTTGGTACTATGTGGATGAATTCACAATGTTGAACTTCATGTTTTACT
TCTTTCTACTTTCTGCGTTTGCTCTTTGGAGCGACGGGCTTGTAGAGTCG
CACACTTCCACGGATACTTTATTGAACGTTCTGTTTGCCCTGTCTTTGTT
CATTGTGTGTCTTGTGTATCCCGCGGGCAGTGCCAATGGGAATAGCAGCT
ACAAAACTCCCATTTACATAGCGCTGACGTTTATCTTTGCTGTTCTCACA
TATCGAGGATACAAACTACTGGGCAGCTGGCGTGTCTTATGGTTCCCTTT
CTTCTCCGTTGGCGTTAACTTGTTCTTTGTGTTCTTGCTACAAAAGTACG
GAGGTGACCCGTACACCGACCCGCACAAGATTTCAAATGCCGTATTTCAC
GTTGCTCACGATTTGCTTGGAACGGAAACCGGCGTGGTTATCTTCACCGT
GATGGTGTATCTCAAGGGTCGTCAGGCCAGAAAGGAGGCAGAGCGAGCGC
AATTGCTTCCAGGACTCACATAG
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protein sequence of Gchil10334.t1

>Gchil10334.t1 ID=Gchil10334.t1|Name=Gchil10334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MDRPSEKKVVDSRLVNVLSFLVIAFIGLGYSLSTLPTFSPPPDGYSLSDR
ECIGGVLKFGLVATHILIFVLIPLAMKVFYTSLSALNLPQSSIFASQLGL
AFIMVAIASEIGWHVTQCWYYVDEFTMLNFMFYFFLLSAFALWSDGLVES
HTSTDTLLNVLFALSLFIVCLVYPAGSANGNSSYKTPIYIALTFIFAVLT
YRGYKLLGSWRVLWFPFFSVGVNLFFVFLLQKYGGDPYTDPHKISNAVFH
VAHDLLGTETGVVIFTVMVYLKGRQARKEAERAQLLPGLT*
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mRNA from alignment at tig00000031_pilon:215890..216762-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10334.t1 ID=Gchil10334.t1|Name=Gchil10334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000031_pilon:215890..216762- (Gracilaria chilensis NLEC103_M9 male)
ATGGACCGCCCATCCGAGAAAAAAGTGGTTGACTCTCGCCTAGTAAACGT
GCTCTCATTCCTCGTGATTGCCTTCATCGGACTGGGGTACTCTTTGAGCA
CGCTTCCAACGTTCAGCCCTCCACCCGATGGCTACTCTCTATCGGATCGC
GAGTGCATCGGCGGTGTCTTGAAGTTTGGTTTGGTTGCCACGCATATTCT
TATTTTCGTGTTGATTCCGCTGGCCATGAAAGTGTTCTACACCTCGTTAT
CGGCGTTGAATTTACCACAATCGTCAATCTTCGCGTCACAACTGGGGCTT
GCGTTCATTATGGTGGCGATTGCTTCGGAGATTGGATGGCATGTCACTCA
GTGTTGGTACTATGTGGATGAATTCACAATGTTGAACTTCATGTTTTACT
TCTTTCTACTTTCTGCGTTTGCTCTTTGGAGCGACGGGCTTGTAGAGTCG
CACACTTCCACGGATACTTTATTGAACGTTCTGTTTGCCCTGTCTTTGTT
CATTGTGTGTCTTGTGTATCCCGCGGGCAGTGCCAATGGGAATAGCAGCT
ACAAAACTCCCATTTACATAGCGCTGACGTTTATCTTTGCTGTTCTCACA
TATCGAGGATACAAACTACTGGGCAGCTGGCGTGTCTTATGGTTCCCTTT
CTTCTCCGTTGGCGTTAACTTGTTCTTTGTGTTCTTGCTACAAAAGTACG
GAGGTGACCCGTACACCGACCCGCACAAGATTTCAAATGCCGTATTTCAC
GTTGCTCACGATTTGCTTGGAACGGAAACCGGCGTGGTTATCTTCACCGT
GATGGTGTATCTCAAGGGTCGTCAGGCCAGAAAGGAGGCAGAGCGAGCGC
AATTGCTTCCAGGACTCACATAG
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Coding sequence (CDS) from alignment at tig00000031_pilon:215890..216762-

>Gchil10334.t1 ID=Gchil10334.t1|Name=Gchil10334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000031_pilon:215890..216762- (Gracilaria chilensis NLEC103_M9 male)
ATGGACCGCCCATCCGAGAAAAAAGTGGTTGACTCTCGCCTAGTAAACGT
GCTCTCATTCCTCGTGATTGCCTTCATCGGACTGGGGTACTCTTTGAGCA
CGCTTCCAACGTTCAGCCCTCCACCCGATGGCTACTCTCTATCGGATCGC
GAGTGCATCGGCGGTGTCTTGAAGTTTGGTTTGGTTGCCACGCATATTCT
TATTTTCGTGTTGATTCCGCTGGCCATGAAAGTGTTCTACACCTCGTTAT
CGGCGTTGAATTTACCACAATCGTCAATCTTCGCGTCACAACTGGGGCTT
GCGTTCATTATGGTGGCGATTGCTTCGGAGATTGGATGGCATGTCACTCA
GTGTTGGTACTATGTGGATGAATTCACAATGTTGAACTTCATGTTTTACT
TCTTTCTACTTTCTGCGTTTGCTCTTTGGAGCGACGGGCTTGTAGAGTCG
CACACTTCCACGGATACTTTATTGAACGTTCTGTTTGCCCTGTCTTTGTT
CATTGTGTGTCTTGTGTATCCCGCGGGCAGTGCCAATGGGAATAGCAGCT
ACAAAACTCCCATTTACATAGCGCTGACGTTTATCTTTGCTGTTCTCACA
TATCGAGGATACAAACTACTGGGCAGCTGGCGTGTCTTATGGTTCCCTTT
CTTCTCCGTTGGCGTTAACTTGTTCTTTGTGTTCTTGCTACAAAAGTACG
GAGGTGACCCGTACACCGACCCGCACAAGATTTCAAATGCCGTATTTCAC
GTTGCTCACGATTTGCTTGGAACGGAAACCGGCGTGGTTATCTTCACCGT
GATGGTGTATCTCAAGGGTCGTCAGGCCAGAAAGGAGGCAGAGCGAGCGC
AATTGCTTCCAGGACTCACATAG
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