Gchil10333.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10333.t1
Unique NameGchil10333.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length427
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000031_piloncontigtig00000031_pilon:213365..214645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10333Gchil10333Gracilaria chilensis NLEC103_M9 malegenetig00000031_pilon 213365..214645 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10333.t1.stop1Gchil10333.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000031_pilon 213365..213367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10333.t1.CDS1Gchil10333.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 213365..214645 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10333.t1.exon1Gchil10333.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 213365..214645 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10333.t1.start1Gchil10333.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000031_pilon 214643..214645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10333.t1Gchil10333.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000031_pilon 213365..214645 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10333.t1 ID=Gchil10333.t1|Name=Gchil10333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=427bp
MFLVLFSASTNFDMGHPAFVSSVPLSPFTQRSPPSLAHRLPRHTLHHPTR
HCVLHASASNSSKNSNPTPKKPSFPSRLTDVKYVEIDSTTGYLATSQTSN
KTVIQQGTLTLPYGDVAYLPVSTKRTSYAAVYGREDVLSNPDLSTTTFIV
FAHGFSQRPRNYSSLLRLLAAQGYVIVAPRTWIFSILFTKIETLSCFASP
PAKLQTALLIDSARSLQVAEEYTSAIHLLGHSMGGAMMLSFAGRVGTNIR
SVALMAPDAYDSVITELNQTVSLKAKDGLERMSKLAEVMAVNLMLLHGKK
DYIVCSCEMEQILSVFIREAVTGWAELIKGTHLGFEDSLKVDIPIIEYFD
ILFFGIIDMIVFGSLDIFGLDTKEQLQSTKSLLLNWFIHAQDENHRLIDE
MESTSVAQEISYSWSKEPSLVTVDAE*
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spliced messenger RNA

>Gchil10333.t1 ID=Gchil10333.t1|Name=Gchil10333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000031_pilon:213365..214645- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCTCGTACTCTTCTCTGCGTCAACCAATTTCGACATGGGGCATCC
AGCGTTTGTTTCTTCAGTCCCGCTTTCGCCCTTCACTCAACGCTCTCCGC
CGTCGCTGGCACACAGGCTTCCTCGTCACACGCTACATCATCCAACACGT
CACTGTGTATTGCATGCATCCGCTTCCAACTCCTCCAAAAACTCAAATCC
CACCCCCAAAAAACCTTCCTTTCCCTCTCGTCTCACTGACGTAAAATATG
TCGAAATCGACTCCACGACCGGGTATCTAGCAACCTCCCAAACCTCGAAC
AAAACAGTTATTCAACAAGGCACTCTCACTCTTCCGTATGGCGATGTTGC
CTATCTGCCTGTCTCCACAAAGCGAACGTCATATGCCGCCGTATACGGTC
GTGAAGACGTACTGTCAAACCCTGATCTTTCTACCACAACTTTCATAGTC
TTTGCTCATGGTTTCTCCCAGCGCCCGCGTAACTACTCTTCACTGCTGCG
TCTACTTGCTGCGCAAGGTTATGTAATTGTAGCACCGCGTACTTGGATTT
TCTCCATACTTTTCACGAAGATTGAGACATTATCATGTTTCGCTTCTCCC
CCGGCGAAACTGCAAACTGCGCTGCTAATCGACTCGGCCCGATCCCTCCA
GGTTGCTGAGGAGTATACGTCAGCCATTCACCTGTTGGGACACTCCATGG
GCGGCGCCATGATGCTGTCATTCGCCGGACGAGTCGGCACCAATATTCGA
TCCGTAGCACTCATGGCTCCTGATGCGTACGACTCAGTAATCACAGAGCT
GAATCAAACCGTTTCTCTGAAAGCTAAAGATGGCCTTGAGCGTATGTCAA
AACTGGCAGAAGTAATGGCTGTTAACCTTATGCTATTGCATGGAAAGAAG
GATTACATCGTATGTTCGTGTGAAATGGAACAAATTCTCTCCGTGTTCAT
CAGAGAGGCTGTGACTGGTTGGGCTGAGCTGATAAAAGGAACTCATCTTG
GGTTTGAGGATTCTTTGAAGGTTGATATCCCGATTATTGAATATTTTGAC
ATTTTGTTTTTCGGTATCATTGACATGATTGTTTTCGGCTCTTTGGATAT
TTTTGGACTGGATACTAAAGAACAGCTTCAAAGCACCAAGTCATTACTTC
TCAACTGGTTCATTCATGCCCAAGATGAGAATCACCGTCTTATCGACGAA
ATGGAGTCCACTTCCGTTGCTCAAGAGATCTCATATTCTTGGAGCAAGGA
ACCTTCCCTCGTGACCGTCGACGCAGAGTAA
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protein sequence of Gchil10333.t1

>Gchil10333.t1 ID=Gchil10333.t1|Name=Gchil10333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=427bp
MFLVLFSASTNFDMGHPAFVSSVPLSPFTQRSPPSLAHRLPRHTLHHPTR
HCVLHASASNSSKNSNPTPKKPSFPSRLTDVKYVEIDSTTGYLATSQTSN
KTVIQQGTLTLPYGDVAYLPVSTKRTSYAAVYGREDVLSNPDLSTTTFIV
FAHGFSQRPRNYSSLLRLLAAQGYVIVAPRTWIFSILFTKIETLSCFASP
PAKLQTALLIDSARSLQVAEEYTSAIHLLGHSMGGAMMLSFAGRVGTNIR
SVALMAPDAYDSVITELNQTVSLKAKDGLERMSKLAEVMAVNLMLLHGKK
DYIVCSCEMEQILSVFIREAVTGWAELIKGTHLGFEDSLKVDIPIIEYFD
ILFFGIIDMIVFGSLDIFGLDTKEQLQSTKSLLLNWFIHAQDENHRLIDE
MESTSVAQEISYSWSKEPSLVTVDAE*
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mRNA from alignment at tig00000031_pilon:213365..214645-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10333.t1 ID=Gchil10333.t1|Name=Gchil10333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000031_pilon:213365..214645- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCTCGTACTCTTCTCTGCGTCAACCAATTTCGACATGGGGCATCC
AGCGTTTGTTTCTTCAGTCCCGCTTTCGCCCTTCACTCAACGCTCTCCGC
CGTCGCTGGCACACAGGCTTCCTCGTCACACGCTACATCATCCAACACGT
CACTGTGTATTGCATGCATCCGCTTCCAACTCCTCCAAAAACTCAAATCC
CACCCCCAAAAAACCTTCCTTTCCCTCTCGTCTCACTGACGTAAAATATG
TCGAAATCGACTCCACGACCGGGTATCTAGCAACCTCCCAAACCTCGAAC
AAAACAGTTATTCAACAAGGCACTCTCACTCTTCCGTATGGCGATGTTGC
CTATCTGCCTGTCTCCACAAAGCGAACGTCATATGCCGCCGTATACGGTC
GTGAAGACGTACTGTCAAACCCTGATCTTTCTACCACAACTTTCATAGTC
TTTGCTCATGGTTTCTCCCAGCGCCCGCGTAACTACTCTTCACTGCTGCG
TCTACTTGCTGCGCAAGGTTATGTAATTGTAGCACCGCGTACTTGGATTT
TCTCCATACTTTTCACGAAGATTGAGACATTATCATGTTTCGCTTCTCCC
CCGGCGAAACTGCAAACTGCGCTGCTAATCGACTCGGCCCGATCCCTCCA
GGTTGCTGAGGAGTATACGTCAGCCATTCACCTGTTGGGACACTCCATGG
GCGGCGCCATGATGCTGTCATTCGCCGGACGAGTCGGCACCAATATTCGA
TCCGTAGCACTCATGGCTCCTGATGCGTACGACTCAGTAATCACAGAGCT
GAATCAAACCGTTTCTCTGAAAGCTAAAGATGGCCTTGAGCGTATGTCAA
AACTGGCAGAAGTAATGGCTGTTAACCTTATGCTATTGCATGGAAAGAAG
GATTACATCGTATGTTCGTGTGAAATGGAACAAATTCTCTCCGTGTTCAT
CAGAGAGGCTGTGACTGGTTGGGCTGAGCTGATAAAAGGAACTCATCTTG
GGTTTGAGGATTCTTTGAAGGTTGATATCCCGATTATTGAATATTTTGAC
ATTTTGTTTTTCGGTATCATTGACATGATTGTTTTCGGCTCTTTGGATAT
TTTTGGACTGGATACTAAAGAACAGCTTCAAAGCACCAAGTCATTACTTC
TCAACTGGTTCATTCATGCCCAAGATGAGAATCACCGTCTTATCGACGAA
ATGGAGTCCACTTCCGTTGCTCAAGAGATCTCATATTCTTGGAGCAAGGA
ACCTTCCCTCGTGACCGTCGACGCAGAGTAA
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Coding sequence (CDS) from alignment at tig00000031_pilon:213365..214645-

>Gchil10333.t1 ID=Gchil10333.t1|Name=Gchil10333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1281bp|location=Sequence derived from alignment at tig00000031_pilon:213365..214645- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCTCGTACTCTTCTCTGCGTCAACCAATTTCGACATGGGGCATCC
AGCGTTTGTTTCTTCAGTCCCGCTTTCGCCCTTCACTCAACGCTCTCCGC
CGTCGCTGGCACACAGGCTTCCTCGTCACACGCTACATCATCCAACACGT
CACTGTGTATTGCATGCATCCGCTTCCAACTCCTCCAAAAACTCAAATCC
CACCCCCAAAAAACCTTCCTTTCCCTCTCGTCTCACTGACGTAAAATATG
TCGAAATCGACTCCACGACCGGGTATCTAGCAACCTCCCAAACCTCGAAC
AAAACAGTTATTCAACAAGGCACTCTCACTCTTCCGTATGGCGATGTTGC
CTATCTGCCTGTCTCCACAAAGCGAACGTCATATGCCGCCGTATACGGTC
GTGAAGACGTACTGTCAAACCCTGATCTTTCTACCACAACTTTCATAGTC
TTTGCTCATGGTTTCTCCCAGCGCCCGCGTAACTACTCTTCACTGCTGCG
TCTACTTGCTGCGCAAGGTTATGTAATTGTAGCACCGCGTACTTGGATTT
TCTCCATACTTTTCACGAAGATTGAGACATTATCATGTTTCGCTTCTCCC
CCGGCGAAACTGCAAACTGCGCTGCTAATCGACTCGGCCCGATCCCTCCA
GGTTGCTGAGGAGTATACGTCAGCCATTCACCTGTTGGGACACTCCATGG
GCGGCGCCATGATGCTGTCATTCGCCGGACGAGTCGGCACCAATATTCGA
TCCGTAGCACTCATGGCTCCTGATGCGTACGACTCAGTAATCACAGAGCT
GAATCAAACCGTTTCTCTGAAAGCTAAAGATGGCCTTGAGCGTATGTCAA
AACTGGCAGAAGTAATGGCTGTTAACCTTATGCTATTGCATGGAAAGAAG
GATTACATCGTATGTTCGTGTGAAATGGAACAAATTCTCTCCGTGTTCAT
CAGAGAGGCTGTGACTGGTTGGGCTGAGCTGATAAAAGGAACTCATCTTG
GGTTTGAGGATTCTTTGAAGGTTGATATCCCGATTATTGAATATTTTGAC
ATTTTGTTTTTCGGTATCATTGACATGATTGTTTTCGGCTCTTTGGATAT
TTTTGGACTGGATACTAAAGAACAGCTTCAAAGCACCAAGTCATTACTTC
TCAACTGGTTCATTCATGCCCAAGATGAGAATCACCGTCTTATCGACGAA
ATGGAGTCCACTTCCGTTGCTCAAGAGATCTCATATTCTTGGAGCAAGGA
ACCTTCCCTCGTGACCGTCGACGCAGAGTAA
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