Gchil10330.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10330.t1
Unique Name	Gchil10330.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	445

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000031_pilon	contig	tig00000031_pilon:64068..65402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_12433T0
Max annot lvl	2759\|Eukaryota
Evalue	1.1e-05
EggNOG OGs	2E93I@1\|root,2SFHA@2759\|Eukaryota,3AV0X@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10330	Gchil10330	Gracilaria chilensis NLEC103_M9 male	gene	tig00000031_pilon 64068..65402 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10330.t1.start1	Gchil10330.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000031_pilon 64068..64070 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10330.t1.CDS1	Gchil10330.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000031_pilon 64068..65402 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10330.t1.exon1	Gchil10330.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000031_pilon 64068..65402 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10330.t1.stop1	Gchil10330.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000031_pilon 65400..65402 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10330.t1	Gchil10330.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000031_pilon 64068..65402 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000031_pilon:64068..65402+
coding sequence from alignment at tig00000031_pilon:64068..65402+

mRNA sequence

>Gchil10330.t1 ID=Gchil10330.t1|Name=Gchil10330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=445bp
MRPARTSKLFALVFFFALVLVCTTLTSLLSLIRSTNNSPLSSAFTPSTKL
PFETFTVAKAAASHPQPAQFTEQLRAFLNIIITQYTAWHRQQRRLCQAHV
SLARSVPLLVFRSNGNAGVGDRIRGILYSYLVAVASNRLFFIDWQKPLPV
SIALRSPPSFNFTYDAALFTESTDDEHAIWGPSQFNHLDVYFSPQRVIVN
QKPNAFAFNNFSSLFERYPQLSLSRDIVEAGLSHFDVQREEVAPFIINAL
FETSSSLRNSLHALRPFRGQPYISLHARLGHGVGEKSGRFNFEQQGLSLE
SVSQCIGSLAATMAQQRALDSVFVVTDTKSAHQFLEAGIRAVLPNARVEL
SPIDATHFFAMHDGKYFPDAFDRQHKFEEVFVDLGLLSMAESMVFFRSGY
GVVAAWLGAITDSVMVEYENCTQIRQGKISATALLSQRLLSDIV*

spliced messenger RNA

>Gchil10330.t1 ID=Gchil10330.t1|Name=Gchil10330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000031_pilon:64068..65402+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCAGCACGCACCTCAAAGCtgttcgcgctcgtcttcttcttcgc
gctcgtgctcgtgTGCACCACCCTCACCTCGCTGCTCTCCCTCATCCGCT
CCACCAACAACTCCCCGCTGTCTTCTGCCTTCACCCCGTCCACAAAGCTC
CCCTTCGAAACCTTCACCGTCGCCAAAGCCGCCGCATCCCATCCGCAACC
CGCCCAATTCACCGAGCAGTTGCGCGCCTTTCTGAACATCATCATCACGC
AATACACCGCGTGGCACCGTCAACAACGCCGTCTTTGTCAGGCGCACGTC
TCGCTCGCGCGCTCCGTCCCGCTGTTGGTGTTCCGTTCAAACGGCAACGC
GGGCGTGGGCGATCGCATCCGAGGCATTCTTTACTCTTATCTCGTCGCCG
TTGCTTCCAACCGTCTCTTCTTCATCGACTGGCAGAAGCCCTTGCCCGTT
TCCATCGCGCTTCGCAGTCCGCCGTCGTTTAACTTCACGTACGATGCTGC
GTTGTTCACGGAAAGCACCGACGATGAGCATGCTATATGGGGACCGTCGC
AATTCAACCATCTGGATGTTTACTTCTCGCCCCAGCGCGTCATCGTCAAT
CAAAAACCTAACGCGTTCGCCTTCAACAACTTCTCCTCGCTGTTCGAACG
ATATCCGCAGCTCAGTCTGTCGCGCGACATCGTGGAAGCCGGACTGAGCC
ACTTTGACGTGCAGCGTGAAGAAGTGGCTCCTTTCATCATCAACGCCTTG
TTCGAAACGTCATCCTCGCTACGAAACTCGCTGCACGCACTGCGACCGTT
TCGTGGACAGCCTTACATCTCGTTGCACGCGCGTCTAGGCCACGGTGTGG
GTGAGAAATCGGGCCGATTCAATTTCGAGCAACAAGGACTCTCTCTAGAA
AGCGTCTCACAATGCATCGGTTCATTGGCCGCAACCATGGCGCAGCAACG
TGCTCTCGATAGCGTTTTTGTTGTGACGGACACCAAGAGCGCTCACCAGT
TTCTGGAAGCTGGCATTCGCGCCGTATTGCCGAACGCTCGCGTCGAATTG
AGTCCAATCGATGCAACCCACTTCTTTGCGATGCACGATGGAAAGTATTT
TCCCGACGCATTCGATAGACAGCACAAGTTTGAGGAGGTGTTTGTGGACC
TTGGTTTGCTGTCCATGGCGGAATCCATGGTGTTTTTCCGCTCGGGTTAT
GGCGTGGTTGCGGCATGGCTCGGGGCAATCACCGACTCTGTTATGGTGGA
GTATGAGAACTGCACTCAGATTCGACAAGGAAAAATAAGCGCCACCGCTC
TCTTGTCTCAACGACTGTTGAGCGACATAGTTTGA

protein sequence of Gchil10330.t1

>Gchil10330.t1 ID=Gchil10330.t1|Name=Gchil10330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=445bp
MRPARTSKLFALVFFFALVLVCTTLTSLLSLIRSTNNSPLSSAFTPSTKL
PFETFTVAKAAASHPQPAQFTEQLRAFLNIIITQYTAWHRQQRRLCQAHV
SLARSVPLLVFRSNGNAGVGDRIRGILYSYLVAVASNRLFFIDWQKPLPV
SIALRSPPSFNFTYDAALFTESTDDEHAIWGPSQFNHLDVYFSPQRVIVN
QKPNAFAFNNFSSLFERYPQLSLSRDIVEAGLSHFDVQREEVAPFIINAL
FETSSSLRNSLHALRPFRGQPYISLHARLGHGVGEKSGRFNFEQQGLSLE
SVSQCIGSLAATMAQQRALDSVFVVTDTKSAHQFLEAGIRAVLPNARVEL
SPIDATHFFAMHDGKYFPDAFDRQHKFEEVFVDLGLLSMAESMVFFRSGY
GVVAAWLGAITDSVMVEYENCTQIRQGKISATALLSQRLLSDIV*

mRNA from alignment at tig00000031_pilon:64068..65402+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10330.t1 ID=Gchil10330.t1|Name=Gchil10330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000031_pilon:64068..65402+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCCAGCACGCACCTCAAAGCtgttcgcgctcgtcttcttcttcgc
gctcgtgctcgtgTGCACCACCCTCACCTCGCTGCTCTCCCTCATCCGCT
CCACCAACAACTCCCCGCTGTCTTCTGCCTTCACCCCGTCCACAAAGCTC
CCCTTCGAAACCTTCACCGTCGCCAAAGCCGCCGCATCCCATCCGCAACC
CGCCCAATTCACCGAGCAGTTGCGCGCCTTTCTGAACATCATCATCACGC
AATACACCGCGTGGCACCGTCAACAACGCCGTCTTTGTCAGGCGCACGTC
TCGCTCGCGCGCTCCGTCCCGCTGTTGGTGTTCCGTTCAAACGGCAACGC
GGGCGTGGGCGATCGCATCCGAGGCATTCTTTACTCTTATCTCGTCGCCG
TTGCTTCCAACCGTCTCTTCTTCATCGACTGGCAGAAGCCCTTGCCCGTT
TCCATCGCGCTTCGCAGTCCGCCGTCGTTTAACTTCACGTACGATGCTGC
GTTGTTCACGGAAAGCACCGACGATGAGCATGCTATATGGGGACCGTCGC
AATTCAACCATCTGGATGTTTACTTCTCGCCCCAGCGCGTCATCGTCAAT
CAAAAACCTAACGCGTTCGCCTTCAACAACTTCTCCTCGCTGTTCGAACG
ATATCCGCAGCTCAGTCTGTCGCGCGACATCGTGGAAGCCGGACTGAGCC
ACTTTGACGTGCAGCGTGAAGAAGTGGCTCCTTTCATCATCAACGCCTTG
TTCGAAACGTCATCCTCGCTACGAAACTCGCTGCACGCACTGCGACCGTT
TCGTGGACAGCCTTACATCTCGTTGCACGCGCGTCTAGGCCACGGTGTGG
GTGAGAAATCGGGCCGATTCAATTTCGAGCAACAAGGACTCTCTCTAGAA
AGCGTCTCACAATGCATCGGTTCATTGGCCGCAACCATGGCGCAGCAACG
TGCTCTCGATAGCGTTTTTGTTGTGACGGACACCAAGAGCGCTCACCAGT
TTCTGGAAGCTGGCATTCGCGCCGTATTGCCGAACGCTCGCGTCGAATTG
AGTCCAATCGATGCAACCCACTTCTTTGCGATGCACGATGGAAAGTATTT
TCCCGACGCATTCGATAGACAGCACAAGTTTGAGGAGGTGTTTGTGGACC
TTGGTTTGCTGTCCATGGCGGAATCCATGGTGTTTTTCCGCTCGGGTTAT
GGCGTGGTTGCGGCATGGCTCGGGGCAATCACCGACTCTGTTATGGTGGA
GTATGAGAACTGCACTCAGATTCGACAAGGAAAAATAAGCGCCACCGCTC
TCTTGTCTCAACGACTGTTGAGCGACATAGTTTGA

Coding sequence (CDS) from alignment at tig00000031_pilon:64068..65402+

>Gchil10330.t1 ID=Gchil10330.t1|Name=Gchil10330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1335bp|location=Sequence derived from alignment at tig00000031_pilon:64068..65402+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCCAGCACGCACCTCAAAGCtgttcgcgctcgtcttcttcttcgc
gctcgtgctcgtgTGCACCACCCTCACCTCGCTGCTCTCCCTCATCCGCT
CCACCAACAACTCCCCGCTGTCTTCTGCCTTCACCCCGTCCACAAAGCTC
CCCTTCGAAACCTTCACCGTCGCCAAAGCCGCCGCATCCCATCCGCAACC
CGCCCAATTCACCGAGCAGTTGCGCGCCTTTCTGAACATCATCATCACGC
AATACACCGCGTGGCACCGTCAACAACGCCGTCTTTGTCAGGCGCACGTC
TCGCTCGCGCGCTCCGTCCCGCTGTTGGTGTTCCGTTCAAACGGCAACGC
GGGCGTGGGCGATCGCATCCGAGGCATTCTTTACTCTTATCTCGTCGCCG
TTGCTTCCAACCGTCTCTTCTTCATCGACTGGCAGAAGCCCTTGCCCGTT
TCCATCGCGCTTCGCAGTCCGCCGTCGTTTAACTTCACGTACGATGCTGC
GTTGTTCACGGAAAGCACCGACGATGAGCATGCTATATGGGGACCGTCGC
AATTCAACCATCTGGATGTTTACTTCTCGCCCCAGCGCGTCATCGTCAAT
CAAAAACCTAACGCGTTCGCCTTCAACAACTTCTCCTCGCTGTTCGAACG
ATATCCGCAGCTCAGTCTGTCGCGCGACATCGTGGAAGCCGGACTGAGCC
ACTTTGACGTGCAGCGTGAAGAAGTGGCTCCTTTCATCATCAACGCCTTG
TTCGAAACGTCATCCTCGCTACGAAACTCGCTGCACGCACTGCGACCGTT
TCGTGGACAGCCTTACATCTCGTTGCACGCGCGTCTAGGCCACGGTGTGG
GTGAGAAATCGGGCCGATTCAATTTCGAGCAACAAGGACTCTCTCTAGAA
AGCGTCTCACAATGCATCGGTTCATTGGCCGCAACCATGGCGCAGCAACG
TGCTCTCGATAGCGTTTTTGTTGTGACGGACACCAAGAGCGCTCACCAGT
TTCTGGAAGCTGGCATTCGCGCCGTATTGCCGAACGCTCGCGTCGAATTG
AGTCCAATCGATGCAACCCACTTCTTTGCGATGCACGATGGAAAGTATTT
TCCCGACGCATTCGATAGACAGCACAAGTTTGAGGAGGTGTTTGTGGACC
TTGGTTTGCTGTCCATGGCGGAATCCATGGTGTTTTTCCGCTCGGGTTAT
GGCGTGGTTGCGGCATGGCTCGGGGCAATCACCGACTCTGTTATGGTGGA
GTATGAGAACTGCACTCAGATTCGACAAGGAAAAATAAGCGCCACCGCTC
TCTTGTCTCAACGACTGTTGAGCGACATAGTTTGA