Gchil10326.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10326.t1
Unique Name	Gchil10326.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000031_pilon	contig	tig00000031_pilon:27104..28279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1068978.AMETH_5761
PFAMs	B_lectin,Inhibitor_I9,P_proprotein,Peptidase_S8
Max annot lvl	201174\|Actinobacteria
Evalue	5.21e-35
EggNOG OGs	COG1404@1\|root,COG1404@2\|Bacteria,2GJYH@201174\|Actinobacteria,4DZ1X@85010\|Pseudonocardiales
Description	Belongs to the peptidase S8 family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10326	Gchil10326	Gracilaria chilensis NLEC103_M9 male	gene	tig00000031_pilon 27104..28279 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10326.t1.start1	Gchil10326.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000031_pilon 27104..27106 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10326.t1.CDS1	Gchil10326.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000031_pilon 27104..28279 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10326.t1.exon1	Gchil10326.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000031_pilon 27104..28279 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10326.t1.stop1	Gchil10326.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000031_pilon 28277..28279 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10326.t1	Gchil10326.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000031_pilon 27104..28279 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000031_pilon:27104..28279+
coding sequence from alignment at tig00000031_pilon:27104..28279+

mRNA sequence

>Gchil10326.t1 ID=Gchil10326.t1|Name=Gchil10326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=392bp
MSFKQISVLVMVFVLIAPTKAAVIDGEYVIQLEGTCNPDCRDALQQALDN
GPDTAGCSLAATGSQLGGFAFEFVSCPTAAGVELAVVSGIVFAQSSTGQV
PTVQLVEQNVELTTQATSTSLWGIDETDGGVKRNLLRNPVRDGLRTCSMS
SNNGAGVNVWILDTGCTPINGGLCTGFHGGANLCEDNYGHGEHVGGTATD
SVFGVAFGAARSCVKVLDDSGGGSVIDVIKGIEFVGENLNLFGKGDVINL
SLGGLRLEVLNNAVKAVRDLGVYFSIAAGNGNDNACNYSPASAEGPGIFT
VQAHTENLKKASFSNYATVLNSCTTLTAPGVDIESVNGIASGTSMAAPHV
AGACAVLLADDKTPTKALLTAKSVIINPLIGLRRRTLGLGC*

spliced messenger RNA

>Gchil10326.t1 ID=Gchil10326.t1|Name=Gchil10326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000031_pilon:27104..28279+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTCAAGCAAATTAGCGTTTTGGTTATGGTCTTCGTACTGATTGC
TCCCACAAAGGCGGCAGTGATCGACGGTGAATACGTGATTCAGCTGGAGG
GCACATGCAATCCAGATTGTCGTGATGCTCTTCAGCAAGCTCTAGACAAT
GGGCCAGATACAGCAGGCTGCTCCCTGGCCGCCACGGGCTCGCAACTCGG
CGGTTTTGCGTTCGAGTTTGTATCATGTCCGACGGCGGCGGGGGTTGAGT
TGGCAGTGGTATCCGGCATCGTCTTCGCCCAGAGCAGCACCGGCCAGGTA
CCGACGGTGCAGCTAGTGGAGCAGAACGTGGAACTGACCACGCAGGCAAC
ATCGACGTCTCTGTGGGGCATTGACGAGACGGACGGCGGTGTCAAGAGAA
ACTTACTACGAAATCCGGTGCGAGACGGGCTGCGAACATGCAGCATGAGC
AGCAACAACGGCGCTGGCGTCAATGTGTGGATCTTGGACACCGGCTGTAC
CCCCATCAACGGCGGGCTGTGCACTGGTTTCCATGGCGGCGCTAATTTGT
GTGAGGACAACTATGGCCACGGTGAACATGTCGGTGGCACCGCAACCGAC
AGTGTTTTTGGTGTGGCCTTCGGAGCCGCGCGCAGCTGCGTCAAAGTGCT
CGATGACAGCGGCGGGGGCTCTGTCATCGATGTAATCAAAGGAATTGAGT
TCGTTGGAGAAAATCTCAACTTGTTCGGGAAGGGCGACGTGATTAACCTT
TCGCTCGGCGGTCTTAGGTTAGAAGTACTCAACAACGCTGTAAAGGCCGT
TCGGGATTTGGGCGTCTACTTTTCCATCGCAGCTGGCAATGGAAACGACA
ACGCTTGCAACTATTCACCAGCATCTGCCGAAGGCCCTGGAATTTTTACA
GTGCAGGCGCACACAGAGAATCTTAAGAAGGCTAGCTTTTCCAACTATGC
TACGGTTCTGAACAGTTGCACCACACTCACAGCTCCTGGAGTTGACATCG
AATCCGTCAATGGTATTGCATCAGGAACCTCCATGGCTGCGCCTCATGTT
GCTGGAGCATGTGCTGTTTTGCTTGCAGACGATAAAACGCCGACCAAGGC
CCTCCTCACAGCTAAGAGCGTCATAATCAACCCCCTGATTGGCCTTAGAC
GTCGCACTTTGGGGCTCGGTTGTTAG

protein sequence of Gchil10326.t1

>Gchil10326.t1 ID=Gchil10326.t1|Name=Gchil10326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=392bp
MSFKQISVLVMVFVLIAPTKAAVIDGEYVIQLEGTCNPDCRDALQQALDN
GPDTAGCSLAATGSQLGGFAFEFVSCPTAAGVELAVVSGIVFAQSSTGQV
PTVQLVEQNVELTTQATSTSLWGIDETDGGVKRNLLRNPVRDGLRTCSMS
SNNGAGVNVWILDTGCTPINGGLCTGFHGGANLCEDNYGHGEHVGGTATD
SVFGVAFGAARSCVKVLDDSGGGSVIDVIKGIEFVGENLNLFGKGDVINL
SLGGLRLEVLNNAVKAVRDLGVYFSIAAGNGNDNACNYSPASAEGPGIFT
VQAHTENLKKASFSNYATVLNSCTTLTAPGVDIESVNGIASGTSMAAPHV
AGACAVLLADDKTPTKALLTAKSVIINPLIGLRRRTLGLGC*

mRNA from alignment at tig00000031_pilon:27104..28279+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10326.t1 ID=Gchil10326.t1|Name=Gchil10326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000031_pilon:27104..28279+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTCAAGCAAATTAGCGTTTTGGTTATGGTCTTCGTACTGATTGC
TCCCACAAAGGCGGCAGTGATCGACGGTGAATACGTGATTCAGCTGGAGG
GCACATGCAATCCAGATTGTCGTGATGCTCTTCAGCAAGCTCTAGACAAT
GGGCCAGATACAGCAGGCTGCTCCCTGGCCGCCACGGGCTCGCAACTCGG
CGGTTTTGCGTTCGAGTTTGTATCATGTCCGACGGCGGCGGGGGTTGAGT
TGGCAGTGGTATCCGGCATCGTCTTCGCCCAGAGCAGCACCGGCCAGGTA
CCGACGGTGCAGCTAGTGGAGCAGAACGTGGAACTGACCACGCAGGCAAC
ATCGACGTCTCTGTGGGGCATTGACGAGACGGACGGCGGTGTCAAGAGAA
ACTTACTACGAAATCCGGTGCGAGACGGGCTGCGAACATGCAGCATGAGC
AGCAACAACGGCGCTGGCGTCAATGTGTGGATCTTGGACACCGGCTGTAC
CCCCATCAACGGCGGGCTGTGCACTGGTTTCCATGGCGGCGCTAATTTGT
GTGAGGACAACTATGGCCACGGTGAACATGTCGGTGGCACCGCAACCGAC
AGTGTTTTTGGTGTGGCCTTCGGAGCCGCGCGCAGCTGCGTCAAAGTGCT
CGATGACAGCGGCGGGGGCTCTGTCATCGATGTAATCAAAGGAATTGAGT
TCGTTGGAGAAAATCTCAACTTGTTCGGGAAGGGCGACGTGATTAACCTT
TCGCTCGGCGGTCTTAGGTTAGAAGTACTCAACAACGCTGTAAAGGCCGT
TCGGGATTTGGGCGTCTACTTTTCCATCGCAGCTGGCAATGGAAACGACA
ACGCTTGCAACTATTCACCAGCATCTGCCGAAGGCCCTGGAATTTTTACA
GTGCAGGCGCACACAGAGAATCTTAAGAAGGCTAGCTTTTCCAACTATGC
TACGGTTCTGAACAGTTGCACCACACTCACAGCTCCTGGAGTTGACATCG
AATCCGTCAATGGTATTGCATCAGGAACCTCCATGGCTGCGCCTCATGTT
GCTGGAGCATGTGCTGTTTTGCTTGCAGACGATAAAACGCCGACCAAGGC
CCTCCTCACAGCTAAGAGCGTCATAATCAACCCCCTGATTGGCCTTAGAC
GTCGCACTTTGGGGCTCGGTTGTTAG

Coding sequence (CDS) from alignment at tig00000031_pilon:27104..28279+

>Gchil10326.t1 ID=Gchil10326.t1|Name=Gchil10326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000031_pilon:27104..28279+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTCAAGCAAATTAGCGTTTTGGTTATGGTCTTCGTACTGATTGC
TCCCACAAAGGCGGCAGTGATCGACGGTGAATACGTGATTCAGCTGGAGG
GCACATGCAATCCAGATTGTCGTGATGCTCTTCAGCAAGCTCTAGACAAT
GGGCCAGATACAGCAGGCTGCTCCCTGGCCGCCACGGGCTCGCAACTCGG
CGGTTTTGCGTTCGAGTTTGTATCATGTCCGACGGCGGCGGGGGTTGAGT
TGGCAGTGGTATCCGGCATCGTCTTCGCCCAGAGCAGCACCGGCCAGGTA
CCGACGGTGCAGCTAGTGGAGCAGAACGTGGAACTGACCACGCAGGCAAC
ATCGACGTCTCTGTGGGGCATTGACGAGACGGACGGCGGTGTCAAGAGAA
ACTTACTACGAAATCCGGTGCGAGACGGGCTGCGAACATGCAGCATGAGC
AGCAACAACGGCGCTGGCGTCAATGTGTGGATCTTGGACACCGGCTGTAC
CCCCATCAACGGCGGGCTGTGCACTGGTTTCCATGGCGGCGCTAATTTGT
GTGAGGACAACTATGGCCACGGTGAACATGTCGGTGGCACCGCAACCGAC
AGTGTTTTTGGTGTGGCCTTCGGAGCCGCGCGCAGCTGCGTCAAAGTGCT
CGATGACAGCGGCGGGGGCTCTGTCATCGATGTAATCAAAGGAATTGAGT
TCGTTGGAGAAAATCTCAACTTGTTCGGGAAGGGCGACGTGATTAACCTT
TCGCTCGGCGGTCTTAGGTTAGAAGTACTCAACAACGCTGTAAAGGCCGT
TCGGGATTTGGGCGTCTACTTTTCCATCGCAGCTGGCAATGGAAACGACA
ACGCTTGCAACTATTCACCAGCATCTGCCGAAGGCCCTGGAATTTTTACA
GTGCAGGCGCACACAGAGAATCTTAAGAAGGCTAGCTTTTCCAACTATGC
TACGGTTCTGAACAGTTGCACCACACTCACAGCTCCTGGAGTTGACATCG
AATCCGTCAATGGTATTGCATCAGGAACCTCCATGGCTGCGCCTCATGTT
GCTGGAGCATGTGCTGTTTTGCTTGCAGACGATAAAACGCCGACCAAGGC
CCTCCTCACAGCTAAGAGCGTCATAATCAACCCCCTGATTGGCCTTAGAC
GTCGCACTTTGGGGCTCGGTTGTTAG