Gchil1030.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1030.t1
Unique NameGchil1030.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length523
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000144_piloncontigtig00000144_pilon:80805..82373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_002169684.2
PFAMsFAD_binding_8,Ferric_reduct,NAD_binding_6
Max annot lvl2759|Eukaryota
KEGG koko:K00521,ko:K13411
KEGG TC5.B.1.2
KEGG Pathwayko04013,ko04624,map04013,map04624
Evalue5.53e-46
EggNOG OGsKOG0039@1|root,KOG0039@2759|Eukaryota
EC1.16.1.7,1.6.3.1
Descriptionoxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
COG categoryC
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1030Gchil1030Gracilaria chilensis NLEC103_M9 malegenetig00000144_pilon 80805..82373 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1030.t1.start1Gchil1030.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000144_pilon 80805..80807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1030.t1.CDS1Gchil1030.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 80805..82373 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1030.t1.exon1Gchil1030.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 80805..82373 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1030.t1.stop1Gchil1030.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000144_pilon 82371..82373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1030.t1Gchil1030.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000144_pilon 80805..82373 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1030.t1 ID=Gchil1030.t1|Name=Gchil1030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=523bp
MENAWKPYEDSRLPFDRFRYILFHPFLLKRFFFLPSLNLVGLTIIEIIVA
LALVAGTVVLGYLSKDVDAEQSGNIAQVYWVPLFILILYRSPVAVVFGIS
FERSMFWHAFFAVLALGYGVWHGVSCMYWAPLDDDGDSGQPVRGFEAFVR
GEHKSEFLSGGIIIIIMAVIIITSIHPIRRFVRRIWLWSHHILAIAAIVF
CALHGAGAAVAAFAFYIADRLFGYVFQAYWQHVRVGSETSAALLPSGFVR
LSMPRTFSFTPGQYICINIPSISLFEYHTFSIATCPTDGKICLLIKSEGH
WTKKLCNRIEKLSSLSNEEVPIRAFLHGPIGSVALDWQSTSKYQTFVLVA
GGVGITPLVSFYRHVLTQTLRGRPVRKVLLVWAVRTRTLVDDVISTQRHA
LGDGQIQWRDYNSDWEDPRGISNHDFQAQIHITRASDSQDAVANNGAYSS
ADVENIFVKVQWKSGRPNLKHIFSDIRETMMEKGRVGVLGCGPSALIREV
VRASRHASTHGTSFDVHLEHFY*
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spliced messenger RNA

>Gchil1030.t1 ID=Gchil1030.t1|Name=Gchil1030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000144_pilon:80805..82373+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACGCCTGGAAACCCTACGAAGATTCCCGCTTACCGTTCGACAG
ATTTCGATACATTCTCTTTCATCCTTTTCTCCTCAAGCGGTTTTTTTTCC
TGCCATCCCTCAACCTCGTCGGCCTAACAATCATTGAAATAATTGTCGCC
TTGGCTCTGGTGGCCGGTACAGTTGTGCTGGGATATCTCTCCAAGGATGT
AGACGCCGAACAATCTGGAAATATCGCTCAAGTGTACTGGGTTCCCTTGT
TCATTCTAATCCTCTACCGCTCTCCTGTCGCCGTCGTGTTTGGCATTTCG
TTTGAGAGATCCATGTTCTGGCATGCCTTCTTCGCAGTTCTTGCACTTGG
ATACGGCGTGTGGCACGGTGTTAGCTGCATGTACTGGGCGCCCCTCGATG
ACGATGGTGATAGTGGTCAACCAGTTCGCGGCTTTGAGGCCTTCGTCAGA
GGTGAGCACAAATCTGAGTTTCTTTCGGGTGGTatcattatcatcattat
ggccgtcatcatcatcacatcCATTCACCCTATTCGCCGATTCGTGCGGC
GTATATGGTTGTGGAGCCACCACATCCTAGCCATCGCAGCCATTGTTTTC
TGCGCCTTGCATGGAGCAGGTGCCGCTGTTGCTGCATTTGCATTCTACAT
CGCCGATCGCCTGTTTGGATATGTGTTCCAAGCATATTGGCAGCATGTTC
GAGTTGGTTCCGAAACCAGCGCCGCTCTGCTCCCGTCCGGATTCGTGAGG
CTATCGATGCCAAGGACCTTTTCTTTCACTCCGGGCCAATATATTTGCAT
CAACATTCCTTCTATTTCTCTCTTTGAGTACCATACTTTTTCCATTGCTA
CGTGTCCTACAGATGGAAAGATTTGTCTTCTGATCAAATCAGAAGGGCAT
TGGACAAAAAAGCTTTGCAACAGAATCGAAAAACTTTCCTCACTCAGTAA
TGAGGAAGTTCCAATACGCGCTTTTCTTCATGGCCCAATTGGCAGTGTCG
CCCTGGACTGGCAGTCTACATCAAAATATCAAACGTTTGTGTTAGTTGCT
GGCGGTGTTGGGATTACACCGCTGGTATCATTCTACCGACACGTGCTGAC
ACAAACGTTGAGGGGGAGACCTGTCCGAAAAGTCCTGCTCGTATGGGCTG
TGCGGACTCGCACTCTTGTTGATGACGTTATTTCCACTCAGCGTCATGCG
CTCGGTGACGGTCAAATTCAATGGCGGGACTACAATTCAGATTGGGAGGA
CCCTCGAGGCATATCGAACCATGACTTCCAAGCACAGATCCATATCACTC
GGGCGAGTGACAGTCAGGATGCGGTCGCTAACAACGGGGCGTACTCTTCT
GCTGATGTGGAGAATATTTTTGTAAAAGTGCAATGGAAAAGCGGGCGGCC
AAACCTGAAGCACATTTTTTCGGATATTCGTGAGACCATGATGGAGAAGG
GGCGAGTTGGTGTGCTGGGCTGCGGCCCCAGTGCACTTATTCGAGAAGTC
GTCAGAGCGTCCAGACACGCTTCCACGCATGGCACCAGCTTTGACGTACA
CCTTGAGCATTTCTACTGA
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protein sequence of Gchil1030.t1

>Gchil1030.t1 ID=Gchil1030.t1|Name=Gchil1030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=523bp
MENAWKPYEDSRLPFDRFRYILFHPFLLKRFFFLPSLNLVGLTIIEIIVA
LALVAGTVVLGYLSKDVDAEQSGNIAQVYWVPLFILILYRSPVAVVFGIS
FERSMFWHAFFAVLALGYGVWHGVSCMYWAPLDDDGDSGQPVRGFEAFVR
GEHKSEFLSGGIIIIIMAVIIITSIHPIRRFVRRIWLWSHHILAIAAIVF
CALHGAGAAVAAFAFYIADRLFGYVFQAYWQHVRVGSETSAALLPSGFVR
LSMPRTFSFTPGQYICINIPSISLFEYHTFSIATCPTDGKICLLIKSEGH
WTKKLCNRIEKLSSLSNEEVPIRAFLHGPIGSVALDWQSTSKYQTFVLVA
GGVGITPLVSFYRHVLTQTLRGRPVRKVLLVWAVRTRTLVDDVISTQRHA
LGDGQIQWRDYNSDWEDPRGISNHDFQAQIHITRASDSQDAVANNGAYSS
ADVENIFVKVQWKSGRPNLKHIFSDIRETMMEKGRVGVLGCGPSALIREV
VRASRHASTHGTSFDVHLEHFY*
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mRNA from alignment at tig00000144_pilon:80805..82373+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1030.t1 ID=Gchil1030.t1|Name=Gchil1030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000144_pilon:80805..82373+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACGCCTGGAAACCCTACGAAGATTCCCGCTTACCGTTCGACAG
ATTTCGATACATTCTCTTTCATCCTTTTCTCCTCAAGCGGTTTTTTTTCC
TGCCATCCCTCAACCTCGTCGGCCTAACAATCATTGAAATAATTGTCGCC
TTGGCTCTGGTGGCCGGTACAGTTGTGCTGGGATATCTCTCCAAGGATGT
AGACGCCGAACAATCTGGAAATATCGCTCAAGTGTACTGGGTTCCCTTGT
TCATTCTAATCCTCTACCGCTCTCCTGTCGCCGTCGTGTTTGGCATTTCG
TTTGAGAGATCCATGTTCTGGCATGCCTTCTTCGCAGTTCTTGCACTTGG
ATACGGCGTGTGGCACGGTGTTAGCTGCATGTACTGGGCGCCCCTCGATG
ACGATGGTGATAGTGGTCAACCAGTTCGCGGCTTTGAGGCCTTCGTCAGA
GGTGAGCACAAATCTGAGTTTCTTTCGGGTGGTatcattatcatcattat
ggccgtcatcatcatcacatcCATTCACCCTATTCGCCGATTCGTGCGGC
GTATATGGTTGTGGAGCCACCACATCCTAGCCATCGCAGCCATTGTTTTC
TGCGCCTTGCATGGAGCAGGTGCCGCTGTTGCTGCATTTGCATTCTACAT
CGCCGATCGCCTGTTTGGATATGTGTTCCAAGCATATTGGCAGCATGTTC
GAGTTGGTTCCGAAACCAGCGCCGCTCTGCTCCCGTCCGGATTCGTGAGG
CTATCGATGCCAAGGACCTTTTCTTTCACTCCGGGCCAATATATTTGCAT
CAACATTCCTTCTATTTCTCTCTTTGAGTACCATACTTTTTCCATTGCTA
CGTGTCCTACAGATGGAAAGATTTGTCTTCTGATCAAATCAGAAGGGCAT
TGGACAAAAAAGCTTTGCAACAGAATCGAAAAACTTTCCTCACTCAGTAA
TGAGGAAGTTCCAATACGCGCTTTTCTTCATGGCCCAATTGGCAGTGTCG
CCCTGGACTGGCAGTCTACATCAAAATATCAAACGTTTGTGTTAGTTGCT
GGCGGTGTTGGGATTACACCGCTGGTATCATTCTACCGACACGTGCTGAC
ACAAACGTTGAGGGGGAGACCTGTCCGAAAAGTCCTGCTCGTATGGGCTG
TGCGGACTCGCACTCTTGTTGATGACGTTATTTCCACTCAGCGTCATGCG
CTCGGTGACGGTCAAATTCAATGGCGGGACTACAATTCAGATTGGGAGGA
CCCTCGAGGCATATCGAACCATGACTTCCAAGCACAGATCCATATCACTC
GGGCGAGTGACAGTCAGGATGCGGTCGCTAACAACGGGGCGTACTCTTCT
GCTGATGTGGAGAATATTTTTGTAAAAGTGCAATGGAAAAGCGGGCGGCC
AAACCTGAAGCACATTTTTTCGGATATTCGTGAGACCATGATGGAGAAGG
GGCGAGTTGGTGTGCTGGGCTGCGGCCCCAGTGCACTTATTCGAGAAGTC
GTCAGAGCGTCCAGACACGCTTCCACGCATGGCACCAGCTTTGACGTACA
CCTTGAGCATTTCTACTGA
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Coding sequence (CDS) from alignment at tig00000144_pilon:80805..82373+

>Gchil1030.t1 ID=Gchil1030.t1|Name=Gchil1030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00000144_pilon:80805..82373+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACGCCTGGAAACCCTACGAAGATTCCCGCTTACCGTTCGACAG
ATTTCGATACATTCTCTTTCATCCTTTTCTCCTCAAGCGGTTTTTTTTCC
TGCCATCCCTCAACCTCGTCGGCCTAACAATCATTGAAATAATTGTCGCC
TTGGCTCTGGTGGCCGGTACAGTTGTGCTGGGATATCTCTCCAAGGATGT
AGACGCCGAACAATCTGGAAATATCGCTCAAGTGTACTGGGTTCCCTTGT
TCATTCTAATCCTCTACCGCTCTCCTGTCGCCGTCGTGTTTGGCATTTCG
TTTGAGAGATCCATGTTCTGGCATGCCTTCTTCGCAGTTCTTGCACTTGG
ATACGGCGTGTGGCACGGTGTTAGCTGCATGTACTGGGCGCCCCTCGATG
ACGATGGTGATAGTGGTCAACCAGTTCGCGGCTTTGAGGCCTTCGTCAGA
GGTGAGCACAAATCTGAGTTTCTTTCGGGTGGTatcattatcatcattat
ggccgtcatcatcatcacatcCATTCACCCTATTCGCCGATTCGTGCGGC
GTATATGGTTGTGGAGCCACCACATCCTAGCCATCGCAGCCATTGTTTTC
TGCGCCTTGCATGGAGCAGGTGCCGCTGTTGCTGCATTTGCATTCTACAT
CGCCGATCGCCTGTTTGGATATGTGTTCCAAGCATATTGGCAGCATGTTC
GAGTTGGTTCCGAAACCAGCGCCGCTCTGCTCCCGTCCGGATTCGTGAGG
CTATCGATGCCAAGGACCTTTTCTTTCACTCCGGGCCAATATATTTGCAT
CAACATTCCTTCTATTTCTCTCTTTGAGTACCATACTTTTTCCATTGCTA
CGTGTCCTACAGATGGAAAGATTTGTCTTCTGATCAAATCAGAAGGGCAT
TGGACAAAAAAGCTTTGCAACAGAATCGAAAAACTTTCCTCACTCAGTAA
TGAGGAAGTTCCAATACGCGCTTTTCTTCATGGCCCAATTGGCAGTGTCG
CCCTGGACTGGCAGTCTACATCAAAATATCAAACGTTTGTGTTAGTTGCT
GGCGGTGTTGGGATTACACCGCTGGTATCATTCTACCGACACGTGCTGAC
ACAAACGTTGAGGGGGAGACCTGTCCGAAAAGTCCTGCTCGTATGGGCTG
TGCGGACTCGCACTCTTGTTGATGACGTTATTTCCACTCAGCGTCATGCG
CTCGGTGACGGTCAAATTCAATGGCGGGACTACAATTCAGATTGGGAGGA
CCCTCGAGGCATATCGAACCATGACTTCCAAGCACAGATCCATATCACTC
GGGCGAGTGACAGTCAGGATGCGGTCGCTAACAACGGGGCGTACTCTTCT
GCTGATGTGGAGAATATTTTTGTAAAAGTGCAATGGAAAAGCGGGCGGCC
AAACCTGAAGCACATTTTTTCGGATATTCGTGAGACCATGATGGAGAAGG
GGCGAGTTGGTGTGCTGGGCTGCGGCCCCAGTGCACTTATTCGAGAAGTC
GTCAGAGCGTCCAGACACGCTTCCACGCATGGCACCAGCTTTGACGTACA
CCTTGAGCATTTCTACTGA
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