Gchil1029.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1029.t1
Unique NameGchil1029.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000144_piloncontigtig00000144_pilon:78245..79015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1029Gchil1029Gracilaria chilensis NLEC103_M9 malegenetig00000144_pilon 78245..79015 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1029.t1.stop1Gchil1029.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000144_pilon 78245..78247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1029.t1.CDS1Gchil1029.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 78245..79015 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1029.t1.exon1Gchil1029.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 78245..79015 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1029.t1.start1Gchil1029.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000144_pilon 79013..79015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1029.t1Gchil1029.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000144_pilon 78245..79015 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1029.t1 ID=Gchil1029.t1|Name=Gchil1029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=257bp
MPRLVAINALCLALCTLLCLRSAAATARFVHHRGASRSLLQYGAAEARQH
FLFELDTADTILNASLHTLHTDILSSHELEVQRISESLFNISATLFFDAL
PGEMQYIISVATHRTSGARNDVYSVSRNHSVYGMAFYEDNLDSTALVSGD
YGNGLNLIAPEFERQSVRLKYVAYAPEGVKLHPTLYVLARGEHHSVLSEK
DVRFREDSLIIRLHPGRTGSALVIVEAADLLLDGESFETVIIVRVANSPR
RYDFDT*
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spliced messenger RNA

>Gchil1029.t1 ID=Gchil1029.t1|Name=Gchil1029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000144_pilon:78245..79015- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGTCTCGTCGCTATTAACGCCCTGTGCTTAGCGCTTTGCACGCT
TCTCTGCCTACGATCTGCTGCTGCCACCGCCCGTTTTGTGCACCATCGCG
GCGCAAGTCGCTCTCTTTTGCAGTATGGCGCCGCAGAGGCCAGGCAACAC
TTTCTGTTCGAACTGGATACGGCTGATACAATTCTCAACGCCTCGTTGCA
CACCTTGCACACCGATATCTTATCATCGCACGAACTCGAGGTACAACGTA
TTTCGGAATCTTTGTTCAACATCTCGGCCACGCTGTTTTTCGATGCCCTG
CCTGGCGAGATGCAGTACATCATCTCCGTCGCAACACACCGCACAAGTGG
CGCTCGAAACGACGTATATTCCGTATCCCGCAATCATTCCGTGTACGGCA
TGGCGTTTTACGAAGACAACCTCGATTCAACCGCGCTTGTTTCGGGCGAT
TATGGAAACGGACTGAACCTGATTGCTCCCGAGTTCGAGCGCCAATCGGT
GAGACTAAAGTACGTGGCTTACGCGCCAGAAGGCGTCAAACTACATCCCA
CGCTGTACGTCCTGGCGCGCGGCGAACACCACTCTGTGTTGAGCGAGAAG
GATGTGCGCTTCAGGGAGGATAGCTTGATCATTAGGCTTCATCCCGGTCG
CACTGGGTCTGCTTTGGTCATTGTCGAGGCCGCCGACTTGTTGCTGGACG
GCGAATCATTCGAAACCGTTATTATTGTCCGCGTCGCAAATTCGCCCAGA
CGGTATGACTTCGACACATAG
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protein sequence of Gchil1029.t1

>Gchil1029.t1 ID=Gchil1029.t1|Name=Gchil1029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=257bp
MPRLVAINALCLALCTLLCLRSAAATARFVHHRGASRSLLQYGAAEARQH
FLFELDTADTILNASLHTLHTDILSSHELEVQRISESLFNISATLFFDAL
PGEMQYIISVATHRTSGARNDVYSVSRNHSVYGMAFYEDNLDSTALVSGD
YGNGLNLIAPEFERQSVRLKYVAYAPEGVKLHPTLYVLARGEHHSVLSEK
DVRFREDSLIIRLHPGRTGSALVIVEAADLLLDGESFETVIIVRVANSPR
RYDFDT*
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mRNA from alignment at tig00000144_pilon:78245..79015-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1029.t1 ID=Gchil1029.t1|Name=Gchil1029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000144_pilon:78245..79015- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCGTCTCGTCGCTATTAACGCCCTGTGCTTAGCGCTTTGCACGCT
TCTCTGCCTACGATCTGCTGCTGCCACCGCCCGTTTTGTGCACCATCGCG
GCGCAAGTCGCTCTCTTTTGCAGTATGGCGCCGCAGAGGCCAGGCAACAC
TTTCTGTTCGAACTGGATACGGCTGATACAATTCTCAACGCCTCGTTGCA
CACCTTGCACACCGATATCTTATCATCGCACGAACTCGAGGTACAACGTA
TTTCGGAATCTTTGTTCAACATCTCGGCCACGCTGTTTTTCGATGCCCTG
CCTGGCGAGATGCAGTACATCATCTCCGTCGCAACACACCGCACAAGTGG
CGCTCGAAACGACGTATATTCCGTATCCCGCAATCATTCCGTGTACGGCA
TGGCGTTTTACGAAGACAACCTCGATTCAACCGCGCTTGTTTCGGGCGAT
TATGGAAACGGACTGAACCTGATTGCTCCCGAGTTCGAGCGCCAATCGGT
GAGACTAAAGTACGTGGCTTACGCGCCAGAAGGCGTCAAACTACATCCCA
CGCTGTACGTCCTGGCGCGCGGCGAACACCACTCTGTGTTGAGCGAGAAG
GATGTGCGCTTCAGGGAGGATAGCTTGATCATTAGGCTTCATCCCGGTCG
CACTGGGTCTGCTTTGGTCATTGTCGAGGCCGCCGACTTGTTGCTGGACG
GCGAATCATTCGAAACCGTTATTATTGTCCGCGTCGCAAATTCGCCCAGA
CGGTATGACTTCGACACATAG
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Coding sequence (CDS) from alignment at tig00000144_pilon:78245..79015-

>Gchil1029.t1 ID=Gchil1029.t1|Name=Gchil1029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000144_pilon:78245..79015- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCGTCTCGTCGCTATTAACGCCCTGTGCTTAGCGCTTTGCACGCT
TCTCTGCCTACGATCTGCTGCTGCCACCGCCCGTTTTGTGCACCATCGCG
GCGCAAGTCGCTCTCTTTTGCAGTATGGCGCCGCAGAGGCCAGGCAACAC
TTTCTGTTCGAACTGGATACGGCTGATACAATTCTCAACGCCTCGTTGCA
CACCTTGCACACCGATATCTTATCATCGCACGAACTCGAGGTACAACGTA
TTTCGGAATCTTTGTTCAACATCTCGGCCACGCTGTTTTTCGATGCCCTG
CCTGGCGAGATGCAGTACATCATCTCCGTCGCAACACACCGCACAAGTGG
CGCTCGAAACGACGTATATTCCGTATCCCGCAATCATTCCGTGTACGGCA
TGGCGTTTTACGAAGACAACCTCGATTCAACCGCGCTTGTTTCGGGCGAT
TATGGAAACGGACTGAACCTGATTGCTCCCGAGTTCGAGCGCCAATCGGT
GAGACTAAAGTACGTGGCTTACGCGCCAGAAGGCGTCAAACTACATCCCA
CGCTGTACGTCCTGGCGCGCGGCGAACACCACTCTGTGTTGAGCGAGAAG
GATGTGCGCTTCAGGGAGGATAGCTTGATCATTAGGCTTCATCCCGGTCG
CACTGGGTCTGCTTTGGTCATTGTCGAGGCCGCCGACTTGTTGCTGGACG
GCGAATCATTCGAAACCGTTATTATTGTCCGCGTCGCAAATTCGCCCAGA
CGGTATGACTTCGACACATAG
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