Gchil10255.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10255.t1
Unique NameGchil10255.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length392
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:133149..134324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1068978.AMETH_5761
PFAMsB_lectin,Inhibitor_I9,P_proprotein,Peptidase_S8
Max annot lvl201174|Actinobacteria
Evalue1.4e-35
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria,2GJYH@201174|Actinobacteria,4DZ1X@85010|Pseudonocardiales
DescriptionBelongs to the peptidase S8 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10255Gchil10255Gracilaria chilensis NLEC103_M9 malegenetig00000065_pilon 133149..134324 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10255.t1.start1Gchil10255.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000065_pilon 133149..133151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10255.t1.CDS1Gchil10255.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000065_pilon 133149..134324 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10255.t1.exon1Gchil10255.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000065_pilon 133149..134324 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10255.t1.stop1Gchil10255.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000065_pilon 134322..134324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10255.t1Gchil10255.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000065_pilon 133149..134324 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10255.t1 ID=Gchil10255.t1|Name=Gchil10255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=392bp
MSFKQISVLVMVFVLIAPTKAAVIDGEYVIQLEGTCNPDCRDALQQALDN
GPDTAGCSLAATGSQLGGFAFEFVSCPTAAGVELAVVSGIVFAQSSTGQV
PTVQLVEQNVELTTQATSTSLWGIDETDGGVKRNLLRNPVRDGLRTCSMS
SNNGAGVNVWILDTGCTPINGGLCTGFHGGANLCEDNYGHGEHVGGTATD
SVFGVAFGAARSCVKVLDDSGGGSVIDVIKGIEFVGENLNLFGKGDVINL
SLGGLRLEVLNNAVKAVRDLGVYFAIAAGNGNDNACNYSPASAEGPGIFT
VQAHTENLKKASFSNYATVLNSCTTLTAPGVDIESVNGIASGTSMAAPHV
AGACAVLLADDKTPTKALLTAKSVIINPLIGLRRRTLGLGC*
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spliced messenger RNA

>Gchil10255.t1 ID=Gchil10255.t1|Name=Gchil10255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000065_pilon:133149..134324+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTCAAGCAAATTAGCGTTTTGGTTATGGTCTTCGTACTGATTGC
TCCCACAAAGGCGGCAGTGATCGACGGTGAATACGTGATTCAGCTGGAGG
GCACATGCAATCCAGATTGTCGTGATGCTCTTCAGCAAGCTCTAGACAAT
GGGCCAGATACAGCAGGCTGCTCCCTGGCCGCCACGGGCTCGCAACTCGG
CGGTTTTGCGTTCGAGTTTGTATCATGTCCGACGGCGGCGGGGGTTGAGT
TGGCAGTGGTATCCGGCATCGTCTTCGCCCAGAGCAGCACCGGCCAGGTA
CCGACGGTGCAGCTAGTGGAGCAGAACGTGGAACTGACCACGCAGGCAAC
ATCGACGTCTCTGTGGGGCATTGACGAGACGGACGGCGGTGTCAAGAGAA
ACTTACTACGAAATCCGGTGCGAGACGGGCTGCGAACATGCAGCATGAGC
AGCAACAACGGCGCTGGCGTCAATGTGTGGATCTTGGACACCGGCTGTAC
CCCCATCAACGGCGGGCTGTGCACTGGTTTCCATGGCGGCGCTAATTTGT
GTGAGGACAACTATGGCCACGGTGAACATGTCGGTGGCACCGCAACCGAC
AGTGTTTTTGGTGTGGCCTTCGGAGCCGCGCGCAGCTGCGTCAAAGTGCT
CGATGACAGCGGCGGGGGCTCTGTCATCGATGTAATCAAAGGAATTGAGT
TCGTTGGAGAAAATCTCAACCTGTTCGGGAAGGGCGACGTGATTAACCTT
TCGCTCGGCGGTCTTAGGTTAGAAGTACTCAACAACGCTGTAAAGGCCGT
TCGGGATTTGGGCGTCTACTTTGCCATCGCAGCTGGCAATGGAAACGACA
ACGCTTGCAACTATTCACCAGCATCTGCCGAAGGCCCTGGAATTTTTACA
GTGCAGGCGCACACAGAGAATCTTAAGAAGGCTAGCTTTTCCAACTATGC
TACGGTTCTGAACAGTTGCACCACACTCACAGCTCCTGGAGTTGACATCG
AATCCGTCAATGGTATTGCATCAGGAACCTCCATGGCTGCGCCTCATGTT
GCTGGAGCATGTGCTGTTTTGCTTGCAGACGATAAAACGCCGACCAAGGC
CCTCCTCACAGCTAAGAGCGTCATAATCAACCCCCTGATTGGCCTTAGAC
GTCGCACTTTGGGGCTCGGTTGTTAG
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protein sequence of Gchil10255.t1

>Gchil10255.t1 ID=Gchil10255.t1|Name=Gchil10255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=392bp
MSFKQISVLVMVFVLIAPTKAAVIDGEYVIQLEGTCNPDCRDALQQALDN
GPDTAGCSLAATGSQLGGFAFEFVSCPTAAGVELAVVSGIVFAQSSTGQV
PTVQLVEQNVELTTQATSTSLWGIDETDGGVKRNLLRNPVRDGLRTCSMS
SNNGAGVNVWILDTGCTPINGGLCTGFHGGANLCEDNYGHGEHVGGTATD
SVFGVAFGAARSCVKVLDDSGGGSVIDVIKGIEFVGENLNLFGKGDVINL
SLGGLRLEVLNNAVKAVRDLGVYFAIAAGNGNDNACNYSPASAEGPGIFT
VQAHTENLKKASFSNYATVLNSCTTLTAPGVDIESVNGIASGTSMAAPHV
AGACAVLLADDKTPTKALLTAKSVIINPLIGLRRRTLGLGC*
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mRNA from alignment at tig00000065_pilon:133149..134324+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10255.t1 ID=Gchil10255.t1|Name=Gchil10255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000065_pilon:133149..134324+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTCAAGCAAATTAGCGTTTTGGTTATGGTCTTCGTACTGATTGC
TCCCACAAAGGCGGCAGTGATCGACGGTGAATACGTGATTCAGCTGGAGG
GCACATGCAATCCAGATTGTCGTGATGCTCTTCAGCAAGCTCTAGACAAT
GGGCCAGATACAGCAGGCTGCTCCCTGGCCGCCACGGGCTCGCAACTCGG
CGGTTTTGCGTTCGAGTTTGTATCATGTCCGACGGCGGCGGGGGTTGAGT
TGGCAGTGGTATCCGGCATCGTCTTCGCCCAGAGCAGCACCGGCCAGGTA
CCGACGGTGCAGCTAGTGGAGCAGAACGTGGAACTGACCACGCAGGCAAC
ATCGACGTCTCTGTGGGGCATTGACGAGACGGACGGCGGTGTCAAGAGAA
ACTTACTACGAAATCCGGTGCGAGACGGGCTGCGAACATGCAGCATGAGC
AGCAACAACGGCGCTGGCGTCAATGTGTGGATCTTGGACACCGGCTGTAC
CCCCATCAACGGCGGGCTGTGCACTGGTTTCCATGGCGGCGCTAATTTGT
GTGAGGACAACTATGGCCACGGTGAACATGTCGGTGGCACCGCAACCGAC
AGTGTTTTTGGTGTGGCCTTCGGAGCCGCGCGCAGCTGCGTCAAAGTGCT
CGATGACAGCGGCGGGGGCTCTGTCATCGATGTAATCAAAGGAATTGAGT
TCGTTGGAGAAAATCTCAACCTGTTCGGGAAGGGCGACGTGATTAACCTT
TCGCTCGGCGGTCTTAGGTTAGAAGTACTCAACAACGCTGTAAAGGCCGT
TCGGGATTTGGGCGTCTACTTTGCCATCGCAGCTGGCAATGGAAACGACA
ACGCTTGCAACTATTCACCAGCATCTGCCGAAGGCCCTGGAATTTTTACA
GTGCAGGCGCACACAGAGAATCTTAAGAAGGCTAGCTTTTCCAACTATGC
TACGGTTCTGAACAGTTGCACCACACTCACAGCTCCTGGAGTTGACATCG
AATCCGTCAATGGTATTGCATCAGGAACCTCCATGGCTGCGCCTCATGTT
GCTGGAGCATGTGCTGTTTTGCTTGCAGACGATAAAACGCCGACCAAGGC
CCTCCTCACAGCTAAGAGCGTCATAATCAACCCCCTGATTGGCCTTAGAC
GTCGCACTTTGGGGCTCGGTTGTTAG
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Coding sequence (CDS) from alignment at tig00000065_pilon:133149..134324+

>Gchil10255.t1 ID=Gchil10255.t1|Name=Gchil10255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000065_pilon:133149..134324+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTCAAGCAAATTAGCGTTTTGGTTATGGTCTTCGTACTGATTGC
TCCCACAAAGGCGGCAGTGATCGACGGTGAATACGTGATTCAGCTGGAGG
GCACATGCAATCCAGATTGTCGTGATGCTCTTCAGCAAGCTCTAGACAAT
GGGCCAGATACAGCAGGCTGCTCCCTGGCCGCCACGGGCTCGCAACTCGG
CGGTTTTGCGTTCGAGTTTGTATCATGTCCGACGGCGGCGGGGGTTGAGT
TGGCAGTGGTATCCGGCATCGTCTTCGCCCAGAGCAGCACCGGCCAGGTA
CCGACGGTGCAGCTAGTGGAGCAGAACGTGGAACTGACCACGCAGGCAAC
ATCGACGTCTCTGTGGGGCATTGACGAGACGGACGGCGGTGTCAAGAGAA
ACTTACTACGAAATCCGGTGCGAGACGGGCTGCGAACATGCAGCATGAGC
AGCAACAACGGCGCTGGCGTCAATGTGTGGATCTTGGACACCGGCTGTAC
CCCCATCAACGGCGGGCTGTGCACTGGTTTCCATGGCGGCGCTAATTTGT
GTGAGGACAACTATGGCCACGGTGAACATGTCGGTGGCACCGCAACCGAC
AGTGTTTTTGGTGTGGCCTTCGGAGCCGCGCGCAGCTGCGTCAAAGTGCT
CGATGACAGCGGCGGGGGCTCTGTCATCGATGTAATCAAAGGAATTGAGT
TCGTTGGAGAAAATCTCAACCTGTTCGGGAAGGGCGACGTGATTAACCTT
TCGCTCGGCGGTCTTAGGTTAGAAGTACTCAACAACGCTGTAAAGGCCGT
TCGGGATTTGGGCGTCTACTTTGCCATCGCAGCTGGCAATGGAAACGACA
ACGCTTGCAACTATTCACCAGCATCTGCCGAAGGCCCTGGAATTTTTACA
GTGCAGGCGCACACAGAGAATCTTAAGAAGGCTAGCTTTTCCAACTATGC
TACGGTTCTGAACAGTTGCACCACACTCACAGCTCCTGGAGTTGACATCG
AATCCGTCAATGGTATTGCATCAGGAACCTCCATGGCTGCGCCTCATGTT
GCTGGAGCATGTGCTGTTTTGCTTGCAGACGATAAAACGCCGACCAAGGC
CCTCCTCACAGCTAAGAGCGTCATAATCAACCCCCTGATTGGCCTTAGAC
GTCGCACTTTGGGGCTCGGTTGTTAG
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