Gchil10254.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10254.t1
Unique NameGchil10254.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:129837..130232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1026970.XP_008833161.1
Preferred nameDHODH
PFAMsDHO_dh
Max annot lvl33208|Metazoa
KEGG rclassRC00051
KEGG koko:K00254
KEGG ReactionR01868
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
GOsGO:0000003,GO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0004152,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0007275,GO:0007565,GO:0007584,GO:0007589,GO:0007595,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009163,GO:0009410,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010821,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0016020,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019856,GO:0019866,GO:0022414,GO:0022603,GO:0030879,GO:0031000,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0033043,GO:0034404,GO:0034641,GO:0034654,GO:0036094,GO:0036270,GO:0036477,GO:0042221,GO:0042493,GO:0042594,GO:0042981,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046112,GO:0046134,GO:0046483,GO:0046903,GO:0048037,GO:0048038,GO:0048039,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050878,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051704,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090140,GO:0097159,GO:0097367,GO:0097458,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:1903576
Evalue2.42e-13
EggNOG OGsCOG0167@1|root,KOG1436@2759|Eukaryota,38BTB@33154|Opisthokonta,3BDAR@33208|Metazoa,3CRQM@33213|Bilateria,48548@7711|Chordata,48YSI@7742|Vertebrata,3JBPW@40674|Mammalia,35AV6@314146|Euarchontoglires,4Q0N7@9989|Rodentia
EC1.3.5.2
DescriptionDihydroorotate dehydrogenase (quinone), mitochondrial
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10254Gchil10254Gracilaria chilensis NLEC103_M9 malegenetig00000065_pilon 129837..130232 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10254.t1.start1Gchil10254.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000065_pilon 129837..129839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10254.t1.CDS1Gchil10254.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000065_pilon 129837..130232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10254.t1.exon1Gchil10254.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000065_pilon 129837..130232 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10254.t1.stop1Gchil10254.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000065_pilon 130230..130232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10254.t1Gchil10254.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000065_pilon 129837..130232 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10254.t1 ID=Gchil10254.t1|Name=Gchil10254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=132bp
MSLRFFASMAAASIAALYAYAASTFVYHGSLRRYLYSFNPERAHRIAVML
SKPHLAAPRLPFVPHQRDSSPRLLSHVCALPFYNPVVLASGFEKHAEAMF
GFFHVGSVTPVAQERNERSEVFRLTEHRAVL*
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spliced messenger RNA

>Gchil10254.t1 ID=Gchil10254.t1|Name=Gchil10254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00000065_pilon:129837..130232+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTGCGATTCTTCGCGAGCATGGCCGCCGCATCGATTGCCGCCTT
GTATGCGTACGCCGCTTCTACTTTCGTCTACCACGGCTCGCTGCGGCGTT
ACCTGTATTCGTTCAACCCCGAGCGAGCGCATCGCATCGCAGTGATGCTT
TCCAAACCGCACCTGGCTGCCCCGCGTCTGCCCTTCGTCCCACACCAGCG
CGACTCCTCCCCGCGCCTGCTTTCGCACGTCTGCGCTTTGCCGTTCTACA
ACCCTGTTGTTCTCGCCTCCGGCTTTGAGAAGCACGCAGAAGCCATGTTC
GGCTTTTTTCACGTCGGCTCCGTCACCCCTGTTGCGCAAGAACGCAATGA
GCGCTCTGAGGTTTTCCGCCTCACTGAGCACCGTGCTGTGCTATAG
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protein sequence of Gchil10254.t1

>Gchil10254.t1 ID=Gchil10254.t1|Name=Gchil10254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=132bp
MSLRFFASMAAASIAALYAYAASTFVYHGSLRRYLYSFNPERAHRIAVML
SKPHLAAPRLPFVPHQRDSSPRLLSHVCALPFYNPVVLASGFEKHAEAMF
GFFHVGSVTPVAQERNERSEVFRLTEHRAVL*
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mRNA from alignment at tig00000065_pilon:129837..130232+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10254.t1 ID=Gchil10254.t1|Name=Gchil10254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00000065_pilon:129837..130232+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTGCGATTCTTCGCGAGCATGGCCGCCGCATCGATTGCCGCCTT
GTATGCGTACGCCGCTTCTACTTTCGTCTACCACGGCTCGCTGCGGCGTT
ACCTGTATTCGTTCAACCCCGAGCGAGCGCATCGCATCGCAGTGATGCTT
TCCAAACCGCACCTGGCTGCCCCGCGTCTGCCCTTCGTCCCACACCAGCG
CGACTCCTCCCCGCGCCTGCTTTCGCACGTCTGCGCTTTGCCGTTCTACA
ACCCTGTTGTTCTCGCCTCCGGCTTTGAGAAGCACGCAGAAGCCATGTTC
GGCTTTTTTCACGTCGGCTCCGTCACCCCTGTTGCGCAAGAACGCAATGA
GCGCTCTGAGGTTTTCCGCCTCACTGAGCACCGTGCTGTGCTATAG
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Coding sequence (CDS) from alignment at tig00000065_pilon:129837..130232+

>Gchil10254.t1 ID=Gchil10254.t1|Name=Gchil10254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=396bp|location=Sequence derived from alignment at tig00000065_pilon:129837..130232+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTGCGATTCTTCGCGAGCATGGCCGCCGCATCGATTGCCGCCTT
GTATGCGTACGCCGCTTCTACTTTCGTCTACCACGGCTCGCTGCGGCGTT
ACCTGTATTCGTTCAACCCCGAGCGAGCGCATCGCATCGCAGTGATGCTT
TCCAAACCGCACCTGGCTGCCCCGCGTCTGCCCTTCGTCCCACACCAGCG
CGACTCCTCCCCGCGCCTGCTTTCGCACGTCTGCGCTTTGCCGTTCTACA
ACCCTGTTGTTCTCGCCTCCGGCTTTGAGAAGCACGCAGAAGCCATGTTC
GGCTTTTTTCACGTCGGCTCCGTCACCCCTGTTGCGCAAGAACGCAATGA
GCGCTCTGAGGTTTTCCGCCTCACTGAGCACCGTGCTGTGCTATAG
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