Gchil10185.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10185.t1
Unique NameGchil10185.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000118_piloncontigtig00000118_pilon:112669..114153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1212548.B381_16785
PFAMsDUF1214,DUF1254
Max annot lvl1236|Gammaproteobacteria
Evalue1.26e-111
EggNOG OGsCOG5361@1|root,COG5361@2|Bacteria,1MWTW@1224|Proteobacteria,1S82V@1236|Gammaproteobacteria,1Z3QW@136846|Pseudomonas stutzeri group
DescriptionProtein of unknown function (DUF1214)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10185Gchil10185Gracilaria chilensis NLEC103_M9 malegenetig00000118_pilon 112669..114153 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10185.t1.start1Gchil10185.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000118_pilon 112669..112671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10185.t1.CDS1Gchil10185.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000118_pilon 112669..114153 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10185.t1.exon1Gchil10185.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000118_pilon 112669..114153 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10185.t1.stop1Gchil10185.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000118_pilon 114151..114153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10185.t1Gchil10185.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000118_pilon 112669..114153 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10185.t1 ID=Gchil10185.t1|Name=Gchil10185.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp
MANIVSDAIAEEEFAYAIGIQIYTFAQPLLICERERNIRLNPPDFNGQLG
LAPVACLNDIGHMENVSTADDVVPYMPNCDTVYSAAYIELVDEPIVLTAP
TITDRYWSIQLADCYATNVAYIGTRATNGEGGNFILVGPNYDGDLPSDMP
VQKLDYNSCMFFLRIAPLVGVNIDEEKDLAKIHEYQKQFYLTSLSNWKMN
NIGVAAVPESVKTRPQYIGDLAYYQIVADLFIENPPISAHDAQTVTYKYV
GLEVGQKFDPDSISEGIRAGLVRAANMGRKIMDWQVNHTDGQLSTRWKLV
EEGCYGYNYPPRAKGALGGLLVHDWAEAEYFMTVESTVLDEDGKPTGGEP
FDSKNKYVMYFAKDRIPKVNTAKKAFWSVTAYGPDKQLVPNDKRRYSVGD
RTLIPDKDGGITIYLQRDDPKGEVGDPNASNNWLPIPHDDGDMFKLLLRI
YIPRHVSLHPVPPERFAPPVLLRESASVRAMLQSKSPMCHCDDK*
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spliced messenger RNA

>Gchil10185.t1 ID=Gchil10185.t1|Name=Gchil10185.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000118_pilon:112669..114153+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACATCGTGAGTGACGCAATCGCTGAAGAGGAGTTCGCGTACGC
CATTGGTATTCAGATATACACCTTCGCTCAGCCGTTGCTAATTTGCGAGC
GCGAACGCAACATTCGTCTTAACCCTCCAGATTTCAATGGCCAGCTAGGT
CTTGCTCCGGTGGCCTGCCTCAATGATATTGGCCATATGGAAAACGTCTC
CACTGCAGATGATGTCGTACCCTACATGCCGAACTGCGATACTGTGTACA
GTGCTGCGTATATTGAGCTCGTGGATGAGCCTATCGTGCTTACGGCGCCC
ACCATCACAGATCGCTACTGGAGCATCCAGCTTGCTGACTGCTACGCGAC
AAATGTGGCGTACATAGGCACGCGGGCCACGAATGGAGAGGGTGGCAACT
TCATTCTTGTAGGCCCGAATTATGACGGAGACCTACCCTCTGACATGCCT
GTTCAGAAATTGGACTACAACTCCTGTATGTTCTTCCTTCGCATTGCTCC
GCTGGTTGGCGTAAACATTGATGAGGAGAAAGATTTGGCCAAGATTCATG
AGTACCAAAAACAGTTTTATCTCACGTCACTAAGCAATTGGAAGATGAAT
AATATTGGCGTGGCGGCTGTGCCAGAGAGTGTCAAAACGCGCCCACAGTA
CATCGGAGATCTGGCGTACTACCAGATTGTCGCAGATTTATTCATCGAGA
ACCCGCCTATCAGTGCCCACGACGCGCAGACCGTGACATACAAGTATGTA
GGACTGGAAGTGGGCCAGAAATTCGACCCAGATTCCATCTCGGAGGGCAT
TCGCGCCGGGCTAGTTCGCGCTGCAAACATGGGAAGAAAGATTATGGACT
GGCAGGTGAATCATACCGACGGTCAGCTTAGCACGCGGTGGAAGTTGGTG
GAGGAAGGGTGTTACGGGTATAACTACCCGCCCCGGGCCAAGGGGGCGCT
AGGGGGTCTTCTGGTGCACGACTGGGCGGAGGCAGAATACTTCATGACGG
TAGAGAGTACTGTTTTGGACGAAGATGGGAAGCCGACGGGCGGGGAGCCT
TTTGACAGCAAGAACAAGTATGTGATGTACTTTGCAAAAGATCGCATCCC
GAAAGTGAACACAGCCAAAAAAGCGTTCTGGTCGGTCACGGCGTACGGGC
CGGACAAGCAGCTGGTGCCTAACGACAAGCGCCGGTATTCGGTCGGTGAC
CGCACTCTAATTCCGGACAAGGACGGGGGGATCACAATCTACCTGCAACG
CGATGACCCCAAAGGTGAAGTGGGCGACCCAAACGCCTCAAATAATTGGC
TGCCTATCCCGCACGACGACGGGGATATGTTCAAATTGTTGCTTCGTATC
TACATCCCACGGCATGTATCCCTCCACCCGGTGCCGCCGGAAAGGTTCGC
TCCGCCGGTCTTGTTGCGAGAGAGTGCTTCGGTTCGCGCGATGCTTCAGA
GCAAATCTCCGATGTGCCATTGTGATGACAAGTAG
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protein sequence of Gchil10185.t1

>Gchil10185.t1 ID=Gchil10185.t1|Name=Gchil10185.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=495bp
MANIVSDAIAEEEFAYAIGIQIYTFAQPLLICERERNIRLNPPDFNGQLG
LAPVACLNDIGHMENVSTADDVVPYMPNCDTVYSAAYIELVDEPIVLTAP
TITDRYWSIQLADCYATNVAYIGTRATNGEGGNFILVGPNYDGDLPSDMP
VQKLDYNSCMFFLRIAPLVGVNIDEEKDLAKIHEYQKQFYLTSLSNWKMN
NIGVAAVPESVKTRPQYIGDLAYYQIVADLFIENPPISAHDAQTVTYKYV
GLEVGQKFDPDSISEGIRAGLVRAANMGRKIMDWQVNHTDGQLSTRWKLV
EEGCYGYNYPPRAKGALGGLLVHDWAEAEYFMTVESTVLDEDGKPTGGEP
FDSKNKYVMYFAKDRIPKVNTAKKAFWSVTAYGPDKQLVPNDKRRYSVGD
RTLIPDKDGGITIYLQRDDPKGEVGDPNASNNWLPIPHDDGDMFKLLLRI
YIPRHVSLHPVPPERFAPPVLLRESASVRAMLQSKSPMCHCDDK*
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mRNA from alignment at tig00000118_pilon:112669..114153+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10185.t1 ID=Gchil10185.t1|Name=Gchil10185.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000118_pilon:112669..114153+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAACATCGTGAGTGACGCAATCGCTGAAGAGGAGTTCGCGTACGC
CATTGGTATTCAGATATACACCTTCGCTCAGCCGTTGCTAATTTGCGAGC
GCGAACGCAACATTCGTCTTAACCCTCCAGATTTCAATGGCCAGCTAGGT
CTTGCTCCGGTGGCCTGCCTCAATGATATTGGCCATATGGAAAACGTCTC
CACTGCAGATGATGTCGTACCCTACATGCCGAACTGCGATACTGTGTACA
GTGCTGCGTATATTGAGCTCGTGGATGAGCCTATCGTGCTTACGGCGCCC
ACCATCACAGATCGCTACTGGAGCATCCAGCTTGCTGACTGCTACGCGAC
AAATGTGGCGTACATAGGCACGCGGGCCACGAATGGAGAGGGTGGCAACT
TCATTCTTGTAGGCCCGAATTATGACGGAGACCTACCCTCTGACATGCCT
GTTCAGAAATTGGACTACAACTCCTGTATGTTCTTCCTTCGCATTGCTCC
GCTGGTTGGCGTAAACATTGATGAGGAGAAAGATTTGGCCAAGATTCATG
AGTACCAAAAACAGTTTTATCTCACGTCACTAAGCAATTGGAAGATGAAT
AATATTGGCGTGGCGGCTGTGCCAGAGAGTGTCAAAACGCGCCCACAGTA
CATCGGAGATCTGGCGTACTACCAGATTGTCGCAGATTTATTCATCGAGA
ACCCGCCTATCAGTGCCCACGACGCGCAGACCGTGACATACAAGTATGTA
GGACTGGAAGTGGGCCAGAAATTCGACCCAGATTCCATCTCGGAGGGCAT
TCGCGCCGGGCTAGTTCGCGCTGCAAACATGGGAAGAAAGATTATGGACT
GGCAGGTGAATCATACCGACGGTCAGCTTAGCACGCGGTGGAAGTTGGTG
GAGGAAGGGTGTTACGGGTATAACTACCCGCCCCGGGCCAAGGGGGCGCT
AGGGGGTCTTCTGGTGCACGACTGGGCGGAGGCAGAATACTTCATGACGG
TAGAGAGTACTGTTTTGGACGAAGATGGGAAGCCGACGGGCGGGGAGCCT
TTTGACAGCAAGAACAAGTATGTGATGTACTTTGCAAAAGATCGCATCCC
GAAAGTGAACACAGCCAAAAAAGCGTTCTGGTCGGTCACGGCGTACGGGC
CGGACAAGCAGCTGGTGCCTAACGACAAGCGCCGGTATTCGGTCGGTGAC
CGCACTCTAATTCCGGACAAGGACGGGGGGATCACAATCTACCTGCAACG
CGATGACCCCAAAGGTGAAGTGGGCGACCCAAACGCCTCAAATAATTGGC
TGCCTATCCCGCACGACGACGGGGATATGTTCAAATTGTTGCTTCGTATC
TACATCCCACGGCATGTATCCCTCCACCCGGTGCCGCCGGAAAGGTTCGC
TCCGCCGGTCTTGTTGCGAGAGAGTGCTTCGGTTCGCGCGATGCTTCAGA
GCAAATCTCCGATGTGCCATTGTGATGACAAGTAG
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Coding sequence (CDS) from alignment at tig00000118_pilon:112669..114153+

>Gchil10185.t1 ID=Gchil10185.t1|Name=Gchil10185.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00000118_pilon:112669..114153+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAACATCGTGAGTGACGCAATCGCTGAAGAGGAGTTCGCGTACGC
CATTGGTATTCAGATATACACCTTCGCTCAGCCGTTGCTAATTTGCGAGC
GCGAACGCAACATTCGTCTTAACCCTCCAGATTTCAATGGCCAGCTAGGT
CTTGCTCCGGTGGCCTGCCTCAATGATATTGGCCATATGGAAAACGTCTC
CACTGCAGATGATGTCGTACCCTACATGCCGAACTGCGATACTGTGTACA
GTGCTGCGTATATTGAGCTCGTGGATGAGCCTATCGTGCTTACGGCGCCC
ACCATCACAGATCGCTACTGGAGCATCCAGCTTGCTGACTGCTACGCGAC
AAATGTGGCGTACATAGGCACGCGGGCCACGAATGGAGAGGGTGGCAACT
TCATTCTTGTAGGCCCGAATTATGACGGAGACCTACCCTCTGACATGCCT
GTTCAGAAATTGGACTACAACTCCTGTATGTTCTTCCTTCGCATTGCTCC
GCTGGTTGGCGTAAACATTGATGAGGAGAAAGATTTGGCCAAGATTCATG
AGTACCAAAAACAGTTTTATCTCACGTCACTAAGCAATTGGAAGATGAAT
AATATTGGCGTGGCGGCTGTGCCAGAGAGTGTCAAAACGCGCCCACAGTA
CATCGGAGATCTGGCGTACTACCAGATTGTCGCAGATTTATTCATCGAGA
ACCCGCCTATCAGTGCCCACGACGCGCAGACCGTGACATACAAGTATGTA
GGACTGGAAGTGGGCCAGAAATTCGACCCAGATTCCATCTCGGAGGGCAT
TCGCGCCGGGCTAGTTCGCGCTGCAAACATGGGAAGAAAGATTATGGACT
GGCAGGTGAATCATACCGACGGTCAGCTTAGCACGCGGTGGAAGTTGGTG
GAGGAAGGGTGTTACGGGTATAACTACCCGCCCCGGGCCAAGGGGGCGCT
AGGGGGTCTTCTGGTGCACGACTGGGCGGAGGCAGAATACTTCATGACGG
TAGAGAGTACTGTTTTGGACGAAGATGGGAAGCCGACGGGCGGGGAGCCT
TTTGACAGCAAGAACAAGTATGTGATGTACTTTGCAAAAGATCGCATCCC
GAAAGTGAACACAGCCAAAAAAGCGTTCTGGTCGGTCACGGCGTACGGGC
CGGACAAGCAGCTGGTGCCTAACGACAAGCGCCGGTATTCGGTCGGTGAC
CGCACTCTAATTCCGGACAAGGACGGGGGGATCACAATCTACCTGCAACG
CGATGACCCCAAAGGTGAAGTGGGCGACCCAAACGCCTCAAATAATTGGC
TGCCTATCCCGCACGACGACGGGGATATGTTCAAATTGTTGCTTCGTATC
TACATCCCACGGCATGTATCCCTCCACCCGGTGCCGCCGGAAAGGTTCGC
TCCGCCGGTCTTGTTGCGAGAGAGTGCTTCGGTTCGCGCGATGCTTCAGA
GCAAATCTCCGATGTGCCATTGTGATGACAAGTAG
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