Gchil10174.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10174.t1
Unique Name	Gchil10174.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	219

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000222_pilon	contig	tig00000222_pilon:208771..209427 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1449343.JQLQ01000002_gene813
Preferred name	pgl
PFAMs	Lactonase
Max annot lvl	91061\|Bacilli
KEGG rclass	RC00537
KEGG ko	ko:K07404
KEGG Reaction	R02035
KEGG Pathway	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00004,M00006,M00008
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016787,GO:0016788,GO:0017057,GO:0044424,GO:0044444,GO:0044464,GO:0052689
Evalue	7.06e-15
EggNOG OGs	COG2706@1\|root,COG2706@2\|Bacteria,1TQ3J@1239\|Firmicutes,4HBHB@91061\|Bacilli,27FGN@186828\|Carnobacteriaceae
EC	3.1.1.31
Description	Lactonase, 7-bladed beta-propeller
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10174	Gchil10174	Gracilaria chilensis NLEC103_M9 male	gene	tig00000222_pilon 208771..209427 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10174.t1.stop1	Gchil10174.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000222_pilon 208771..208773 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10174.t1.CDS1	Gchil10174.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000222_pilon 208771..209427 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10174.t1.exon1	Gchil10174.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000222_pilon 208771..209427 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10174.t1.start1	Gchil10174.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000222_pilon 209425..209427 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10174.t1	Gchil10174.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000222_pilon 208771..209427 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000222_pilon:208771..209427-
coding sequence from alignment at tig00000222_pilon:208771..209427-

mRNA sequence

>Gchil10174.t1 ID=Gchil10174.t1|Name=Gchil10174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp
MFGQPHPHMVLLYMEGVIVPDAGSDNVLHFKVCPTDRKLAMLKRIKMSLQ
DAPRHAVKHPTTDTVYVVGEVSTPISVLKPKGCGRGLSVCSRVDVLKKKP
KDVSLAAIRVTKDGRFLYVSVRYPGTTNGYIAGYGLDSRTGDIQAQIGMW
DSFGVHPRDFYVIERAVFEGRCISFVAVVHRDSDNPVLIERDRGSGMLMD
CPALNLNASSPMSVIPIW*

spliced messenger RNA

>Gchil10174.t1 ID=Gchil10174.t1|Name=Gchil10174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000222_pilon:208771..209427- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGGTCAGCCTCATCCTCATATGGTCTTGCTGTATATGGAGGGTGT
AATTGTACCTGATGCTGGCTCTGACAATGTATTGCACTTCAAGGTATGCC
CCACTGATAGAAAACTCGCAATGCTGAAGCGAATCAAGATGAGCCTCCAA
GATGCTCCTCGCCACGCCGTGAAACATCCCACGACAGACACGGTGTACGT
CGTTGGTGAAGTTTCCACCCCGATATCAGTGTTGAAGCCGAAAGGATGTG
GCAGGGGACTTTCGGTATGTAGTAGAGTTGATGTGCTTAAGAAAAAACCA
AAGGATGTATCACTTGCAGCTATTCGAGTTACAAAAGATGGACGATTCCT
TTATGTTTCAGTAAGGTATCCTGGAACAACGAATGGCTATATCGCTGGAT
ATGGGCTTGATTCCCGAACAGGCGATATACAAGCACAGATTGGAATGTGG
GATTCTTTCGGTGTGCATCCTAGAGACTTCTATGTGATTGAACGAGCAGT
GTTTGAGGGTCGGTGCATAAGCTTTGTGGCTGTTGTTCACAGAGATTCGG
ACAATCCTGTTCTTATCGAACGTGACCGAGGTTCCGGGATGCTCATGGAC
TGCCCTGCTTTGAATCTAAATGCATCATCCCCGATGTCTGTGATACCGAT
TTGGTGA

protein sequence of Gchil10174.t1

>Gchil10174.t1 ID=Gchil10174.t1|Name=Gchil10174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=219bp
MFGQPHPHMVLLYMEGVIVPDAGSDNVLHFKVCPTDRKLAMLKRIKMSLQ
DAPRHAVKHPTTDTVYVVGEVSTPISVLKPKGCGRGLSVCSRVDVLKKKP
KDVSLAAIRVTKDGRFLYVSVRYPGTTNGYIAGYGLDSRTGDIQAQIGMW
DSFGVHPRDFYVIERAVFEGRCISFVAVVHRDSDNPVLIERDRGSGMLMD
CPALNLNASSPMSVIPIW*

mRNA from alignment at tig00000222_pilon:208771..209427-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10174.t1 ID=Gchil10174.t1|Name=Gchil10174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000222_pilon:208771..209427- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGGTCAGCCTCATCCTCATATGGTCTTGCTGTATATGGAGGGTGT
AATTGTACCTGATGCTGGCTCTGACAATGTATTGCACTTCAAGGTATGCC
CCACTGATAGAAAACTCGCAATGCTGAAGCGAATCAAGATGAGCCTCCAA
GATGCTCCTCGCCACGCCGTGAAACATCCCACGACAGACACGGTGTACGT
CGTTGGTGAAGTTTCCACCCCGATATCAGTGTTGAAGCCGAAAGGATGTG
GCAGGGGACTTTCGGTATGTAGTAGAGTTGATGTGCTTAAGAAAAAACCA
AAGGATGTATCACTTGCAGCTATTCGAGTTACAAAAGATGGACGATTCCT
TTATGTTTCAGTAAGGTATCCTGGAACAACGAATGGCTATATCGCTGGAT
ATGGGCTTGATTCCCGAACAGGCGATATACAAGCACAGATTGGAATGTGG
GATTCTTTCGGTGTGCATCCTAGAGACTTCTATGTGATTGAACGAGCAGT
GTTTGAGGGTCGGTGCATAAGCTTTGTGGCTGTTGTTCACAGAGATTCGG
ACAATCCTGTTCTTATCGAACGTGACCGAGGTTCCGGGATGCTCATGGAC
TGCCCTGCTTTGAATCTAAATGCATCATCCCCGATGTCTGTGATACCGAT
TTGGTGA

Coding sequence (CDS) from alignment at tig00000222_pilon:208771..209427-

>Gchil10174.t1 ID=Gchil10174.t1|Name=Gchil10174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000222_pilon:208771..209427- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGGTCAGCCTCATCCTCATATGGTCTTGCTGTATATGGAGGGTGT
AATTGTACCTGATGCTGGCTCTGACAATGTATTGCACTTCAAGGTATGCC
CCACTGATAGAAAACTCGCAATGCTGAAGCGAATCAAGATGAGCCTCCAA
GATGCTCCTCGCCACGCCGTGAAACATCCCACGACAGACACGGTGTACGT
CGTTGGTGAAGTTTCCACCCCGATATCAGTGTTGAAGCCGAAAGGATGTG
GCAGGGGACTTTCGGTATGTAGTAGAGTTGATGTGCTTAAGAAAAAACCA
AAGGATGTATCACTTGCAGCTATTCGAGTTACAAAAGATGGACGATTCCT
TTATGTTTCAGTAAGGTATCCTGGAACAACGAATGGCTATATCGCTGGAT
ATGGGCTTGATTCCCGAACAGGCGATATACAAGCACAGATTGGAATGTGG
GATTCTTTCGGTGTGCATCCTAGAGACTTCTATGTGATTGAACGAGCAGT
GTTTGAGGGTCGGTGCATAAGCTTTGTGGCTGTTGTTCACAGAGATTCGG
ACAATCCTGTTCTTATCGAACGTGACCGAGGTTCCGGGATGCTCATGGAC
TGCCCTGCTTTGAATCTAAATGCATCATCCCCGATGTCTGTGATACCGAT
TTGGTGA