Gchil10173.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10173.t1
Unique NameGchil10173.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:207489..208247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707242.1
Preferred nameMES1
PFAMsAnticodon_1,MetRS-N,WHEP-TRS,tRNA-synt_1g,tRNA_bind
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01874,ko:K04567
KEGG ReactionR03658,R03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
GOsGO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue8.17e-35
EggNOG OGsCOG0143@1|root,KOG1247@2759|Eukaryota,KOG2241@2759|Eukaryota
EC6.1.1.10,6.1.1.6
DescriptiontRNA binding
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10173Gchil10173Gracilaria chilensis NLEC103_M9 malegenetig00000222_pilon 207489..208247 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10173.t1.stop1Gchil10173.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000222_pilon 207489..207491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10173.t1.CDS1Gchil10173.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 207489..208247 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10173.t1.exon1Gchil10173.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 207489..208247 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10173.t1.start1Gchil10173.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000222_pilon 208245..208247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10173.t1Gchil10173.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000222_pilon 207489..208247 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10173.t1 ID=Gchil10173.t1|Name=Gchil10173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MKRKQPWNLLKRGETRTAGSALTYAANLALLVTVILEPFLGTKFSTKVFS
QLGLQYKEGENNLIPERLKTLYWIKPGTITGKTQILLTTLTKDQVAEYRQ
SFSGYASNAERSTVKETEKSFALDLRVGEILENREHEESERLFVGRVDVG
EKEVRTVVASLRDVYTMDELKGKKVIVVCNLAAANLAGVESQRMILVGEK
KKVTKVLSVDDGAKVGQRIIAKGAGVGDLKKRLDRKAFKRQAICCASGRT
GK*
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spliced messenger RNA

>Gchil10173.t1 ID=Gchil10173.t1|Name=Gchil10173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000222_pilon:207489..208247- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGAAAGCAACCATGGAATTTGTTGAAGCGCGGAGAAACTCGCAC
AGCAGGCAGCGCTCTCACTTACGCTGCAAACCTAGCGCTACTGGTGACAG
TGATTTTGGAACCGTTCTTGGGGACAAAGTTTTCGACAAAGGTATTCTCA
CAACTCGGACTACAATATAAAGAGGGGGAGAACAATTTGATACCAGAGAG
GTTGAAAACATTGTACTGGATTAAACCGGGTACGATAACTGGAAAGACAC
AGATCTTATTGACTACACTTACAAAAGACCAAGTCGCTGAGTATAGACAG
AGCTTTAGTGGCTATGCGTCGAACGCAGAACGCAGCACAGTCAAAGAGAC
TGAAAAAAGCTTTGCTCTCGATTTACGCGTAGGTGAAATCTTAGAAAATA
GAGAACATGAGGAATCGGAACGTTTGTTTGTGGGAAGAGTGGACGTTGGA
GAGAAGGAAGTGCGCACAGTGGTGGCTAGTTTGCGTGATGTGTACACCAT
GGACGAGCTAAAAGGAAAAAAAGTAATTGTGGTGTGTAATCTAGCGGCGG
CGAATTTGGCCGGGGTGGAGTCTCAGCGTATGATTTTGGTGGGCGAGAAG
AAGAAGGTTACAAAAGTTCTGAGCGTTGATGACGGGGCTAAGGTGGGGCA
ACGAATCATTGCTAAGGGTGCTGGGGTGGGTGACTTGAAGAAGCGACTCG
ATCGAAAAGCTTTCAAGCGTCAAGCAATTTGTTGCGCATCGGGAAGGACG
GGTAAATAG
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protein sequence of Gchil10173.t1

>Gchil10173.t1 ID=Gchil10173.t1|Name=Gchil10173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MKRKQPWNLLKRGETRTAGSALTYAANLALLVTVILEPFLGTKFSTKVFS
QLGLQYKEGENNLIPERLKTLYWIKPGTITGKTQILLTTLTKDQVAEYRQ
SFSGYASNAERSTVKETEKSFALDLRVGEILENREHEESERLFVGRVDVG
EKEVRTVVASLRDVYTMDELKGKKVIVVCNLAAANLAGVESQRMILVGEK
KKVTKVLSVDDGAKVGQRIIAKGAGVGDLKKRLDRKAFKRQAICCASGRT
GK*
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mRNA from alignment at tig00000222_pilon:207489..208247-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10173.t1 ID=Gchil10173.t1|Name=Gchil10173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000222_pilon:207489..208247- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACGAAAGCAACCATGGAATTTGTTGAAGCGCGGAGAAACTCGCAC
AGCAGGCAGCGCTCTCACTTACGCTGCAAACCTAGCGCTACTGGTGACAG
TGATTTTGGAACCGTTCTTGGGGACAAAGTTTTCGACAAAGGTATTCTCA
CAACTCGGACTACAATATAAAGAGGGGGAGAACAATTTGATACCAGAGAG
GTTGAAAACATTGTACTGGATTAAACCGGGTACGATAACTGGAAAGACAC
AGATCTTATTGACTACACTTACAAAAGACCAAGTCGCTGAGTATAGACAG
AGCTTTAGTGGCTATGCGTCGAACGCAGAACGCAGCACAGTCAAAGAGAC
TGAAAAAAGCTTTGCTCTCGATTTACGCGTAGGTGAAATCTTAGAAAATA
GAGAACATGAGGAATCGGAACGTTTGTTTGTGGGAAGAGTGGACGTTGGA
GAGAAGGAAGTGCGCACAGTGGTGGCTAGTTTGCGTGATGTGTACACCAT
GGACGAGCTAAAAGGAAAAAAAGTAATTGTGGTGTGTAATCTAGCGGCGG
CGAATTTGGCCGGGGTGGAGTCTCAGCGTATGATTTTGGTGGGCGAGAAG
AAGAAGGTTACAAAAGTTCTGAGCGTTGATGACGGGGCTAAGGTGGGGCA
ACGAATCATTGCTAAGGGTGCTGGGGTGGGTGACTTGAAGAAGCGACTCG
ATCGAAAAGCTTTCAAGCGTCAAGCAATTTGTTGCGCATCGGGAAGGACG
GGTAAATAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:207489..208247-

>Gchil10173.t1 ID=Gchil10173.t1|Name=Gchil10173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000222_pilon:207489..208247- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACGAAAGCAACCATGGAATTTGTTGAAGCGCGGAGAAACTCGCAC
AGCAGGCAGCGCTCTCACTTACGCTGCAAACCTAGCGCTACTGGTGACAG
TGATTTTGGAACCGTTCTTGGGGACAAAGTTTTCGACAAAGGTATTCTCA
CAACTCGGACTACAATATAAAGAGGGGGAGAACAATTTGATACCAGAGAG
GTTGAAAACATTGTACTGGATTAAACCGGGTACGATAACTGGAAAGACAC
AGATCTTATTGACTACACTTACAAAAGACCAAGTCGCTGAGTATAGACAG
AGCTTTAGTGGCTATGCGTCGAACGCAGAACGCAGCACAGTCAAAGAGAC
TGAAAAAAGCTTTGCTCTCGATTTACGCGTAGGTGAAATCTTAGAAAATA
GAGAACATGAGGAATCGGAACGTTTGTTTGTGGGAAGAGTGGACGTTGGA
GAGAAGGAAGTGCGCACAGTGGTGGCTAGTTTGCGTGATGTGTACACCAT
GGACGAGCTAAAAGGAAAAAAAGTAATTGTGGTGTGTAATCTAGCGGCGG
CGAATTTGGCCGGGGTGGAGTCTCAGCGTATGATTTTGGTGGGCGAGAAG
AAGAAGGTTACAAAAGTTCTGAGCGTTGATGACGGGGCTAAGGTGGGGCA
ACGAATCATTGCTAAGGGTGCTGGGGTGGGTGACTTGAAGAAGCGACTCG
ATCGAAAAGCTTTCAAGCGTCAAGCAATTTGTTGCGCATCGGGAAGGACG
GGTAAATAG
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