Gchil10171.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10171.t1
Unique NameGchil10171.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:183411..184091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10171Gchil10171Gracilaria chilensis NLEC103_M9 malegenetig00000222_pilon 183411..184091 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10171.t1.start1Gchil10171.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000222_pilon 183411..183413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10171.t1.CDS1Gchil10171.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 183411..184091 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10171.t1.exon1Gchil10171.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 183411..184091 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10171.t1.stop1Gchil10171.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000222_pilon 184089..184091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10171.t1Gchil10171.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000222_pilon 183411..184091 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10171.t1 ID=Gchil10171.t1|Name=Gchil10171.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=227bp
MSSRSQSLFSAVTSRQRSVNRLLPPHIGAMYKLHRNIPNLEQLTPTHWTR
PYVLLHYARPFPKTRWPTKLFIYASWVTMGSFDRGFVVYGCLVGNDVHPW
KTYKGDVFSCNVPREIVNGEFISLVLPYNNYVDEQSQSTVQIHDSINVTL
LHGDIIPLSDDIRLHFQDSDLKHNKSPSLMCIKLHQKFEALGDVRDPEAA
DSQPRYEVCLATQFKPFTNYIHGWIS*
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spliced messenger RNA

>Gchil10171.t1 ID=Gchil10171.t1|Name=Gchil10171.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000222_pilon:183411..184091+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCAGGTCACAATCACTATTCTCGGCTGTCACATCACGTCAGCG
TTCTGTAAATCGGCTGCTTCCACCGCACATAGGAGCTATGTACAAATTGC
ATCGAAATATACCCAACCTTGAACAGCTCACTCCCACGCATTGGACTCGT
CCATATGTGTTATTGCATTACGCTAGACCGTTTCCGAAAACTCGCTGGCC
AACGAAGCTTTTTATATATGCATCATGGGTCACCATGGGGTCTTTCGATC
GTGGATTTGTCGTTTATGGCTGTCTGGTCGGTAATGACGTACATCCATGG
AAAACGTACAAAGGAGACGTATTTTCATGCAATGTTCCTCGTGAAATTGT
AAATGGGGAGTTTATTTCTCTGGTTCTACCTTACAATAATTATGTTGATG
AACAGTCACAAAGCACAGTTCAAATTCATGATTCTATCAATGTCACGCTT
CTGCATGGTGATATTATTCCCCTGTCCGACGATATCCGTCTTCATTTTCA
GGATTCAGACTTGAAACATAACAAATCCCCCTCATTGATGTGTATCAAAT
TGCATCAGAAGTTTGAAGCACTTGGAGATGTCAGAGATCCAGAAGCTGCT
GATTCTCAACCGCGATACGAAGTCTGTCTCGCTACGCAATTCAAACCATT
TACCAATTATATTCATGGTTGGATTTCGTAA
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protein sequence of Gchil10171.t1

>Gchil10171.t1 ID=Gchil10171.t1|Name=Gchil10171.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=227bp
MSSRSQSLFSAVTSRQRSVNRLLPPHIGAMYKLHRNIPNLEQLTPTHWTR
PYVLLHYARPFPKTRWPTKLFIYASWVTMGSFDRGFVVYGCLVGNDVHPW
KTYKGDVFSCNVPREIVNGEFISLVLPYNNYVDEQSQSTVQIHDSINVTL
LHGDIIPLSDDIRLHFQDSDLKHNKSPSLMCIKLHQKFEALGDVRDPEAA
DSQPRYEVCLATQFKPFTNYIHGWIS*
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mRNA from alignment at tig00000222_pilon:183411..184091+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10171.t1 ID=Gchil10171.t1|Name=Gchil10171.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000222_pilon:183411..184091+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCCAGGTCACAATCACTATTCTCGGCTGTCACATCACGTCAGCG
TTCTGTAAATCGGCTGCTTCCACCGCACATAGGAGCTATGTACAAATTGC
ATCGAAATATACCCAACCTTGAACAGCTCACTCCCACGCATTGGACTCGT
CCATATGTGTTATTGCATTACGCTAGACCGTTTCCGAAAACTCGCTGGCC
AACGAAGCTTTTTATATATGCATCATGGGTCACCATGGGGTCTTTCGATC
GTGGATTTGTCGTTTATGGCTGTCTGGTCGGTAATGACGTACATCCATGG
AAAACGTACAAAGGAGACGTATTTTCATGCAATGTTCCTCGTGAAATTGT
AAATGGGGAGTTTATTTCTCTGGTTCTACCTTACAATAATTATGTTGATG
AACAGTCACAAAGCACAGTTCAAATTCATGATTCTATCAATGTCACGCTT
CTGCATGGTGATATTATTCCCCTGTCCGACGATATCCGTCTTCATTTTCA
GGATTCAGACTTGAAACATAACAAATCCCCCTCATTGATGTGTATCAAAT
TGCATCAGAAGTTTGAAGCACTTGGAGATGTCAGAGATCCAGAAGCTGCT
GATTCTCAACCGCGATACGAAGTCTGTCTCGCTACGCAATTCAAACCATT
TACCAATTATATTCATGGTTGGATTTCGTAA
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Coding sequence (CDS) from alignment at tig00000222_pilon:183411..184091+

>Gchil10171.t1 ID=Gchil10171.t1|Name=Gchil10171.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00000222_pilon:183411..184091+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCCAGGTCACAATCACTATTCTCGGCTGTCACATCACGTCAGCG
TTCTGTAAATCGGCTGCTTCCACCGCACATAGGAGCTATGTACAAATTGC
ATCGAAATATACCCAACCTTGAACAGCTCACTCCCACGCATTGGACTCGT
CCATATGTGTTATTGCATTACGCTAGACCGTTTCCGAAAACTCGCTGGCC
AACGAAGCTTTTTATATATGCATCATGGGTCACCATGGGGTCTTTCGATC
GTGGATTTGTCGTTTATGGCTGTCTGGTCGGTAATGACGTACATCCATGG
AAAACGTACAAAGGAGACGTATTTTCATGCAATGTTCCTCGTGAAATTGT
AAATGGGGAGTTTATTTCTCTGGTTCTACCTTACAATAATTATGTTGATG
AACAGTCACAAAGCACAGTTCAAATTCATGATTCTATCAATGTCACGCTT
CTGCATGGTGATATTATTCCCCTGTCCGACGATATCCGTCTTCATTTTCA
GGATTCAGACTTGAAACATAACAAATCCCCCTCATTGATGTGTATCAAAT
TGCATCAGAAGTTTGAAGCACTTGGAGATGTCAGAGATCCAGAAGCTGCT
GATTCTCAACCGCGATACGAAGTCTGTCTCGCTACGCAATTCAAACCATT
TACCAATTATATTCATGGTTGGATTTCGTAA
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