Gchil10163.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10163.t1
Unique NameGchil10163.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:36848..38511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10163Gchil10163Gracilaria chilensis NLEC103_M9 malegenetig00000222_pilon 36848..38511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10163.t1Gchil10163.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000222_pilon 36848..38511 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10163.t1.stop1Gchil10163.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000222_pilon 36848..36850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10163.t1.CDS1Gchil10163.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 36848..37304 -
Gchil10163.t1.CDS2Gchil10163.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 37439..37579 -
Gchil10163.t1.CDS3Gchil10163.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 37661..37790 -
Gchil10163.t1.CDS4Gchil10163.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 37871..38396 -
Gchil10163.t1.CDS5Gchil10163.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 38464..38511 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10163.t1.exon1Gchil10163.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 36848..37304 -
Gchil10163.t1.exon2Gchil10163.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 37439..37579 -
Gchil10163.t1.exon3Gchil10163.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 37661..37790 -
Gchil10163.t1.exon4Gchil10163.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 37871..38396 -
Gchil10163.t1.exon5Gchil10163.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 38464..38511 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10163.t1.intron1Gchil10163.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000222_pilon 37305..37438 -
Gchil10163.t1.intron2Gchil10163.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000222_pilon 37580..37660 -
Gchil10163.t1.intron3Gchil10163.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000222_pilon 37791..37870 -
Gchil10163.t1.intron4Gchil10163.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00000222_pilon 38397..38463 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10163.t1.start1Gchil10163.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000222_pilon 38509..38511 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10163.t1 ID=Gchil10163.t1|Name=Gchil10163.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=434bp
MNEPPVSFPNPQINVNGGLDGFIAEYLREIQANMGWTCSSMELFAKEDEN
GFNSFVDNLFECTNKTAGQVHQSMKCHCDIGIGGWFQTFERYGKADFVEP
FAHDSFRVFTLKKNTFASPNRFFFFQTFDLLSWLCIFGLFAMFTSLKLLD
RGFAPAAPYKPAFEKGTFARFWHYIMKSPVLYRIRKGIQSTITRMLLTTD
DPVVANGKSTRQWFLNISISVCSLFLILSYEASMTASLVQESVSSNFQSI
ADFKMCRVHPRDVCFLRGGALEVYWKTSLSLDDCHTGHSPTYVPSYDDLF
SLVDGAKCKFGIAMEDSIRWEMLKRPCGDLVLLGEPIWTAGLHMLLPKGS
DLTTPMSLATLEFLRNTSKTGMQQDFERQGCGDDGSVTLTFWKLGLFFAL
VFSVGGIVFCCMLFDLFLRSTRTEKDTGPSSMA*
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spliced messenger RNA

>Gchil10163.t1 ID=Gchil10163.t1|Name=Gchil10163.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000222_pilon:36848..38511- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAACCTCCAGTAAGCTTTCCGAACCCTCAAATCAACGTAAATGG
CGGTCTAGATGGCTTCATAGCAGAGTACCTCCGAGAAATTCAAGCAAACA
TGGGCTGGACTTGCTCAAGCATGGAATTATTCGCTAAAGAAGACGAAAAT
GGATTCAACTCCTTTGTGGACAACCTCTTCGAATGTACGAACAAAACAGC
AGGCCAAGTACATCAGTCGATGAAATGTCATTGTGATATTGGCATCGGTG
GCTGGTTTCAAACCTTTGAGCGCTACGGCAAGGCGGATTTTGTTGAGCCT
TTTGCCCATGATAGTTTTCGCGTCTTCACTTTGAAGAAGAATACTTTCGC
TTCACCAAATCGTTTTTTCTTCTTTCAAACTTTTGACCTATTGTCCTGGC
TTTGTATATTTGGCCTGTTTGCCATGTTTACTTCTCTCAAACTTTTGGAT
AGAGGCTTTGCTCCAGCAGCACCGTACAAGCCTGCTTTCGAAAAGGGCAC
TTTTGCACGCTTCTGGCACTACATCATGAAGAGCCCAGTACTCTATCGGA
TACGCAAAGGCATCCAGAGCACAATTACCCGAATGCTTCTCACGACCGAC
GATCCGGTGGTCGCGAATGGCAAATCAACTCGACAGTGGTTTCTGAACAT
TTCTATTTCCGTGTGTTCGTTGTTTTTAATTCTCTCTTACGAAGCCAGTA
TGACGGCCTCGTTGGTGCAAGAATCGGTGTCCTCAAACTTTCAATCCATT
GCGGACTTTAAGATGTGTCGGGTTCATCCACGTGATGTTTGCTTTTTGAG
AGGCGGTGCTTTGGAGGTGTACTGGAAAACTTCTCTCTCTCTTGATGATT
GTCATACCGGACATTCCCCAACGTATGTACCATCGTATGATGATTTGTTT
TCCTTGGTGGATGGAGCAAAGTGCAAATTTGGCATTGCAATGGAAGACAG
TATTAGATGGGAAATGCTAAAACGGCCTTGTGGCGACTTGGTGTTACTAG
GCGAACCAATTTGGACTGCAGGACTCCACATGCTTTTACCGAAAGGTTCA
GATCTGACTACCCCCATGAGCTTAGCCACTCTTGAATTCCTACGAAACAC
TTCAAAAACAGGTATGCAACAAGACTTTGAGAGACAGGGATGTGGTGACG
ATGGTTCTGTGACTCTCACATTTTGGAAGTTAGGATTGTTTTTTGCTCTT
GTGTTTTCAGTTGGAGGAATAGTATTCTGTTGCATGCTCTTTGATCTGTT
CCTGCGTTCTACACGTACGGAAAAAGACACTGGACCTAGTTCAATGGCAT
AG
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protein sequence of Gchil10163.t1

>Gchil10163.t1 ID=Gchil10163.t1|Name=Gchil10163.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=434bp
MNEPPVSFPNPQINVNGGLDGFIAEYLREIQANMGWTCSSMELFAKEDEN
GFNSFVDNLFECTNKTAGQVHQSMKCHCDIGIGGWFQTFERYGKADFVEP
FAHDSFRVFTLKKNTFASPNRFFFFQTFDLLSWLCIFGLFAMFTSLKLLD
RGFAPAAPYKPAFEKGTFARFWHYIMKSPVLYRIRKGIQSTITRMLLTTD
DPVVANGKSTRQWFLNISISVCSLFLILSYEASMTASLVQESVSSNFQSI
ADFKMCRVHPRDVCFLRGGALEVYWKTSLSLDDCHTGHSPTYVPSYDDLF
SLVDGAKCKFGIAMEDSIRWEMLKRPCGDLVLLGEPIWTAGLHMLLPKGS
DLTTPMSLATLEFLRNTSKTGMQQDFERQGCGDDGSVTLTFWKLGLFFAL
VFSVGGIVFCCMLFDLFLRSTRTEKDTGPSSMA*
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mRNA from alignment at tig00000222_pilon:36848..38511-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10163.t1 ID=Gchil10163.t1|Name=Gchil10163.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1664bp|location=Sequence derived from alignment at tig00000222_pilon:36848..38511- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGAACCTCCAGTAAGCTTTCCGAACCCTCAAATCAACGTAAATGT
GAGTTCCAACTCTCTTAAGCAATTTGTACATTTCATTCGACTGACCTCGC
ATCACCGGTACCAAGGGCGGTCTAGATGGCTTCATAGCAGAGTACCTCCG
AGAAATTCAAGCAAACATGGGCTGGACTTGCTCAAGCATGGAATTATTCG
CTAAAGAAGACGAAAATGGATTCAACTCCTTTGTGGACAACCTCTTCGAA
TGTACGAACAAAACAGCAGGCCAAGTACATCAGTCGATGAAATGTCATTG
TGATATTGGCATCGGTGGCTGGTTTCAAACCTTTGAGCGCTACGGCAAGG
CGGATTTTGTTGAGCCTTTTGCCCATGATAGTTTTCGCGTCTTCACTTTG
AAGAAGAATACTTTCGCTTCACCAAATCGTTTTTTCTTCTTTCAAACTTT
TGACCTATTGTCCTGGCTTTGTATATTTGGCCTGTTTGCCATGTTTACTT
CTCTCAAACTTTTGGATAGAGGCTTTGCTCCAGCAGCACCGTACAAGCCT
GCTTTCGAAAAGGGCACTTTTGCACGCTTCTGGCACTACATCATGAAGAG
CCCAGTACTCTATCGGATACGCAAAGGCATCCAGAGCACAAGTGAGTCAA
TGCACTTGTTTGCCGTCTTTTGAGGCTGACGACTAATGTGTTAACGTTCT
TATTGTATGTCACCTGTGTAGTTACCCGAATGCTTCTCACGACCGACGAT
CCGGTGGTCGCGAATGGCAAATCAACTCGACAGTGGTTTCTGAACATTTC
TATTTCCGTGTGTTCGTTGTTTTTAATTCTCTCTTACGAAGCCAGTATGA
CGTACATATCAGTATTTGAGCACGGCATAGTGAACTCGGCTTGATACTTA
TCATTCTCTTGCAATGCTTTCTTCTATTTCAGGGCCTCGTTGGTGCAAGA
ATCGGTGTCCTCAAACTTTCAATCCATTGCGGACTTTAAGATGTGTCGGG
TTCATCCACGTGATGTTTGCTTTTTGAGAGGCGGTGCTTTGGAGGTGTAC
TGGAAAACTTCTCTCTCTCTTGAGTACGTTTTCCCTCTCCACAGTTTCTG
CGTTTTTGATATCGCTAATGTAATACTGTAGAGCCGCATGCGCCCATTTG
CATGCATCTTTATAGCTGACAAACAATTGTTGTTCCTTCCGTGATGAACG
CCGGCAGTGATTGTCATACCGGACATTCCCCAACGTATGTACCATCGTAT
GATGATTTGTTTTCCTTGGTGGATGGAGCAAAGTGCAAATTTGGCATTGC
AATGGAAGACAGTATTAGATGGGAAATGCTAAAACGGCCTTGTGGCGACT
TGGTGTTACTAGGCGAACCAATTTGGACTGCAGGACTCCACATGCTTTTA
CCGAAAGGTTCAGATCTGACTACCCCCATGAGCTTAGCCACTCTTGAATT
CCTACGAAACACTTCAAAAACAGGTATGCAACAAGACTTTGAGAGACAGG
GATGTGGTGACGATGGTTCTGTGACTCTCACATTTTGGAAGTTAGGATTG
TTTTTTGCTCTTGTGTTTTCAGTTGGAGGAATAGTATTCTGTTGCATGCT
CTTTGATCTGTTCCTGCGTTCTACACGTACGGAAAAAGACACTGGACCTA
GTTCAATGGCATAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:36848..38511-

>Gchil10163.t1 ID=Gchil10163.t1|Name=Gchil10163.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000222_pilon:36848..38511- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGAACCTCCAGTAAGCTTTCCGAACCCTCAAATCAACGTAAATGG
CGGTCTAGATGGCTTCATAGCAGAGTACCTCCGAGAAATTCAAGCAAACA
TGGGCTGGACTTGCTCAAGCATGGAATTATTCGCTAAAGAAGACGAAAAT
GGATTCAACTCCTTTGTGGACAACCTCTTCGAATGTACGAACAAAACAGC
AGGCCAAGTACATCAGTCGATGAAATGTCATTGTGATATTGGCATCGGTG
GCTGGTTTCAAACCTTTGAGCGCTACGGCAAGGCGGATTTTGTTGAGCCT
TTTGCCCATGATAGTTTTCGCGTCTTCACTTTGAAGAAGAATACTTTCGC
TTCACCAAATCGTTTTTTCTTCTTTCAAACTTTTGACCTATTGTCCTGGC
TTTGTATATTTGGCCTGTTTGCCATGTTTACTTCTCTCAAACTTTTGGAT
AGAGGCTTTGCTCCAGCAGCACCGTACAAGCCTGCTTTCGAAAAGGGCAC
TTTTGCACGCTTCTGGCACTACATCATGAAGAGCCCAGTACTCTATCGGA
TACGCAAAGGCATCCAGAGCACAATTACCCGAATGCTTCTCACGACCGAC
GATCCGGTGGTCGCGAATGGCAAATCAACTCGACAGTGGTTTCTGAACAT
TTCTATTTCCGTGTGTTCGTTGTTTTTAATTCTCTCTTACGAAGCCAGTA
TGACGGCCTCGTTGGTGCAAGAATCGGTGTCCTCAAACTTTCAATCCATT
GCGGACTTTAAGATGTGTCGGGTTCATCCACGTGATGTTTGCTTTTTGAG
AGGCGGTGCTTTGGAGGTGTACTGGAAAACTTCTCTCTCTCTTGATGATT
GTCATACCGGACATTCCCCAACGTATGTACCATCGTATGATGATTTGTTT
TCCTTGGTGGATGGAGCAAAGTGCAAATTTGGCATTGCAATGGAAGACAG
TATTAGATGGGAAATGCTAAAACGGCCTTGTGGCGACTTGGTGTTACTAG
GCGAACCAATTTGGACTGCAGGACTCCACATGCTTTTACCGAAAGGTTCA
GATCTGACTACCCCCATGAGCTTAGCCACTCTTGAATTCCTACGAAACAC
TTCAAAAACAGGTATGCAACAAGACTTTGAGAGACAGGGATGTGGTGACG
ATGGTTCTGTGACTCTCACATTTTGGAAGTTAGGATTGTTTTTTGCTCTT
GTGTTTTCAGTTGGAGGAATAGTATTCTGTTGCATGCTCTTTGATCTGTT
CCTGCGTTCTACACGTACGGAAAAAGACACTGGACCTAGTTCAATGGCAT
AG
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