Gchil10151.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10151.t1
Unique NameGchil10151.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1383541..1384521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog331113.SNE_A15010
Preferred nametal
PFAMsTAL_FSA
Max annot lvl204428|Chlamydiae
KEGG rclassRC00439,RC00604
KEGG koko:K00616
KEGG ReactionR01827
KEGG Pathwayko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
GOsGO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744
Evalue6.54e-121
EggNOG OGsCOG0176@1|root,COG0176@2|Bacteria,2JFM5@204428|Chlamydiae
EC2.2.1.2
DescriptionTransaldolase is important for the balance of metabolites in the pentose-phosphate pathway
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10151Gchil10151Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1383541..1384521 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10151.t1.stop1Gchil10151.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1383541..1383543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10151.t1.CDS1Gchil10151.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1383541..1384521 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10151.t1.exon1Gchil10151.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1383541..1384521 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10151.t1.start1Gchil10151.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1384519..1384521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10151.t1Gchil10151.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1383541..1384521 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10151.t1 ID=Gchil10151.t1|Name=Gchil10151.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=327bp
MTATQLTQYDSLRAVTTIVEDTGEIETIRAHRPYAATTNPSLVASAATKP
EYQHLLEEAVMYGREKAVAGTDTLAVVRNKLFTLFGAEILKYVPGDVSTE
VDARLSFDVPAQVEVAQNIIKMYEEVGVDRERVLIKLATTWEGVQACRQL
QKMGIKTNMTLLFSLAQAVAAAEAGAFLISPFVGRILDWYKKAEGRDSYS
AQEDPGVQSVKQIYNYYKCMGYDTIVMGASFRNKGEILELAGCDRLTIAP
KFINSLKDTPESVEAKLSMPTVEQCKSIPRLDLGEPEFRWLMNEDAMATE
KLAQGIRGFARDLEKLDKQLQGMIDA*
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spliced messenger RNA

>Gchil10151.t1 ID=Gchil10151.t1|Name=Gchil10151.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00004442_pilon:1383541..1384521- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCACCCAGCTCACTCAGTACGATTCCCTCCGCGCCGTCACCAC
TATCGTCGAGGACACCGGTGAGATCGAAACCATTCGCGCCCATCGCCCGT
ATGCAGCCACCACCAACCCCTCACTAGTCGCCTCCGCCGCCACCAAGCCT
GAGTATCAGCACTTGCTTGAAGAAGCCGTCATGTACGGCCGCGAAAAGGC
TGTAGCCGGAACAGACACCTTGGCAGTCGTCCGCAATAAACTCTTCACTC
TGTTCGGTGCTGAGATTCTCAAATACGTCCCCGGTGACGTTAGTACTGAG
GTGGACGCTCGTCTTTCCTTCGATGTCCCCGCCCAGGTTGAGGTTGCGCA
GAACATCATAAAGATGTACGAGGAAGTCGGGGTTGATCGTGAACGTGTGC
TCATTAAGCTCGCCACAACATGGGAAGGTGTGCAGGCCTGTCGCCAACTG
CAGAAGATGGGTATCAAGACCAACATGACTCTTCTCTTCTCCCTTGCGCA
GGCGGTTGCCGCCGCAGAGGCCGGCGCCTTCTTGATTTCTCCCTTTGTCG
GCCGAATTCTCGACTGGTACAAAAAGGCAGAGGGTAGGGACTCGTATTCT
GCGCAAGAAGACCCTGGGGTGCAAAGCGTAAAGCAAATCTACAATTACTA
CAAATGCATGGGTTATGATACTATTGTGATGGGTGCGAGTTTCAGAAACA
AAGGTGAGATTCTCGAGCTTGCCGGTTGTGACCGCCTCACCATAGCTCCC
AAATTTATCAACAGCTTGAAGGACACTCCTGAGAGTGTTGAGGCGAAGCT
CTCCATGCCCACTGTGGAGCAATGCAAGTCTATTCCCAGGTTGGACTTGG
GCGAGCCTGAGTTCAGATGGTTGATGAATGAAGATGCCATGGCGACAGAA
AAGCTTGCTCAGGGCATTCGCGGATTCGCCAGAGATTTGGAGAAGCTCGA
TAAACAACTTCAAGGCATGATAGACGCATAA
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protein sequence of Gchil10151.t1

>Gchil10151.t1 ID=Gchil10151.t1|Name=Gchil10151.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=327bp
MTATQLTQYDSLRAVTTIVEDTGEIETIRAHRPYAATTNPSLVASAATKP
EYQHLLEEAVMYGREKAVAGTDTLAVVRNKLFTLFGAEILKYVPGDVSTE
VDARLSFDVPAQVEVAQNIIKMYEEVGVDRERVLIKLATTWEGVQACRQL
QKMGIKTNMTLLFSLAQAVAAAEAGAFLISPFVGRILDWYKKAEGRDSYS
AQEDPGVQSVKQIYNYYKCMGYDTIVMGASFRNKGEILELAGCDRLTIAP
KFINSLKDTPESVEAKLSMPTVEQCKSIPRLDLGEPEFRWLMNEDAMATE
KLAQGIRGFARDLEKLDKQLQGMIDA*
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mRNA from alignment at tig00004442_pilon:1383541..1384521-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10151.t1 ID=Gchil10151.t1|Name=Gchil10151.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00004442_pilon:1383541..1384521- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCCACCCAGCTCACTCAGTACGATTCCCTCCGCGCCGTCACCAC
TATCGTCGAGGACACCGGTGAGATCGAAACCATTCGCGCCCATCGCCCGT
ATGCAGCCACCACCAACCCCTCACTAGTCGCCTCCGCCGCCACCAAGCCT
GAGTATCAGCACTTGCTTGAAGAAGCCGTCATGTACGGCCGCGAAAAGGC
TGTAGCCGGAACAGACACCTTGGCAGTCGTCCGCAATAAACTCTTCACTC
TGTTCGGTGCTGAGATTCTCAAATACGTCCCCGGTGACGTTAGTACTGAG
GTGGACGCTCGTCTTTCCTTCGATGTCCCCGCCCAGGTTGAGGTTGCGCA
GAACATCATAAAGATGTACGAGGAAGTCGGGGTTGATCGTGAACGTGTGC
TCATTAAGCTCGCCACAACATGGGAAGGTGTGCAGGCCTGTCGCCAACTG
CAGAAGATGGGTATCAAGACCAACATGACTCTTCTCTTCTCCCTTGCGCA
GGCGGTTGCCGCCGCAGAGGCCGGCGCCTTCTTGATTTCTCCCTTTGTCG
GCCGAATTCTCGACTGGTACAAAAAGGCAGAGGGTAGGGACTCGTATTCT
GCGCAAGAAGACCCTGGGGTGCAAAGCGTAAAGCAAATCTACAATTACTA
CAAATGCATGGGTTATGATACTATTGTGATGGGTGCGAGTTTCAGAAACA
AAGGTGAGATTCTCGAGCTTGCCGGTTGTGACCGCCTCACCATAGCTCCC
AAATTTATCAACAGCTTGAAGGACACTCCTGAGAGTGTTGAGGCGAAGCT
CTCCATGCCCACTGTGGAGCAATGCAAGTCTATTCCCAGGTTGGACTTGG
GCGAGCCTGAGTTCAGATGGTTGATGAATGAAGATGCCATGGCGACAGAA
AAGCTTGCTCAGGGCATTCGCGGATTCGCCAGAGATTTGGAGAAGCTCGA
TAAACAACTTCAAGGCATGATAGACGCATAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1383541..1384521-

>Gchil10151.t1 ID=Gchil10151.t1|Name=Gchil10151.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00004442_pilon:1383541..1384521- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCCACCCAGCTCACTCAGTACGATTCCCTCCGCGCCGTCACCAC
TATCGTCGAGGACACCGGTGAGATCGAAACCATTCGCGCCCATCGCCCGT
ATGCAGCCACCACCAACCCCTCACTAGTCGCCTCCGCCGCCACCAAGCCT
GAGTATCAGCACTTGCTTGAAGAAGCCGTCATGTACGGCCGCGAAAAGGC
TGTAGCCGGAACAGACACCTTGGCAGTCGTCCGCAATAAACTCTTCACTC
TGTTCGGTGCTGAGATTCTCAAATACGTCCCCGGTGACGTTAGTACTGAG
GTGGACGCTCGTCTTTCCTTCGATGTCCCCGCCCAGGTTGAGGTTGCGCA
GAACATCATAAAGATGTACGAGGAAGTCGGGGTTGATCGTGAACGTGTGC
TCATTAAGCTCGCCACAACATGGGAAGGTGTGCAGGCCTGTCGCCAACTG
CAGAAGATGGGTATCAAGACCAACATGACTCTTCTCTTCTCCCTTGCGCA
GGCGGTTGCCGCCGCAGAGGCCGGCGCCTTCTTGATTTCTCCCTTTGTCG
GCCGAATTCTCGACTGGTACAAAAAGGCAGAGGGTAGGGACTCGTATTCT
GCGCAAGAAGACCCTGGGGTGCAAAGCGTAAAGCAAATCTACAATTACTA
CAAATGCATGGGTTATGATACTATTGTGATGGGTGCGAGTTTCAGAAACA
AAGGTGAGATTCTCGAGCTTGCCGGTTGTGACCGCCTCACCATAGCTCCC
AAATTTATCAACAGCTTGAAGGACACTCCTGAGAGTGTTGAGGCGAAGCT
CTCCATGCCCACTGTGGAGCAATGCAAGTCTATTCCCAGGTTGGACTTGG
GCGAGCCTGAGTTCAGATGGTTGATGAATGAAGATGCCATGGCGACAGAA
AAGCTTGCTCAGGGCATTCGCGGATTCGCCAGAGATTTGGAGAAGCTCGA
TAAACAACTTCAAGGCATGATAGACGCATAA
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