Gchil10149.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10149.t1
Unique NameGchil10149.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1331617..1332141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ37972
Preferred nameTPP2
PFAMsPeptidase_S8,TPPII
Max annot lvl35493|Streptophyta
KEGG koko:K01280
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004175,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008240,GO:0009507,GO:0009536,GO:0009987,GO:0016020,GO:0016567,GO:0016604,GO:0016787,GO:0017171,GO:0019538,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0070011,GO:0070013,GO:0070647,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1990904
Evalue6.18e-17
EggNOG OGsCOG1404@1|root,KOG1114@2759|Eukaryota,37J68@33090|Viridiplantae,3GDHM@35493|Streptophyta
EC3.4.14.10
DescriptionTripeptidyl-peptidase
COG categoryO
BRITEko00000,ko01000,ko01002,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10149Gchil10149Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1331617..1332141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10149.t1.stop1Gchil10149.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1331617..1331619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10149.t1.CDS1Gchil10149.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1331617..1332141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10149.t1.exon1Gchil10149.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1331617..1332141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10149.t1.start1Gchil10149.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1332139..1332141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10149.t1Gchil10149.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1331617..1332141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10149.t1 ID=Gchil10149.t1|Name=Gchil10149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MFPEDGIMFQLQLEYGFDVFDSSSLVSLLSPGLNGALYEAEVEGGPYVSV
HDRKKQFMFASDIYPCERSLAKGEYSATAYLRHDKDDALERLRDLTMNVG
YEKSGGISLDGCHNFHGAILGLDHRRSSRTTTILECGERRAFYFAVPKKS
LFPKWVNLSEIVVGQMLIDKVMSA*
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spliced messenger RNA

>Gchil10149.t1 ID=Gchil10149.t1|Name=Gchil10149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004442_pilon:1331617..1332141- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCGGAGGACGGTATTATGTTTCAGCTACAACTTGAGTACGGGTT
TGATGTGTTTGACTCATCTTCTTTAGTGAGTCTTCTCTCTCCAGGGCTCA
ACGGTGCATTGTACGAAGCTGAAGTGGAAGGAGGGCCCTACGTATCTGTT
CATGATCGAAAGAAGCAGTTCATGTTTGCATCGGATATCTATCCCTGCGA
GCGCTCACTTGCGAAAGGTGAGTACAGCGCCACCGCATATCTCCGTCACG
ATAAAGACGATGCCCTTGAGCGACTTCGAGATCTTACCATGAATGTCGGG
TATGAAAAATCGGGTGGCATCAGTTTGGACGGTTGTCATAATTTTCACGG
TGCCATTCTAGGTCTTGATCATCGAAGGTCATCAAGAACGACGACGATTC
TGGAATGTGGCGAACGTAGGGCTTTCTATTTTGCAGTTCCAAAGAAGTCG
TTGTTTCCAAAGTGGGTTAATTTAAGCGAGATTGTAGTTGGGCAGATGTT
GATTGATAAGGTCATGTCGGCTTGA
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protein sequence of Gchil10149.t1

>Gchil10149.t1 ID=Gchil10149.t1|Name=Gchil10149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MFPEDGIMFQLQLEYGFDVFDSSSLVSLLSPGLNGALYEAEVEGGPYVSV
HDRKKQFMFASDIYPCERSLAKGEYSATAYLRHDKDDALERLRDLTMNVG
YEKSGGISLDGCHNFHGAILGLDHRRSSRTTTILECGERRAFYFAVPKKS
LFPKWVNLSEIVVGQMLIDKVMSA*
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mRNA from alignment at tig00004442_pilon:1331617..1332141-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10149.t1 ID=Gchil10149.t1|Name=Gchil10149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004442_pilon:1331617..1332141- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCGGAGGACGGTATTATGTTTCAGCTACAACTTGAGTACGGGTT
TGATGTGTTTGACTCATCTTCTTTAGTGAGTCTTCTCTCTCCAGGGCTCA
ACGGTGCATTGTACGAAGCTGAAGTGGAAGGAGGGCCCTACGTATCTGTT
CATGATCGAAAGAAGCAGTTCATGTTTGCATCGGATATCTATCCCTGCGA
GCGCTCACTTGCGAAAGGTGAGTACAGCGCCACCGCATATCTCCGTCACG
ATAAAGACGATGCCCTTGAGCGACTTCGAGATCTTACCATGAATGTCGGG
TATGAAAAATCGGGTGGCATCAGTTTGGACGGTTGTCATAATTTTCACGG
TGCCATTCTAGGTCTTGATCATCGAAGGTCATCAAGAACGACGACGATTC
TGGAATGTGGCGAACGTAGGGCTTTCTATTTTGCAGTTCCAAAGAAGTCG
TTGTTTCCAAAGTGGGTTAATTTAAGCGAGATTGTAGTTGGGCAGATGTT
GATTGATAAGGTCATGTCGGCTTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1331617..1332141-

>Gchil10149.t1 ID=Gchil10149.t1|Name=Gchil10149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00004442_pilon:1331617..1332141- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCGGAGGACGGTATTATGTTTCAGCTACAACTTGAGTACGGGTT
TGATGTGTTTGACTCATCTTCTTTAGTGAGTCTTCTCTCTCCAGGGCTCA
ACGGTGCATTGTACGAAGCTGAAGTGGAAGGAGGGCCCTACGTATCTGTT
CATGATCGAAAGAAGCAGTTCATGTTTGCATCGGATATCTATCCCTGCGA
GCGCTCACTTGCGAAAGGTGAGTACAGCGCCACCGCATATCTCCGTCACG
ATAAAGACGATGCCCTTGAGCGACTTCGAGATCTTACCATGAATGTCGGG
TATGAAAAATCGGGTGGCATCAGTTTGGACGGTTGTCATAATTTTCACGG
TGCCATTCTAGGTCTTGATCATCGAAGGTCATCAAGAACGACGACGATTC
TGGAATGTGGCGAACGTAGGGCTTTCTATTTTGCAGTTCCAAAGAAGTCG
TTGTTTCCAAAGTGGGTTAATTTAAGCGAGATTGTAGTTGGGCAGATGTT
GATTGATAAGGTCATGTCGGCTTGA
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